Wall clock time and date at job start Tue Mar 31 2020 19:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47472 * 2 1 4 4 C 1.36939 * 119.99615 * 275.73244 * 3 2 1 5 5 H 1.08003 * 120.00376 * 33.26548 * 4 3 2 6 6 C 1.38814 * 119.99583 * 213.27238 * 4 3 2 7 7 N 1.31621 * 120.00296 * 17.26806 * 6 4 3 8 8 Si 1.86799 * 119.99681 * 197.27313 * 6 4 3 9 9 H 1.48503 * 109.47474 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47424 * 119.99724 * 8 6 4 11 11 H 1.48508 * 109.47149 * 240.00023 * 8 6 4 12 12 C 1.46500 * 120.00399 * 95.73061 * 3 2 1 13 13 H 1.08996 * 109.47374 * 180.08294 * 12 3 2 14 14 C 1.52999 * 109.46914 * 60.07917 * 12 3 2 15 15 C 1.53003 * 109.46849 * 300.08129 * 12 3 2 16 16 N 1.46496 * 109.47212 * 304.99870 * 15 12 3 17 17 C 1.34774 * 120.00307 * 180.02562 * 16 15 12 18 18 O 1.21279 * 119.99578 * 359.97438 * 17 16 15 19 19 C 1.50702 * 120.00393 * 180.02562 * 17 16 15 20 20 H 1.09000 * 109.47010 * 60.00165 * 19 17 16 21 21 C 1.53003 * 109.46930 * 300.00048 * 19 17 16 22 22 O 1.42903 * 109.47243 * 180.02562 * 19 17 16 23 23 C 1.42898 * 113.99736 * 210.00136 * 22 19 17 24 24 C 1.50700 * 109.46731 * 179.97438 * 23 22 19 25 25 C 1.38229 * 120.00480 * 269.72566 * 24 23 22 26 26 C 1.38241 * 120.00161 * 179.76996 * 25 24 23 27 27 C 1.38226 * 119.99760 * 0.50385 * 26 25 24 28 28 C 1.38241 * 120.00393 * 359.74947 * 27 26 25 29 29 C 1.38234 * 119.99729 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.46646 * 300.00666 * 1 2 3 31 31 H 1.08999 * 109.46469 * 59.99983 * 1 2 3 32 32 H 1.08991 * 109.47317 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47356 * 239.99535 * 2 1 3 34 34 H 1.09003 * 109.47063 * 119.99602 * 2 1 3 35 35 H 0.96998 * 119.99613 * 180.02562 * 7 6 4 36 36 H 1.08994 * 109.47359 * 60.00351 * 14 12 3 37 37 H 1.09003 * 109.46937 * 180.02562 * 14 12 3 38 38 H 1.09006 * 109.47324 * 299.99835 * 14 12 3 39 39 H 1.09000 * 109.46913 * 185.00036 * 15 12 3 40 40 H 1.09004 * 109.47153 * 64.99864 * 15 12 3 41 41 H 0.97007 * 119.99842 * 0.02562 * 16 15 12 42 42 H 1.08994 * 109.46921 * 179.97438 * 21 19 17 43 43 H 1.08992 * 109.46767 * 300.00082 * 21 19 17 44 44 H 1.08997 * 109.46720 * 60.00142 * 21 19 17 45 45 H 1.09002 * 109.47472 * 60.00159 * 23 22 19 46 46 H 1.08995 * 109.47208 * 299.99503 * 23 22 19 47 47 H 1.08002 * 119.99844 * 0.02562 * 25 24 23 48 48 H 1.07995 * 119.99886 * 180.23065 * 26 25 24 49 49 H 1.08003 * 120.00212 * 179.72548 * 27 26 25 50 50 H 1.08001 * 120.00103 * 179.97438 * 28 27 26 51 51 H 1.07993 * 119.99792 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1350 2.0661 -1.1800 5 1 1.4371 1.8809 -1.9832 6 6 3.1503 2.9984 -1.3439 7 7 4.1874 2.9915 -0.5334 8 14 3.0447 4.2630 -2.7148 9 1 1.7889 4.0591 -3.4808 10 1 3.0526 5.6282 -2.1307 11 1 4.2090 4.1065 -3.6233 12 6 2.3821 2.0296 1.2623 13 1 2.7192 3.0471 1.0643 14 6 3.5077 1.2412 1.9349 15 6 1.1630 2.0671 2.1861 16 7 0.0468 2.7177 1.4956 17 6 -1.1385 2.8645 2.1201 18 8 -1.2811 2.4575 3.2536 19 6 -2.2869 3.5333 1.4095 20 1 -2.5322 2.9725 0.5076 21 6 -1.8897 4.9613 1.0300 22 8 -3.4251 3.5694 2.2728 23 6 -4.6773 3.5274 1.5856 24 6 -5.8019 3.5699 2.5878 25 6 -6.3140 2.3936 3.1025 26 6 -7.3424 2.4328 4.0255 27 6 -7.8657 3.6480 4.4258 28 6 -7.3572 4.8242 3.9072 29 6 -6.3250 4.7852 2.9886 30 1 -0.3632 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.8966 3.6433 -0.6478 36 1 4.3761 1.2145 1.2768 37 1 3.7779 1.7234 2.8744 38 1 3.1705 0.2237 2.1331 39 1 1.4081 2.6272 3.0885 40 1 0.8800 1.0495 2.4557 41 1 0.1608 3.0429 0.5888 42 1 -2.7202 5.4448 0.5157 43 1 -1.6445 5.5219 1.9319 44 1 -1.0215 4.9341 0.3717 45 1 -4.7428 2.6069 1.0054 46 1 -4.7537 4.3846 0.9168 47 1 -5.9078 1.4440 2.7867 48 1 -7.7399 1.5140 4.4304 49 1 -8.6722 3.6785 5.1436 50 1 -7.7664 5.7736 4.2197 51 1 -5.9280 5.7040 2.5831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154278769.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:38 Heat of formation + Delta-G solvation = -40.510474 kcal Electronic energy + Delta-G solvation = -29568.360664 eV Core-core repulsion = 25661.409269 eV Total energy + Delta-G solvation = -3906.951395 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.80570 -39.26105 -37.59305 -36.67464 -33.69759 -32.62661 -31.90706 -31.32709 -31.07757 -30.36050 -28.18390 -26.32933 -25.71540 -23.97074 -23.44513 -22.75250 -21.70169 -21.49726 -19.77941 -19.27120 -17.44275 -17.11515 -16.80937 -16.49232 -15.83716 -15.39475 -15.18439 -15.02050 -14.70132 -14.44808 -14.04200 -13.80369 -13.57325 -13.45572 -13.14525 -12.99349 -12.72474 -12.61738 -12.45895 -12.29090 -12.15331 -11.95925 -11.82431 -11.54612 -11.39173 -11.19268 -11.10062 -11.01892 -10.96456 -10.84760 -10.67461 -10.30879 -10.09870 -9.88206 -9.65799 -9.44917 -9.17518 -9.08729 -8.97339 -8.55002 -8.37342 -6.69721 -5.91378 -3.40129 1.08074 1.23398 3.05468 3.17563 3.27112 3.36983 3.37860 3.68872 4.19781 4.38579 4.62666 4.69004 4.82266 4.90413 4.95908 5.03917 5.13514 5.17937 5.20491 5.24314 5.35695 5.38286 5.46897 5.65273 5.72506 5.78208 5.86061 5.91134 6.03606 6.13518 6.18186 6.25075 6.25846 6.31531 6.37075 6.42974 6.48117 6.53834 6.62034 6.67110 6.79963 6.82239 6.89232 7.01148 7.12682 7.14067 7.47198 7.56562 7.74240 8.16356 8.40149 8.76074 9.13061 9.74576 10.32037 11.15157 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016802 B = 0.002676 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.020920 B =10460.864816 C =11167.980827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.140 3.860 3 N -0.583 5.583 4 C -0.262 4.262 5 H 0.064 0.936 6 C 0.011 3.989 7 N -0.890 5.890 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.290 1.290 12 C 0.177 3.823 13 H 0.100 0.900 14 C -0.144 4.144 15 C 0.104 3.896 16 N -0.699 5.699 17 C 0.507 3.493 18 O -0.539 6.539 19 C 0.070 3.930 20 H 0.085 0.915 21 C -0.171 4.171 22 O -0.350 6.350 23 C 0.099 3.901 24 C -0.086 4.086 25 C -0.095 4.095 26 C -0.124 4.124 27 C -0.117 4.117 28 C -0.126 4.126 29 C -0.098 4.098 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.032 0.968 33 H 0.040 0.960 34 H 0.037 0.963 35 H 0.254 0.746 36 H 0.078 0.922 37 H 0.033 0.967 38 H 0.029 0.971 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.410 0.590 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.124 0.876 48 H 0.123 0.877 49 H 0.121 0.879 50 H 0.122 0.878 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.190 2.211 4.403 18.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.392 4.392 5 H 0.082 0.918 6 C -0.189 4.189 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.217 1.217 12 C 0.069 3.931 13 H 0.118 0.882 14 C -0.204 4.204 15 C -0.022 4.022 16 N -0.351 5.351 17 C 0.291 3.709 18 O -0.416 6.416 19 C 0.009 3.991 20 H 0.103 0.897 21 C -0.229 4.229 22 O -0.268 6.268 23 C 0.022 3.978 24 C -0.086 4.086 25 C -0.114 4.114 26 C -0.142 4.142 27 C -0.135 4.135 28 C -0.144 4.144 29 C -0.116 4.116 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.247 0.753 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.142 0.858 48 H 0.141 0.859 49 H 0.139 0.861 50 H 0.140 0.860 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.099 2.022 5.400 18.995 hybrid contribution 0.098 0.794 -1.417 1.627 sum -18.001 2.817 3.983 18.650 Atomic orbital electron populations 1.22455 1.00133 0.99022 1.01438 1.20752 0.91630 0.87471 0.98747 1.43896 1.75970 1.08279 1.02280 1.19116 1.08571 1.18160 0.93360 0.91828 1.25164 0.94547 1.01400 0.97797 1.70016 1.07867 1.35859 1.39491 0.86355 0.77641 0.81623 0.81900 1.20193 1.21514 1.21716 1.20497 0.88889 0.99521 0.84171 0.88233 1.22021 1.01111 0.97974 0.99254 1.22168 0.87955 0.96251 0.95792 1.45904 1.10663 1.59457 1.19094 1.20212 0.83802 0.79955 0.86899 1.90673 1.82943 1.49691 1.18325 1.21937 0.86755 0.97164 0.93283 0.89681 1.22243 1.02577 0.95322 1.02733 1.88121 1.11810 1.94773 1.32092 1.21411 0.82608 1.00956 0.92816 1.19592 0.96371 0.93628 0.98978 1.21116 0.95969 0.97988 0.96285 1.21151 0.97147 0.98046 0.97877 1.21185 0.99931 0.92682 0.99698 1.21135 0.97249 0.98334 0.97655 1.21075 0.96147 0.97304 0.97113 0.92976 0.93506 0.94851 0.94116 0.94493 0.93576 0.90287 0.94825 0.95147 0.92942 0.92850 0.75296 0.91623 0.91218 0.90349 0.92292 0.92290 0.85825 0.85926 0.86115 0.85986 0.85926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 9.87 37.16 0.37 -2.65 16 2 C 0.14 2.78 5.67 -4.04 -0.02 2.76 16 3 N -0.58 -12.78 1.85 -165.66 -0.31 -13.08 16 4 C -0.26 -6.33 9.26 -15.06 -0.14 -6.47 16 5 H 0.06 1.54 7.89 -52.48 -0.41 1.13 16 6 C 0.01 0.28 4.85 -17.43 -0.08 0.19 16 7 N -0.89 -23.22 10.61 55.49 0.59 -22.63 16 8 Si 0.90 19.76 29.59 -169.99 -5.03 14.73 16 9 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.18 3.72 1.92 -67.93 -0.13 3.59 16 13 H 0.10 2.38 6.04 -51.93 -0.31 2.07 16 14 C -0.14 -2.93 9.05 37.16 0.34 -2.59 16 15 C 0.10 1.99 4.34 -4.04 -0.02 1.98 16 16 N -0.70 -12.51 3.88 -60.29 -0.23 -12.75 16 17 C 0.51 9.16 7.00 -10.99 -0.08 9.09 16 18 O -0.54 -11.82 16.50 -14.35 -0.24 -12.06 16 19 C 0.07 1.00 3.14 -27.88 -0.09 0.92 16 20 H 0.09 1.06 7.79 -51.93 -0.40 0.66 16 21 C -0.17 -2.10 9.42 37.16 0.35 -1.75 16 22 O -0.35 -5.35 9.50 -55.14 -0.52 -5.87 16 23 C 0.10 1.14 5.87 36.01 0.21 1.35 16 24 C -0.09 -1.00 5.51 -104.62 -0.58 -1.58 16 25 C -0.10 -1.07 9.70 -39.58 -0.38 -1.45 16 26 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 27 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 28 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 29 C -0.10 -1.03 9.70 -39.58 -0.38 -1.42 16 30 H 0.05 0.95 4.99 -51.93 -0.26 0.69 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 34 H 0.04 0.71 6.45 -51.93 -0.33 0.38 16 35 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16 36 H 0.08 1.82 7.39 -51.93 -0.38 1.43 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.03 0.57 6.67 -51.93 -0.35 0.23 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 1.06 7.05 -51.93 -0.37 0.69 16 41 H 0.41 7.33 7.31 -40.82 -0.30 7.03 16 42 H 0.06 0.66 7.87 -51.93 -0.41 0.25 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.08 0.95 7.56 -51.93 -0.39 0.56 16 45 H 0.06 0.62 8.03 -51.93 -0.42 0.20 16 46 H 0.06 0.56 7.81 -51.93 -0.41 0.16 16 47 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 48 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 49 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 50 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 51 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 408.94 15.07 6.16 6.16 Total: -1.00 -29.36 408.94 -9.94 -39.30 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -8.53 Total: 8.86 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -1.83 Total: -2.67 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.05 Total: -48.46 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.76 Total: -17.93 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.03 Total: 14.73 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -29.36 -9.94 -39.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154278769.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.210 kcal (2) G-P(sol) polarization free energy of solvation -29.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds