Wall clock time and date at job start Tue Mar 31 2020 19:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46493 * 109.47356 * 2 1 4 4 C 1.36937 * 120.00216 * 274.57209 * 3 2 1 5 5 H 1.08003 * 119.99848 * 140.38663 * 4 3 2 6 6 C 1.38805 * 119.99877 * 320.38862 * 4 3 2 7 7 N 1.31627 * 119.99938 * 156.48471 * 6 4 3 8 8 Si 1.86800 * 120.00389 * 336.48688 * 6 4 3 9 9 H 1.48500 * 109.47036 * 95.29998 * 8 6 4 10 10 H 1.48497 * 109.47561 * 215.30271 * 8 6 4 11 11 H 1.48498 * 109.47214 * 335.30378 * 8 6 4 12 12 C 1.46508 * 119.99822 * 94.57897 * 3 2 1 13 13 H 1.08998 * 109.47042 * 179.97438 * 12 3 2 14 14 C 1.52999 * 109.47361 * 59.99688 * 12 3 2 15 15 C 1.53007 * 109.46694 * 299.99562 * 12 3 2 16 16 N 1.46497 * 109.47149 * 304.99944 * 15 12 3 17 17 C 1.34776 * 119.99820 * 179.97438 * 16 15 12 18 18 O 1.21276 * 120.00162 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.00017 * 179.72531 * 17 16 15 20 20 C 1.50692 * 109.47299 * 180.27848 * 19 17 16 21 21 C 1.38288 * 119.94537 * 265.00453 * 20 19 17 22 22 C 1.38129 * 120.05885 * 179.97438 * 21 20 19 23 23 C 1.38751 * 119.94060 * 0.02562 * 22 21 20 24 24 O 1.35903 * 120.05225 * 180.02562 * 23 22 21 25 25 C 1.42901 * 116.99947 * 0.02562 * 24 23 22 26 26 C 1.38708 * 119.88828 * 0.02562 * 23 22 21 27 27 C 1.38164 * 119.94687 * 359.70042 * 26 23 22 28 28 C 1.50703 * 119.97364 * 180.31689 * 27 26 23 29 29 H 1.09004 * 109.46669 * 59.99628 * 1 2 3 30 30 H 1.08997 * 109.47234 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46959 * 300.00258 * 1 2 3 32 32 H 1.09003 * 109.46959 * 239.99742 * 2 1 3 33 33 H 1.09004 * 109.46669 * 120.00372 * 2 1 3 34 34 H 0.97000 * 119.99932 * 179.97438 * 7 6 4 35 35 H 1.08995 * 109.46793 * 180.02562 * 14 12 3 36 36 H 1.09000 * 109.46702 * 299.99888 * 14 12 3 37 37 H 1.08994 * 109.46892 * 60.00082 * 14 12 3 38 38 H 1.09006 * 109.46502 * 185.00292 * 15 12 3 39 39 H 1.08999 * 109.46868 * 65.00567 * 15 12 3 40 40 H 0.97005 * 119.99937 * 0.02562 * 16 15 12 41 41 H 1.09000 * 109.47256 * 300.27859 * 19 17 16 42 42 H 1.08999 * 109.46649 * 60.27728 * 19 17 16 43 43 H 1.08005 * 119.97351 * 359.97438 * 21 20 19 44 44 H 1.07998 * 120.02421 * 180.02562 * 22 21 20 45 45 H 1.09003 * 109.46727 * 60.00392 * 25 24 23 46 46 H 1.09002 * 109.46837 * 179.97438 * 25 24 23 47 47 H 1.08994 * 109.47101 * 300.00200 * 25 24 23 48 48 H 1.08005 * 120.02766 * 180.02562 * 26 23 22 49 49 H 1.08992 * 109.47131 * 270.25164 * 28 27 26 50 50 H 1.08999 * 109.47257 * 30.25741 * 28 27 26 51 51 H 1.09004 * 109.46953 * 150.24798 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1576 2.0582 -1.1821 5 1 1.8871 3.1021 -1.2416 6 6 2.6462 1.4028 -2.3039 7 7 2.3642 1.8573 -3.5066 8 14 3.7040 -0.1241 -2.1069 9 1 2.8509 -1.3347 -2.2161 10 1 4.7390 -0.1502 -3.1715 11 1 4.3630 -0.1015 -0.7763 12 6 2.3581 2.0380 1.2648 13 1 2.7008 3.0534 1.0662 14 6 3.4692 1.2530 1.9648 15 6 1.1211 2.0833 2.1641 16 7 0.0196 2.7304 1.4472 17 6 -1.1779 2.8820 2.0469 18 8 -1.3433 2.4831 3.1802 19 6 -2.3092 3.5532 1.3117 20 6 -3.5261 3.6023 2.1993 21 6 -4.4890 2.6142 2.1057 22 6 -5.6051 2.6565 2.9184 23 6 -5.7597 3.6919 3.8290 24 8 -6.8566 3.7355 4.6302 25 6 -7.8106 2.6820 4.4819 26 6 -4.7929 4.6824 3.9202 27 6 -3.6757 4.6324 3.1090 28 6 -2.6214 5.7043 3.2126 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.7060 1.3996 -4.2905 35 1 3.7216 1.7414 2.9060 36 1 3.1268 0.2374 2.1634 37 1 4.3504 1.2207 1.3241 38 1 1.3492 2.6495 3.0673 39 1 0.8316 1.0680 2.4352 40 1 0.1518 3.0491 0.5406 41 1 -2.0157 4.5675 1.0413 42 1 -2.5408 2.9890 0.4084 43 1 -4.3684 1.8086 1.3964 44 1 -6.3566 1.8843 2.8451 45 1 -7.3316 1.7258 4.6929 46 1 -8.6343 2.8369 5.1788 47 1 -8.1932 2.6793 3.4613 48 1 -4.9108 5.4892 4.6285 49 1 -2.8621 6.5179 2.5285 50 1 -2.5896 6.0851 4.2334 51 1 -1.6499 5.2849 2.9509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153580949.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:55 Heat of formation + Delta-G solvation = -51.365300 kcal Electronic energy + Delta-G solvation = -29676.128497 eV Core-core repulsion = 25768.706402 eV Total energy + Delta-G solvation = -3907.422095 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.40683 -40.54318 -39.03376 -38.35808 -35.35635 -33.93149 -33.58954 -33.17385 -32.66733 -30.43492 -29.62960 -27.90965 -27.44812 -26.31990 -25.49010 -23.99272 -23.22125 -21.94870 -21.05008 -20.67436 -18.78334 -18.66805 -17.88200 -17.59458 -17.45247 -17.19932 -16.62856 -16.39324 -15.98144 -15.85934 -15.20431 -15.01230 -14.81173 -14.69106 -14.55555 -14.41661 -14.19007 -14.17035 -13.91268 -13.70440 -13.41984 -13.15280 -13.05301 -12.95013 -12.85337 -12.78143 -12.65661 -12.60241 -12.54034 -12.25167 -12.10215 -11.80033 -11.77355 -11.68975 -11.37924 -11.32323 -10.78721 -10.52528 -9.84384 -9.71130 -9.01620 -8.69454 -8.14508 -5.51278 0.39089 0.43954 1.34307 1.45576 1.54752 1.79368 2.36192 2.41349 2.48159 2.85791 3.10962 3.36747 3.76168 3.82381 3.96309 4.04402 4.15704 4.20049 4.31507 4.32620 4.38481 4.38712 4.42445 4.45017 4.55339 4.61520 4.67979 4.71857 4.74618 4.75929 4.80274 4.81250 4.84648 4.88409 4.91644 5.04347 5.10477 5.18974 5.23731 5.30965 5.35645 5.40246 5.42537 5.54789 5.68766 5.70980 5.84022 6.01837 6.27283 6.46220 6.75694 7.06539 7.41033 7.69829 8.15269 9.04168 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019898 B = 0.002630 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.830673 B =10645.124821 C =10901.498036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.129 3.871 3 N -0.603 5.603 4 C -0.242 4.242 5 H 0.058 0.942 6 C -0.011 4.011 7 N -0.942 5.942 8 Si 0.927 3.073 9 H -0.286 1.286 10 H -0.318 1.318 11 H -0.256 1.256 12 C 0.156 3.844 13 H 0.075 0.925 14 C -0.157 4.157 15 C 0.119 3.881 16 N -0.707 5.707 17 C 0.514 3.486 18 O -0.580 6.580 19 C -0.097 4.097 20 C -0.112 4.112 21 C -0.077 4.077 22 C -0.217 4.217 23 C 0.116 3.884 24 O -0.335 6.335 25 C 0.019 3.981 26 C -0.168 4.168 27 C -0.039 4.039 28 C -0.114 4.114 29 H 0.037 0.963 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.025 0.975 33 H 0.060 0.940 34 H 0.259 0.741 35 H 0.077 0.923 36 H 0.052 0.948 37 H 0.043 0.957 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.410 0.590 41 H 0.119 0.881 42 H 0.111 0.889 43 H 0.133 0.867 44 H 0.146 0.854 45 H 0.059 0.941 46 H 0.120 0.880 47 H 0.065 0.935 48 H 0.137 0.863 49 H 0.092 0.908 50 H 0.075 0.925 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.636 3.260 14.253 20.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.004 3.996 3 N -0.326 5.326 4 C -0.372 4.372 5 H 0.075 0.925 6 C -0.208 4.208 7 N -0.586 5.586 8 Si 0.758 3.242 9 H -0.214 1.214 10 H -0.247 1.247 11 H -0.180 1.180 12 C 0.049 3.951 13 H 0.093 0.907 14 C -0.216 4.216 15 C -0.007 4.007 16 N -0.358 5.358 17 C 0.301 3.699 18 O -0.461 6.461 19 C -0.136 4.136 20 C -0.112 4.112 21 C -0.095 4.095 22 C -0.236 4.236 23 C 0.071 3.929 24 O -0.249 6.249 25 C -0.075 4.075 26 C -0.187 4.187 27 C -0.040 4.040 28 C -0.171 4.171 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.246 0.754 41 H 0.137 0.863 42 H 0.129 0.871 43 H 0.150 0.850 44 H 0.163 0.837 45 H 0.077 0.923 46 H 0.139 0.861 47 H 0.083 0.917 48 H 0.155 0.845 49 H 0.111 0.889 50 H 0.094 0.906 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.752 3.102 15.051 21.302 hybrid contribution 0.698 -1.116 -1.128 1.734 sum -14.053 1.986 13.923 19.882 Atomic orbital electron populations 1.22205 0.97611 1.00235 1.01328 1.21092 0.93714 0.86188 0.98610 1.44264 1.74868 1.11508 1.02004 1.18630 1.36167 0.95891 0.86525 0.92483 1.25981 0.99172 1.00419 0.95192 1.69985 1.46703 1.43774 0.98118 0.86117 0.79643 0.81240 0.77227 1.21404 1.24735 1.18037 1.20876 0.91899 0.97054 0.85245 0.90722 1.22151 0.98399 1.00605 1.00463 1.21743 0.87107 0.97022 0.94793 1.46001 1.10945 1.59817 1.19017 1.20832 0.83772 0.78916 0.86381 1.90663 1.83333 1.51962 1.20134 1.20638 0.90779 1.03812 0.98372 1.19237 0.96129 0.96507 0.99350 1.21022 0.92935 0.97313 0.98189 1.21351 1.01430 1.00719 1.00064 1.19146 0.87746 0.95034 0.91022 1.86023 1.30621 1.50044 1.58253 1.23320 0.91123 0.89267 1.03828 1.20411 0.94151 1.00439 1.03664 1.19726 0.94763 0.95993 0.93475 1.20860 0.96010 0.96563 1.03652 0.94342 0.93084 0.92281 0.95720 0.92210 0.93198 0.90403 0.92925 0.93747 0.91413 0.92989 0.75396 0.86317 0.87132 0.84957 0.83665 0.92262 0.86144 0.91680 0.84465 0.88932 0.90598 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.52 9.83 71.98 0.71 -4.81 16 2 C 0.13 5.03 4.70 86.38 0.41 5.43 16 3 N -0.60 -24.38 1.42 -678.01 -0.96 -25.34 16 4 C -0.24 -11.97 9.50 84.03 0.80 -11.17 16 5 H 0.06 3.03 8.06 -2.91 -0.02 3.01 16 6 C -0.01 -0.57 5.29 84.86 0.45 -0.12 16 7 N -0.94 -55.15 13.97 21.65 0.30 -54.85 16 8 Si 0.93 44.10 25.23 68.60 1.73 45.83 16 9 H -0.29 -13.40 6.66 99.48 0.66 -12.74 16 10 H -0.32 -15.75 7.11 99.48 0.71 -15.04 16 11 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 12 C 0.16 5.17 2.87 44.99 0.13 5.30 16 13 H 0.07 2.54 7.89 -2.39 -0.02 2.52 16 14 C -0.16 -4.65 9.18 71.98 0.66 -3.98 16 15 C 0.12 3.63 4.33 86.38 0.37 4.01 16 16 N -0.71 -21.40 3.99 -463.05 -1.85 -23.25 16 17 C 0.51 15.56 6.78 87.66 0.59 16.16 16 18 O -0.58 -21.44 16.03 -3.02 -0.05 -21.49 16 19 C -0.10 -2.36 5.15 29.10 0.15 -2.21 16 20 C -0.11 -2.89 4.37 -19.85 -0.09 -2.97 16 21 C -0.08 -1.90 9.67 22.26 0.22 -1.68 16 22 C -0.22 -4.97 9.04 22.37 0.20 -4.77 16 23 C 0.12 2.82 6.69 22.50 0.15 2.97 16 24 O -0.34 -7.32 10.50 -92.45 -0.97 -8.29 16 25 C 0.02 0.25 9.81 113.37 1.11 1.36 16 26 C -0.17 -4.14 9.64 22.36 0.22 -3.92 16 27 C -0.04 -0.98 5.88 -19.88 -0.12 -1.10 16 28 C -0.11 -2.33 9.21 71.24 0.66 -1.68 16 29 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 2.02 4.89 -2.39 -0.01 2.01 16 32 H 0.02 1.09 3.44 -2.39 -0.01 1.08 16 33 H 0.06 2.09 6.44 -2.38 -0.02 2.07 16 34 H 0.26 14.69 8.31 -92.71 -0.77 13.91 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.05 1.52 6.66 -2.39 -0.02 1.50 16 37 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.05 1.69 6.96 -2.39 -0.02 1.67 16 40 H 0.41 12.95 7.89 -92.70 -0.73 12.22 16 41 H 0.12 2.44 7.00 -2.39 -0.02 2.42 16 42 H 0.11 2.48 8.05 -2.39 -0.02 2.46 16 43 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 44 H 0.15 2.56 6.30 -2.91 -0.02 2.54 16 45 H 0.06 0.72 7.66 -2.39 -0.02 0.71 16 46 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.06 0.71 7.66 -2.39 -0.02 0.70 16 48 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 49 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.08 1.40 8.09 -2.39 -0.02 1.38 16 51 H 0.06 1.34 6.14 -2.38 -0.01 1.32 16 Total: -1.00 -66.11 398.50 4.98 -61.13 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.16 Total: 29.44 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 6.62 Total: -3.20 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -2.51 Total: -103.43 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -1.02 Total: -29.78 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.73 Total: 45.83 kcal Total: -66.11 4.98 -61.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153580949.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.767 kcal (2) G-P(sol) polarization free energy of solvation -66.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds