Wall clock time and date at job start Tue Mar 31 2020 19:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.47078 * 2 1 4 4 C 1.36931 * 120.00430 * 275.92007 * 3 2 1 5 5 H 1.08005 * 119.99695 * 34.06908 * 4 3 2 6 6 C 1.38809 * 120.00298 * 214.07825 * 4 3 2 7 7 N 1.31622 * 119.99784 * 17.03612 * 6 4 3 8 8 Si 1.86799 * 120.00271 * 197.04574 * 6 4 3 9 9 H 1.48497 * 109.47516 * 89.99415 * 8 6 4 10 10 H 1.48503 * 109.47239 * 209.99610 * 8 6 4 11 11 H 1.48504 * 109.46768 * 329.99341 * 8 6 4 12 12 C 1.46501 * 119.99522 * 95.91721 * 3 2 1 13 13 H 1.09005 * 109.46750 * 177.14634 * 12 3 2 14 14 C 1.52999 * 109.47389 * 57.14773 * 12 3 2 15 15 C 1.52998 * 109.47103 * 297.14458 * 12 3 2 16 16 N 1.46497 * 109.47622 * 305.00210 * 15 12 3 17 17 C 1.34768 * 120.00288 * 180.02562 * 16 15 12 18 18 O 1.21286 * 120.00126 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00179 * 179.97438 * 17 16 15 20 20 C 1.50703 * 109.47263 * 179.97438 * 19 17 16 21 21 C 1.38259 * 119.99997 * 269.72818 * 20 19 17 22 22 C 1.38210 * 119.99489 * 179.81277 * 21 20 19 23 23 C 1.38256 * 120.00567 * 0.41260 * 22 21 20 24 24 C 1.38219 * 119.99738 * 359.82057 * 23 22 21 25 25 C 1.50694 * 119.99874 * 179.97438 * 24 23 22 26 26 O 1.42906 * 109.47270 * 270.01828 * 25 24 23 27 27 C 1.42901 * 114.00048 * 179.97438 * 26 25 24 28 28 C 1.38217 * 119.99671 * 90.00423 * 20 19 17 29 29 H 1.08994 * 109.47518 * 59.99465 * 1 2 3 30 30 H 1.09003 * 109.47288 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46892 * 299.99785 * 1 2 3 32 32 H 1.08998 * 109.47236 * 240.00566 * 2 1 3 33 33 H 1.08994 * 109.47518 * 120.00535 * 2 1 3 34 34 H 0.96999 * 119.99872 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.46894 * 300.00154 * 14 12 3 36 36 H 1.09004 * 109.46869 * 59.99701 * 14 12 3 37 37 H 1.08999 * 109.47351 * 179.97438 * 14 12 3 38 38 H 1.08999 * 109.47088 * 65.00781 * 15 12 3 39 39 H 1.09008 * 109.46881 * 185.00128 * 15 12 3 40 40 H 0.97001 * 119.99583 * 0.02562 * 16 15 12 41 41 H 1.08999 * 109.47417 * 300.00315 * 19 17 16 42 42 H 1.09001 * 109.47212 * 59.99635 * 19 17 16 43 43 H 1.07997 * 120.00202 * 359.97438 * 21 20 19 44 44 H 1.08004 * 119.99681 * 180.21200 * 22 21 20 45 45 H 1.07994 * 120.00058 * 179.79124 * 23 22 21 46 46 H 1.08997 * 109.47442 * 30.02156 * 25 24 23 47 47 H 1.09002 * 109.47042 * 150.01786 * 25 24 23 48 48 H 1.09000 * 109.47255 * 300.00214 * 27 26 25 49 49 H 1.08997 * 109.46761 * 60.00337 * 27 26 25 50 50 H 1.08997 * 109.46780 * 179.97438 * 27 26 25 51 51 H 1.07994 * 120.00034 * 359.97051 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1312 2.0676 -1.1795 5 1 1.4230 1.8927 -1.9760 6 6 3.1559 2.9880 -1.3516 7 7 4.1988 2.9695 -0.5488 8 14 3.0548 4.2530 -2.7224 9 1 2.3770 5.4748 -2.2195 10 1 4.4250 4.5992 -3.1785 11 1 2.2821 3.6905 -3.8589 12 6 2.3857 2.0282 1.2620 13 1 2.7713 3.0274 1.0593 14 6 3.4622 1.1993 1.9656 15 6 1.1519 2.1303 2.1610 16 7 0.0790 2.8210 1.4412 17 6 -1.1104 3.0272 2.0404 18 8 -1.2925 2.6413 3.1758 19 6 -2.2138 3.7382 1.3003 20 6 -3.4292 3.8386 2.1857 21 6 -4.3831 2.8380 2.1665 22 6 -5.4957 2.9283 2.9814 23 6 -5.6591 4.0233 3.8095 24 6 -4.7079 5.0259 3.8252 25 6 -4.8862 6.2197 4.7273 26 8 -5.6047 7.2400 4.0309 27 6 -5.8292 8.4222 4.8018 28 6 -3.5930 4.9338 3.0128 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 4.9147 3.6129 -0.6688 35 1 3.0767 0.2001 2.1683 36 1 4.3412 1.1266 1.3251 37 1 3.7359 1.6808 2.9044 38 1 0.8191 1.1295 2.4362 39 1 1.4040 2.6899 3.0618 40 1 0.2248 3.1299 0.5334 41 1 -1.8807 4.7388 1.0250 42 1 -2.4662 3.1788 0.3994 43 1 -4.2575 1.9846 1.5166 44 1 -6.2392 2.1450 2.9689 45 1 -6.5302 4.0954 4.4437 46 1 -5.4446 5.9238 5.6154 47 1 -3.9088 6.6009 5.0231 48 1 -6.4074 8.1716 5.6912 49 1 -4.8716 8.8492 5.0994 50 1 -6.3796 9.1475 4.2026 51 1 -2.8498 5.7173 3.0248 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156330209.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:03 Heat of formation + Delta-G solvation = -59.903004 kcal Electronic energy + Delta-G solvation = -29267.894065 eV Core-core repulsion = 25360.101747 eV Total energy + Delta-G solvation = -3907.792318 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.05893 -40.06322 -38.67494 -38.33441 -35.15532 -34.08341 -33.70008 -32.73495 -32.49721 -29.95636 -29.12707 -28.12494 -26.49093 -26.22851 -25.75879 -23.38203 -23.08521 -22.09667 -21.06781 -20.76560 -18.75817 -17.88856 -17.63435 -17.29361 -17.09500 -17.04842 -16.52653 -16.45104 -16.24086 -15.99945 -15.38921 -15.30368 -14.98844 -14.59941 -14.28772 -14.05716 -13.95750 -13.82410 -13.58801 -13.48555 -13.31381 -13.29820 -13.15228 -12.78466 -12.75387 -12.72782 -12.53451 -12.37982 -12.33720 -12.02497 -11.97913 -11.82696 -11.81856 -11.34042 -11.15275 -10.84447 -10.67138 -10.41301 -9.84428 -9.75846 -9.60643 -8.49748 -7.79806 -5.31369 0.34053 0.46738 1.51510 1.56025 1.61510 1.77749 2.39735 2.56416 2.74372 3.21098 3.34226 3.67534 3.68561 3.85679 3.98303 4.12563 4.18518 4.26109 4.32141 4.34795 4.43457 4.48821 4.51660 4.54851 4.60123 4.61174 4.63775 4.70964 4.76927 4.82174 4.85559 4.90681 4.93701 5.00122 5.08008 5.10118 5.15166 5.24080 5.35290 5.52410 5.55762 5.61226 5.63836 5.66550 5.73202 5.79159 5.86813 6.07976 6.19065 6.52790 6.79285 7.26116 7.40756 7.94773 8.47892 9.23619 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013673 B = 0.002732 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.399624 B =10247.800908 C =11019.803153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.137 3.863 3 N -0.589 5.589 4 C -0.258 4.258 5 H 0.062 0.938 6 C -0.033 4.033 7 N -0.916 5.916 8 Si 0.953 3.047 9 H -0.283 1.283 10 H -0.305 1.305 11 H -0.273 1.273 12 C 0.180 3.820 13 H 0.072 0.928 14 C -0.136 4.136 15 C 0.117 3.883 16 N -0.701 5.701 17 C 0.510 3.490 18 O -0.586 6.586 19 C -0.099 4.099 20 C -0.075 4.075 21 C -0.113 4.113 22 C -0.125 4.125 23 C -0.108 4.108 24 C -0.107 4.107 25 C 0.105 3.895 26 O -0.410 6.410 27 C 0.024 3.976 28 C -0.103 4.103 29 H 0.043 0.957 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.030 0.970 33 H 0.043 0.957 34 H 0.248 0.752 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.411 0.589 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.130 0.870 44 H 0.147 0.853 45 H 0.142 0.858 46 H 0.074 0.926 47 H 0.060 0.940 48 H 0.055 0.945 49 H 0.048 0.952 50 H 0.096 0.904 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.354 4.765 8.359 20.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.012 3.988 3 N -0.311 5.311 4 C -0.388 4.388 5 H 0.080 0.920 6 C -0.230 4.230 7 N -0.560 5.560 8 Si 0.782 3.218 9 H -0.210 1.210 10 H -0.232 1.232 11 H -0.198 1.198 12 C 0.072 3.928 13 H 0.090 0.910 14 C -0.195 4.195 15 C -0.009 4.009 16 N -0.351 5.351 17 C 0.297 3.703 18 O -0.467 6.467 19 C -0.138 4.138 20 C -0.075 4.075 21 C -0.131 4.131 22 C -0.143 4.143 23 C -0.126 4.126 24 C -0.107 4.107 25 C 0.029 3.971 26 O -0.330 6.330 27 C -0.072 4.072 28 C -0.121 4.121 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.247 0.753 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.148 0.852 44 H 0.165 0.835 45 H 0.160 0.840 46 H 0.092 0.908 47 H 0.078 0.922 48 H 0.073 0.927 49 H 0.066 0.934 50 H 0.114 0.886 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.364 4.551 8.947 20.929 hybrid contribution 0.881 0.802 -0.881 1.482 sum -17.483 5.353 8.066 19.985 Atomic orbital electron populations 1.22223 0.97939 1.00227 1.00886 1.20851 0.93172 0.86278 0.98515 1.43980 1.76040 1.09106 1.02014 1.19246 1.07034 1.18343 0.94191 0.91988 1.25743 0.94465 1.03096 0.99732 1.70141 1.07811 1.36787 1.41309 0.85508 0.76017 0.80117 0.80142 1.20984 1.23195 1.19776 1.20373 0.90013 0.97937 0.84454 0.90986 1.21874 0.99611 0.98935 0.99060 1.21840 0.88770 0.95557 0.94706 1.45948 1.12333 1.57985 1.18845 1.20922 0.83577 0.79272 0.86526 1.90650 1.82350 1.53554 1.20174 1.20698 0.91001 1.03443 0.98705 1.19429 0.95154 0.95203 0.97723 1.21284 0.94239 0.98006 0.99549 1.21391 0.98130 0.98695 0.96077 1.21289 0.98616 0.93596 0.99133 1.19771 0.95543 0.96325 0.99029 1.21364 0.96517 0.85986 0.93238 1.87933 1.76595 1.26612 1.41881 1.22950 1.00989 0.86541 0.96724 1.21014 0.97709 0.97872 0.95518 0.93825 0.92699 0.93641 0.95153 0.93902 0.94297 0.93749 0.93592 0.93180 0.93312 0.93408 0.75289 0.86627 0.86180 0.85190 0.83498 0.84035 0.90751 0.92209 0.92671 0.93378 0.88560 0.86276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.13 9.95 71.98 0.72 -4.42 16 2 C 0.14 5.33 5.75 86.38 0.50 5.83 16 3 N -0.59 -25.79 1.88 -678.04 -1.28 -27.06 16 4 C -0.26 -12.43 9.07 84.03 0.76 -11.67 16 5 H 0.06 2.98 7.89 -2.91 -0.02 2.96 16 6 C -0.03 -1.65 4.86 84.86 0.41 -1.24 16 7 N -0.92 -48.97 10.90 21.65 0.24 -48.74 16 8 Si 0.95 41.22 29.59 68.60 2.03 43.25 16 9 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 10 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 11 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 12 C 0.18 7.59 1.95 44.99 0.09 7.68 16 13 H 0.07 3.53 5.94 -2.38 -0.01 3.51 16 14 C -0.14 -5.47 9.05 71.98 0.65 -4.82 16 15 C 0.12 4.44 4.36 86.38 0.38 4.82 16 16 N -0.70 -24.47 4.28 -463.07 -1.98 -26.45 16 17 C 0.51 17.09 7.78 87.66 0.68 17.77 16 18 O -0.59 -23.64 16.03 -3.05 -0.05 -23.69 16 19 C -0.10 -2.56 5.83 29.10 0.17 -2.39 16 20 C -0.07 -2.01 4.37 -19.86 -0.09 -2.10 16 21 C -0.11 -2.78 9.70 22.27 0.22 -2.57 16 22 C -0.13 -2.70 10.05 22.27 0.22 -2.47 16 23 C -0.11 -2.34 9.70 22.27 0.22 -2.12 16 24 C -0.11 -2.57 5.51 -19.87 -0.11 -2.68 16 25 C 0.10 2.07 6.06 71.23 0.43 2.50 16 26 O -0.41 -8.74 10.69 -148.98 -1.59 -10.33 16 27 C 0.02 0.32 11.01 113.37 1.25 1.57 16 28 C -0.10 -2.75 9.36 22.27 0.21 -2.54 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.04 1.57 5.32 -2.39 -0.01 1.56 16 32 H 0.03 1.23 8.09 -2.39 -0.02 1.21 16 33 H 0.04 1.60 6.29 -2.39 -0.02 1.59 16 34 H 0.25 13.13 8.31 -92.71 -0.77 12.36 16 35 H 0.04 1.64 6.56 -2.39 -0.02 1.62 16 36 H 0.04 2.12 7.69 -2.38 -0.02 2.10 16 37 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.05 1.88 6.98 -2.39 -0.02 1.87 16 39 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.41 14.57 7.74 -92.71 -0.72 13.86 16 41 H 0.12 2.60 8.09 -2.39 -0.02 2.58 16 42 H 0.12 2.64 8.08 -2.39 -0.02 2.62 16 43 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 44 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 45 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 46 H 0.07 1.17 8.09 -2.39 -0.02 1.15 16 47 H 0.06 1.12 8.09 -2.39 -0.02 1.10 16 48 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.12 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -61.95 411.42 4.26 -57.69 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: 0.19 Total: 34.18 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 6.70 Total: 1.16 kcal Atomic # 7 Polarization: -99.23 SS G_CDS: -3.02 Total: -102.25 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -1.64 Total: -34.03 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -61.95 4.26 -57.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156330209.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.216 kcal (2) G-P(sol) polarization free energy of solvation -61.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds