Wall clock time and date at job start Tue Mar 31 2020 19:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46493 * 109.47356 * 2 1 4 4 C 1.36937 * 120.00216 * 274.57209 * 3 2 1 5 5 H 1.08003 * 119.99848 * 140.38663 * 4 3 2 6 6 C 1.38805 * 119.99877 * 320.38862 * 4 3 2 7 7 N 1.31627 * 119.99938 * 156.48471 * 6 4 3 8 8 Si 1.86800 * 120.00389 * 336.48688 * 6 4 3 9 9 H 1.48500 * 109.47036 * 95.29998 * 8 6 4 10 10 H 1.48497 * 109.47561 * 215.30271 * 8 6 4 11 11 H 1.48498 * 109.47214 * 335.30378 * 8 6 4 12 12 C 1.46508 * 119.99822 * 94.57897 * 3 2 1 13 13 H 1.08998 * 109.47042 * 179.97438 * 12 3 2 14 14 C 1.52999 * 109.47361 * 59.99688 * 12 3 2 15 15 C 1.53007 * 109.46694 * 299.99562 * 12 3 2 16 16 N 1.46497 * 109.47149 * 304.99944 * 15 12 3 17 17 C 1.34776 * 119.99820 * 179.97438 * 16 15 12 18 18 O 1.21276 * 120.00162 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.00017 * 179.72531 * 17 16 15 20 20 C 1.50692 * 109.47299 * 180.27848 * 19 17 16 21 21 C 1.38288 * 119.94537 * 265.00453 * 20 19 17 22 22 C 1.38129 * 120.05885 * 179.97438 * 21 20 19 23 23 C 1.38751 * 119.94060 * 0.02562 * 22 21 20 24 24 O 1.35903 * 120.05225 * 180.02562 * 23 22 21 25 25 C 1.42901 * 116.99947 * 0.02562 * 24 23 22 26 26 C 1.38708 * 119.88828 * 0.02562 * 23 22 21 27 27 C 1.38164 * 119.94687 * 359.70042 * 26 23 22 28 28 C 1.50703 * 119.97364 * 180.31689 * 27 26 23 29 29 H 1.09004 * 109.46669 * 59.99628 * 1 2 3 30 30 H 1.08997 * 109.47234 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46959 * 300.00258 * 1 2 3 32 32 H 1.09003 * 109.46959 * 239.99742 * 2 1 3 33 33 H 1.09004 * 109.46669 * 120.00372 * 2 1 3 34 34 H 0.97000 * 119.99932 * 179.97438 * 7 6 4 35 35 H 1.08995 * 109.46793 * 180.02562 * 14 12 3 36 36 H 1.09000 * 109.46702 * 299.99888 * 14 12 3 37 37 H 1.08994 * 109.46892 * 60.00082 * 14 12 3 38 38 H 1.09006 * 109.46502 * 185.00292 * 15 12 3 39 39 H 1.08999 * 109.46868 * 65.00567 * 15 12 3 40 40 H 0.97005 * 119.99937 * 0.02562 * 16 15 12 41 41 H 1.09000 * 109.47256 * 300.27859 * 19 17 16 42 42 H 1.08999 * 109.46649 * 60.27728 * 19 17 16 43 43 H 1.08005 * 119.97351 * 359.97438 * 21 20 19 44 44 H 1.07998 * 120.02421 * 180.02562 * 22 21 20 45 45 H 1.09003 * 109.46727 * 60.00392 * 25 24 23 46 46 H 1.09002 * 109.46837 * 179.97438 * 25 24 23 47 47 H 1.08994 * 109.47101 * 300.00200 * 25 24 23 48 48 H 1.08005 * 120.02766 * 180.02562 * 26 23 22 49 49 H 1.08992 * 109.47131 * 270.25164 * 28 27 26 50 50 H 1.08999 * 109.47257 * 30.25741 * 28 27 26 51 51 H 1.09004 * 109.46953 * 150.24798 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1576 2.0582 -1.1821 5 1 1.8871 3.1021 -1.2416 6 6 2.6462 1.4028 -2.3039 7 7 2.3642 1.8573 -3.5066 8 14 3.7040 -0.1241 -2.1069 9 1 2.8509 -1.3347 -2.2161 10 1 4.7390 -0.1502 -3.1715 11 1 4.3630 -0.1015 -0.7763 12 6 2.3581 2.0380 1.2648 13 1 2.7008 3.0534 1.0662 14 6 3.4692 1.2530 1.9648 15 6 1.1211 2.0833 2.1641 16 7 0.0196 2.7304 1.4472 17 6 -1.1779 2.8820 2.0469 18 8 -1.3433 2.4831 3.1802 19 6 -2.3092 3.5532 1.3117 20 6 -3.5261 3.6023 2.1993 21 6 -4.4890 2.6142 2.1057 22 6 -5.6051 2.6565 2.9184 23 6 -5.7597 3.6919 3.8290 24 8 -6.8566 3.7355 4.6302 25 6 -7.8106 2.6820 4.4819 26 6 -4.7929 4.6824 3.9202 27 6 -3.6757 4.6324 3.1090 28 6 -2.6214 5.7043 3.2126 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.7060 1.3996 -4.2905 35 1 3.7216 1.7414 2.9060 36 1 3.1268 0.2374 2.1634 37 1 4.3504 1.2207 1.3241 38 1 1.3492 2.6495 3.0673 39 1 0.8316 1.0680 2.4352 40 1 0.1518 3.0491 0.5406 41 1 -2.0157 4.5675 1.0413 42 1 -2.5408 2.9890 0.4084 43 1 -4.3684 1.8086 1.3964 44 1 -6.3566 1.8843 2.8451 45 1 -7.3316 1.7258 4.6929 46 1 -8.6343 2.8369 5.1788 47 1 -8.1932 2.6793 3.4613 48 1 -4.9108 5.4892 4.6285 49 1 -2.8621 6.5179 2.5285 50 1 -2.5896 6.0851 4.2334 51 1 -1.6499 5.2849 2.9509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153580949.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:57 Heat of formation + Delta-G solvation = -33.947021 kcal Electronic energy + Delta-G solvation = -29675.373184 eV Core-core repulsion = 25768.706402 eV Total energy + Delta-G solvation = -3906.666782 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.44021 -39.37740 -37.88589 -37.02230 -33.84432 -32.72327 -32.31780 -31.91902 -31.18778 -28.91328 -28.58592 -26.90960 -26.66424 -25.12812 -23.65772 -22.47550 -22.20514 -20.97094 -19.79340 -19.20164 -17.83026 -16.98137 -16.63644 -16.60152 -16.01615 -15.87293 -15.72431 -15.02844 -14.85367 -14.45798 -14.19648 -13.88311 -13.70201 -13.33939 -13.27896 -13.04521 -12.83073 -12.71553 -12.47465 -12.42639 -12.29501 -12.22962 -12.05033 -11.86168 -11.63217 -11.43887 -11.35623 -11.17072 -11.04191 -10.96972 -10.82287 -10.74647 -10.41059 -10.00479 -9.76125 -9.56882 -9.46613 -8.78868 -8.54508 -8.50851 -8.08353 -6.89194 -6.09157 -3.51791 1.31896 1.39939 3.03564 3.12662 3.28248 3.43313 3.48388 3.52789 3.91700 4.47058 4.68386 4.71880 4.84422 4.88207 4.90133 4.92729 5.15589 5.21643 5.22251 5.25075 5.26708 5.34415 5.46449 5.53881 5.60310 5.64986 5.75203 5.80277 5.89629 5.94746 5.98091 6.04715 6.08767 6.19054 6.23298 6.26644 6.32990 6.35865 6.37830 6.58918 6.64562 6.68956 6.73495 6.76611 6.86681 6.99680 7.11899 7.30434 7.98668 8.04995 8.27850 8.67598 8.91652 9.62938 10.06033 11.05767 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019898 B = 0.002630 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.830673 B =10645.124821 C =10901.498036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.134 3.866 3 N -0.598 5.598 4 C -0.273 4.273 5 H 0.077 0.923 6 C 0.043 3.957 7 N -0.895 5.895 8 Si 0.877 3.123 9 H -0.287 1.287 10 H -0.304 1.304 11 H -0.267 1.267 12 C 0.155 3.845 13 H 0.078 0.922 14 C -0.162 4.162 15 C 0.110 3.890 16 N -0.707 5.707 17 C 0.510 3.490 18 O -0.549 6.549 19 C -0.103 4.103 20 C -0.093 4.093 21 C -0.063 4.063 22 C -0.212 4.212 23 C 0.124 3.876 24 O -0.321 6.321 25 C 0.028 3.972 26 C -0.153 4.153 27 C -0.029 4.029 28 C -0.117 4.117 29 H 0.058 0.942 30 H 0.032 0.968 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.038 0.962 34 H 0.263 0.737 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.412 0.588 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.055 0.945 46 H 0.097 0.903 47 H 0.054 0.946 48 H 0.127 0.873 49 H 0.073 0.927 50 H 0.068 0.932 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.924 3.641 12.447 19.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.009 3.991 3 N -0.321 5.321 4 C -0.401 4.401 5 H 0.095 0.905 6 C -0.159 4.159 7 N -0.535 5.535 8 Si 0.708 3.292 9 H -0.215 1.215 10 H -0.232 1.232 11 H -0.192 1.192 12 C 0.048 3.952 13 H 0.096 0.904 14 C -0.222 4.222 15 C -0.016 4.016 16 N -0.359 5.359 17 C 0.296 3.704 18 O -0.427 6.427 19 C -0.142 4.142 20 C -0.093 4.093 21 C -0.082 4.082 22 C -0.231 4.231 23 C 0.079 3.921 24 O -0.235 6.235 25 C -0.067 4.067 26 C -0.172 4.172 27 C -0.030 4.030 28 C -0.173 4.173 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.248 0.752 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.073 0.927 46 H 0.115 0.885 47 H 0.073 0.927 48 H 0.145 0.855 49 H 0.092 0.908 50 H 0.087 0.913 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.039 3.495 13.200 19.584 hybrid contribution 0.585 -1.279 -0.690 1.566 sum -13.453 2.216 12.510 18.504 Atomic orbital electron populations 1.22352 0.98914 0.99239 1.02111 1.21030 0.92670 0.86721 0.98703 1.44217 1.74525 1.11377 1.01996 1.18673 1.39233 0.96748 0.85470 0.90507 1.25502 0.97374 0.97807 0.95229 1.69881 1.44395 1.41794 0.97479 0.86937 0.81252 0.83553 0.77506 1.21543 1.23175 1.19216 1.20785 0.90671 0.97271 0.86512 0.90428 1.22237 0.99979 1.00372 0.99617 1.21893 0.87741 0.97141 0.94839 1.45977 1.10765 1.59944 1.19216 1.20418 0.83529 0.79681 0.86820 1.90680 1.82841 1.50518 1.18658 1.20644 0.91988 1.03025 0.98588 1.19083 0.95750 0.95858 0.98659 1.20783 0.92603 0.97063 0.97713 1.21110 1.01163 1.00307 1.00517 1.18950 0.87330 0.94952 0.90861 1.86040 1.30477 1.48529 1.58412 1.23022 0.91297 0.89996 1.02368 1.20171 0.93901 0.99822 1.03276 1.19463 0.94248 0.95596 0.93658 1.20841 0.97243 0.96583 1.02645 0.92315 0.94890 0.92908 0.93557 0.94323 0.92691 0.93419 0.93287 0.92157 0.92575 0.92294 0.75156 0.88090 0.88029 0.85809 0.85718 0.92685 0.88459 0.92719 0.85457 0.90807 0.91349 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.83 37.16 0.37 -2.76 16 2 C 0.13 2.74 4.70 -4.04 -0.02 2.72 16 3 N -0.60 -12.50 1.42 -165.65 -0.23 -12.73 16 4 C -0.27 -6.77 9.50 -15.06 -0.14 -6.91 16 5 H 0.08 2.02 8.06 -52.48 -0.42 1.59 16 6 C 0.04 1.14 5.29 -17.43 -0.09 1.05 16 7 N -0.90 -25.65 13.97 55.49 0.78 -24.87 16 8 Si 0.88 21.30 25.23 -169.99 -4.29 17.01 16 9 H -0.29 -6.93 6.66 56.52 0.38 -6.56 16 10 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 C 0.16 2.73 2.87 -67.92 -0.19 2.54 16 13 H 0.08 1.39 7.89 -51.93 -0.41 0.98 16 14 C -0.16 -2.64 9.18 37.16 0.34 -2.30 16 15 C 0.11 1.79 4.33 -4.04 -0.02 1.77 16 16 N -0.71 -11.20 3.99 -60.29 -0.24 -11.44 16 17 C 0.51 8.04 6.78 -10.98 -0.07 7.97 16 18 O -0.55 -10.44 16.03 5.56 0.09 -10.35 16 19 C -0.10 -1.31 5.15 -29.04 -0.15 -1.46 16 20 C -0.09 -1.25 4.37 -104.61 -0.46 -1.70 16 21 C -0.06 -0.82 9.67 -39.60 -0.38 -1.20 16 22 C -0.21 -2.56 9.04 -39.43 -0.36 -2.92 16 23 C 0.12 1.57 6.69 -39.22 -0.26 1.31 16 24 O -0.32 -3.71 10.50 -19.43 -0.20 -3.91 16 25 C 0.03 0.21 9.81 101.05 0.99 1.20 16 26 C -0.15 -1.95 9.64 -39.44 -0.38 -2.33 16 27 C -0.03 -0.38 5.88 -104.65 -0.62 -1.00 16 28 C -0.12 -1.26 9.21 36.01 0.33 -0.93 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.95 4.89 -51.93 -0.25 0.70 16 32 H 0.05 1.06 3.44 -51.93 -0.18 0.88 16 33 H 0.04 0.73 6.44 -51.93 -0.33 0.40 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.79 6.66 -51.93 -0.35 0.44 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 1.03 6.96 -51.93 -0.36 0.67 16 40 H 0.41 6.71 7.89 -40.82 -0.32 6.39 16 41 H 0.10 1.11 7.00 -51.93 -0.36 0.74 16 42 H 0.10 1.20 8.05 -51.93 -0.42 0.78 16 43 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 44 H 0.12 1.21 6.30 -52.49 -0.33 0.87 16 45 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 46 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 48 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 49 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 51 H 0.07 0.84 6.14 -51.93 -0.32 0.52 16 LS Contribution 398.50 15.07 6.01 6.01 Total: -1.00 -30.85 398.50 -7.45 -38.30 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -8.24 Total: 6.93 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -1.12 Total: -4.94 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.30 Total: -49.04 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.11 Total: -14.26 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.29 Total: 17.01 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.85 -7.45 -38.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153580949.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.353 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds