Wall clock time and date at job start Tue Mar 31 2020 19:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47472 * 2 1 4 4 C 1.36939 * 119.99615 * 275.73244 * 3 2 1 5 5 H 1.08003 * 120.00376 * 33.26548 * 4 3 2 6 6 C 1.38814 * 119.99583 * 213.27238 * 4 3 2 7 7 N 1.31621 * 120.00296 * 17.26806 * 6 4 3 8 8 Si 1.86799 * 119.99681 * 197.27313 * 6 4 3 9 9 H 1.48503 * 109.47474 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47424 * 119.99724 * 8 6 4 11 11 H 1.48508 * 109.47149 * 240.00023 * 8 6 4 12 12 C 1.46500 * 120.00399 * 95.73061 * 3 2 1 13 13 H 1.08996 * 109.47374 * 180.08294 * 12 3 2 14 14 C 1.52999 * 109.46914 * 60.07917 * 12 3 2 15 15 C 1.53003 * 109.46849 * 300.08129 * 12 3 2 16 16 N 1.46496 * 109.47212 * 304.99870 * 15 12 3 17 17 C 1.34774 * 120.00307 * 180.02562 * 16 15 12 18 18 O 1.21279 * 119.99578 * 359.97438 * 17 16 15 19 19 C 1.50702 * 120.00393 * 180.02562 * 17 16 15 20 20 H 1.09000 * 109.47010 * 60.00165 * 19 17 16 21 21 C 1.53003 * 109.46930 * 300.00048 * 19 17 16 22 22 O 1.42903 * 109.47243 * 180.02562 * 19 17 16 23 23 C 1.42898 * 113.99736 * 210.00136 * 22 19 17 24 24 C 1.50700 * 109.46731 * 179.97438 * 23 22 19 25 25 C 1.38229 * 120.00480 * 269.72566 * 24 23 22 26 26 C 1.38241 * 120.00161 * 179.76996 * 25 24 23 27 27 C 1.38226 * 119.99760 * 0.50385 * 26 25 24 28 28 C 1.38241 * 120.00393 * 359.74947 * 27 26 25 29 29 C 1.38234 * 119.99729 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.46646 * 300.00666 * 1 2 3 31 31 H 1.08999 * 109.46469 * 59.99983 * 1 2 3 32 32 H 1.08991 * 109.47317 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47356 * 239.99535 * 2 1 3 34 34 H 1.09003 * 109.47063 * 119.99602 * 2 1 3 35 35 H 0.96998 * 119.99613 * 180.02562 * 7 6 4 36 36 H 1.08994 * 109.47359 * 60.00351 * 14 12 3 37 37 H 1.09003 * 109.46937 * 180.02562 * 14 12 3 38 38 H 1.09006 * 109.47324 * 299.99835 * 14 12 3 39 39 H 1.09000 * 109.46913 * 185.00036 * 15 12 3 40 40 H 1.09004 * 109.47153 * 64.99864 * 15 12 3 41 41 H 0.97007 * 119.99842 * 0.02562 * 16 15 12 42 42 H 1.08994 * 109.46921 * 179.97438 * 21 19 17 43 43 H 1.08992 * 109.46767 * 300.00082 * 21 19 17 44 44 H 1.08997 * 109.46720 * 60.00142 * 21 19 17 45 45 H 1.09002 * 109.47472 * 60.00159 * 23 22 19 46 46 H 1.08995 * 109.47208 * 299.99503 * 23 22 19 47 47 H 1.08002 * 119.99844 * 0.02562 * 25 24 23 48 48 H 1.07995 * 119.99886 * 180.23065 * 26 25 24 49 49 H 1.08003 * 120.00212 * 179.72548 * 27 26 25 50 50 H 1.08001 * 120.00103 * 179.97438 * 28 27 26 51 51 H 1.07993 * 119.99792 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1350 2.0661 -1.1800 5 1 1.4371 1.8809 -1.9832 6 6 3.1503 2.9984 -1.3439 7 7 4.1874 2.9915 -0.5334 8 14 3.0447 4.2630 -2.7148 9 1 1.7889 4.0591 -3.4808 10 1 3.0526 5.6282 -2.1307 11 1 4.2090 4.1065 -3.6233 12 6 2.3821 2.0296 1.2623 13 1 2.7192 3.0471 1.0643 14 6 3.5077 1.2412 1.9349 15 6 1.1630 2.0671 2.1861 16 7 0.0468 2.7177 1.4956 17 6 -1.1385 2.8645 2.1201 18 8 -1.2811 2.4575 3.2536 19 6 -2.2869 3.5333 1.4095 20 1 -2.5322 2.9725 0.5076 21 6 -1.8897 4.9613 1.0300 22 8 -3.4251 3.5694 2.2728 23 6 -4.6773 3.5274 1.5856 24 6 -5.8019 3.5699 2.5878 25 6 -6.3140 2.3936 3.1025 26 6 -7.3424 2.4328 4.0255 27 6 -7.8657 3.6480 4.4258 28 6 -7.3572 4.8242 3.9072 29 6 -6.3250 4.7852 2.9886 30 1 -0.3632 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.8966 3.6433 -0.6478 36 1 4.3761 1.2145 1.2768 37 1 3.7779 1.7234 2.8744 38 1 3.1705 0.2237 2.1331 39 1 1.4081 2.6272 3.0885 40 1 0.8800 1.0495 2.4557 41 1 0.1608 3.0429 0.5888 42 1 -2.7202 5.4448 0.5157 43 1 -1.6445 5.5219 1.9319 44 1 -1.0215 4.9341 0.3717 45 1 -4.7428 2.6069 1.0054 46 1 -4.7537 4.3846 0.9168 47 1 -5.9078 1.4440 2.7867 48 1 -7.7399 1.5140 4.4304 49 1 -8.6722 3.6785 5.1436 50 1 -7.7664 5.7736 4.2197 51 1 -5.9280 5.7040 2.5831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154278769.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:36 Heat of formation + Delta-G solvation = -54.283412 kcal Electronic energy + Delta-G solvation = -29568.957903 eV Core-core repulsion = 25661.409269 eV Total energy + Delta-G solvation = -3907.548634 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.05312 -40.18976 -38.89510 -38.14686 -35.27855 -33.79614 -33.51094 -32.69463 -31.80003 -31.53112 -29.89832 -27.32874 -27.04099 -25.76966 -24.67039 -23.48423 -23.30343 -22.26828 -21.18467 -20.96162 -18.88288 -18.28698 -18.12962 -17.50188 -16.89400 -16.77062 -16.43565 -16.33242 -16.07873 -15.79336 -15.41265 -15.06794 -14.85439 -14.31745 -14.28455 -14.26154 -13.99899 -13.88508 -13.78766 -13.49316 -13.40998 -13.31237 -13.16374 -12.98372 -12.80487 -12.68537 -12.54064 -12.42912 -12.34695 -11.99608 -11.92858 -11.86444 -11.81207 -11.34643 -11.15323 -11.00260 -10.47489 -10.41027 -9.91162 -9.82928 -9.76808 -8.51098 -7.79558 -5.29899 0.31634 0.49292 1.50975 1.56979 1.63729 1.65414 2.01757 2.56913 2.75804 3.20256 3.35117 3.65051 3.73315 3.87908 3.90159 3.98795 4.09168 4.14257 4.26490 4.28331 4.34354 4.38545 4.47383 4.57314 4.63516 4.68234 4.70163 4.75067 4.79225 4.81653 4.89688 4.94820 4.98740 5.06469 5.07703 5.14541 5.17708 5.23575 5.33800 5.51964 5.53814 5.59710 5.60427 5.66228 5.71540 5.78332 5.88292 6.05941 6.10994 6.52540 6.71958 7.25958 7.32678 7.94563 8.47757 9.24696 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016802 B = 0.002676 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.020920 B =10460.864816 C =11167.980827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.138 3.862 3 N -0.591 5.591 4 C -0.258 4.258 5 H 0.064 0.936 6 C -0.033 4.033 7 N -0.916 5.916 8 Si 0.952 3.048 9 H -0.264 1.264 10 H -0.292 1.292 11 H -0.303 1.303 12 C 0.184 3.816 13 H 0.072 0.928 14 C -0.136 4.136 15 C 0.116 3.884 16 N -0.693 5.693 17 C 0.505 3.495 18 O -0.582 6.582 19 C 0.075 3.925 20 H 0.108 0.892 21 C -0.165 4.165 22 O -0.377 6.377 23 C 0.095 3.905 24 C -0.108 4.108 25 C -0.117 4.117 26 C -0.133 4.133 27 C -0.120 4.120 28 C -0.131 4.131 29 C -0.111 4.111 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.032 0.968 34 H 0.041 0.959 35 H 0.248 0.752 36 H 0.049 0.951 37 H 0.048 0.952 38 H 0.041 0.959 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.412 0.588 42 H 0.093 0.907 43 H 0.057 0.943 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.081 0.919 47 H 0.122 0.878 48 H 0.141 0.859 49 H 0.146 0.854 50 H 0.146 0.854 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.421 2.685 3.998 20.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.013 3.987 3 N -0.313 5.313 4 C -0.388 4.388 5 H 0.082 0.918 6 C -0.231 4.231 7 N -0.561 5.561 8 Si 0.781 3.219 9 H -0.188 1.188 10 H -0.219 1.219 11 H -0.231 1.231 12 C 0.077 3.923 13 H 0.090 0.910 14 C -0.195 4.195 15 C -0.009 4.009 16 N -0.345 5.345 17 C 0.292 3.708 18 O -0.462 6.462 19 C 0.015 3.985 20 H 0.125 0.875 21 C -0.223 4.223 22 O -0.296 6.296 23 C 0.020 3.980 24 C -0.109 4.109 25 C -0.135 4.135 26 C -0.151 4.151 27 C -0.138 4.138 28 C -0.149 4.149 29 C -0.129 4.129 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.249 0.751 42 H 0.112 0.888 43 H 0.076 0.924 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.099 0.901 47 H 0.140 0.860 48 H 0.158 0.842 49 H 0.164 0.836 50 H 0.163 0.837 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -20.357 2.488 4.972 21.103 hybrid contribution 0.745 0.583 -1.245 1.564 sum -19.612 3.071 3.727 20.198 Atomic orbital electron populations 1.22264 0.98066 1.00288 1.00938 1.20835 0.93090 0.86271 0.98542 1.44016 1.76100 1.09132 1.02015 1.19292 1.07897 1.17806 0.93845 0.91808 1.25739 0.94504 1.03103 0.99725 1.70151 1.08450 1.36385 1.41074 0.85458 0.77365 0.79457 0.79573 1.18843 1.21881 1.23117 1.20326 0.89696 0.98017 0.84305 0.91011 1.21893 0.99703 0.98767 0.99159 1.21889 0.87667 0.96164 0.95230 1.45843 1.10549 1.59114 1.18975 1.20923 0.84403 0.79080 0.86426 1.90648 1.83682 1.51579 1.20304 1.21923 0.85352 0.98178 0.93093 0.87453 1.22219 1.03718 0.93910 1.02426 1.88088 1.13024 1.94956 1.33560 1.21604 0.81081 1.02296 0.93038 1.19778 0.96905 0.94307 0.99861 1.21305 0.96919 0.98041 0.97226 1.21451 0.96797 0.99344 0.97499 1.21558 1.00243 0.92297 0.99716 1.21492 0.96764 0.99592 0.97036 1.21328 0.96632 0.97393 0.97553 0.93704 0.93620 0.92736 0.94962 0.94054 0.94302 0.93199 0.93339 0.93999 0.93162 0.93208 0.75073 0.88802 0.92418 0.90238 0.91564 0.90124 0.85957 0.84154 0.83582 0.83667 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.22 9.87 71.98 0.71 -4.51 16 2 C 0.14 5.34 5.67 86.38 0.49 5.83 16 3 N -0.59 -25.66 1.85 -678.02 -1.25 -26.92 16 4 C -0.26 -12.30 9.26 84.03 0.78 -11.52 16 5 H 0.06 3.02 7.89 -2.91 -0.02 2.99 16 6 C -0.03 -1.65 4.85 84.86 0.41 -1.24 16 7 N -0.92 -48.52 10.61 21.65 0.23 -48.29 16 8 Si 0.95 40.54 29.59 68.60 2.03 42.57 16 9 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 10 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 12 C 0.18 7.77 1.92 44.99 0.09 7.85 16 13 H 0.07 3.49 6.04 -2.39 -0.01 3.47 16 14 C -0.14 -5.53 9.05 71.98 0.65 -4.88 16 15 C 0.12 4.45 4.34 86.38 0.37 4.82 16 16 N -0.69 -24.43 3.88 -463.06 -1.80 -26.23 16 17 C 0.51 17.98 7.00 87.66 0.61 18.60 16 18 O -0.58 -25.62 16.50 16.01 0.26 -25.36 16 19 C 0.08 2.06 3.14 29.85 0.09 2.15 16 20 H 0.11 2.42 7.79 -2.39 -0.02 2.40 16 21 C -0.17 -3.74 9.42 71.98 0.68 -3.06 16 22 O -0.38 -11.15 9.50 -129.94 -1.23 -12.39 16 23 C 0.10 2.07 5.87 71.24 0.42 2.49 16 24 C -0.11 -2.44 5.51 -19.87 -0.11 -2.55 16 25 C -0.12 -2.55 9.70 22.27 0.22 -2.34 16 26 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 27 C -0.12 -1.94 10.05 22.27 0.22 -1.72 16 28 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 29 C -0.11 -2.18 9.70 22.27 0.22 -1.96 16 30 H 0.04 1.56 4.99 -2.39 -0.01 1.55 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.03 1.29 8.09 -2.39 -0.02 1.27 16 34 H 0.04 1.55 6.45 -2.39 -0.02 1.53 16 35 H 0.25 12.97 8.31 -92.71 -0.77 12.20 16 36 H 0.05 2.32 7.39 -2.39 -0.02 2.30 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.04 1.57 6.67 -2.38 -0.02 1.55 16 39 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.05 1.95 7.05 -2.39 -0.02 1.93 16 41 H 0.41 14.36 7.31 -92.70 -0.68 13.68 16 42 H 0.09 1.59 7.87 -2.39 -0.02 1.57 16 43 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.08 1.78 7.56 -2.39 -0.02 1.76 16 45 H 0.07 1.29 8.03 -2.39 -0.02 1.27 16 46 H 0.08 1.35 7.81 -2.39 -0.02 1.33 16 47 H 0.12 2.54 8.06 -2.91 -0.02 2.52 16 48 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 49 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 50 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 51 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -63.33 408.94 4.77 -58.56 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: 0.23 Total: 34.25 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 6.30 Total: 3.79 kcal Atomic # 7 Polarization: -98.61 SS G_CDS: -2.82 Total: -101.43 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.97 Total: -37.75 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -63.33 4.77 -58.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154278769.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.272 kcal (2) G-P(sol) polarization free energy of solvation -63.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds