Wall clock time and date at job start Tue Mar 31 2020 19:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46873 * 2 1 4 4 C 1.36935 * 119.99905 * 274.97985 * 3 2 1 5 5 H 1.07998 * 120.00208 * 142.99904 * 4 3 2 6 6 C 1.38810 * 120.00091 * 322.99670 * 4 3 2 7 7 N 1.31622 * 120.00276 * 155.10801 * 6 4 3 8 8 Si 1.86805 * 120.00130 * 335.10837 * 6 4 3 9 9 H 1.48501 * 109.46947 * 95.40061 * 8 6 4 10 10 H 1.48500 * 109.47067 * 215.40200 * 8 6 4 11 11 H 1.48501 * 109.46926 * 335.39995 * 8 6 4 12 12 C 1.46497 * 119.99937 * 94.98148 * 3 2 1 13 13 H 1.09007 * 109.46783 * 179.97438 * 12 3 2 14 14 C 1.53003 * 109.47439 * 60.00161 * 12 3 2 15 15 C 1.53001 * 109.47366 * 299.99419 * 12 3 2 16 16 N 1.46493 * 109.47292 * 305.00775 * 15 12 3 17 17 C 1.34778 * 120.00239 * 179.97438 * 16 15 12 18 18 O 1.21285 * 119.99353 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00357 * 179.97438 * 17 16 15 20 20 C 1.52997 * 109.47254 * 87.05741 * 19 17 16 21 21 O 1.42898 * 109.46707 * 327.05676 * 19 17 16 22 22 C 1.42898 * 114.00255 * 299.99962 * 21 19 17 23 23 C 1.50698 * 109.47013 * 207.06043 * 19 17 16 24 24 C 1.38232 * 120.00390 * 39.90899 * 23 19 17 25 25 C 1.38236 * 120.00023 * 179.81215 * 24 23 19 26 26 C 1.38230 * 119.99801 * 0.39766 * 25 24 23 27 27 C 1.38229 * 120.00470 * 359.85929 * 26 25 24 28 28 C 1.38238 * 119.99849 * 359.95200 * 27 26 25 29 29 H 1.09003 * 109.46898 * 299.99830 * 1 2 3 30 30 H 1.08995 * 109.47372 * 60.00210 * 1 2 3 31 31 H 1.08997 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47165 * 240.00254 * 2 1 3 33 33 H 1.08995 * 109.47372 * 119.99790 * 2 1 3 34 34 H 0.96999 * 120.00664 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.47060 * 59.99633 * 14 12 3 36 36 H 1.08997 * 109.47354 * 179.97438 * 14 12 3 37 37 H 1.08999 * 109.46583 * 299.99771 * 14 12 3 38 38 H 1.09007 * 109.46257 * 65.00703 * 15 12 3 39 39 H 1.08993 * 109.47165 * 184.99630 * 15 12 3 40 40 H 0.97003 * 120.00385 * 359.97438 * 16 15 12 41 41 H 1.09007 * 109.47099 * 59.99651 * 20 19 17 42 42 H 1.08993 * 109.47237 * 180.02562 * 20 19 17 43 43 H 1.09007 * 109.47233 * 300.00380 * 20 19 17 44 44 H 1.09003 * 109.47316 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.46942 * 300.00126 * 22 21 19 46 46 H 1.08998 * 109.47117 * 60.00311 * 22 21 19 47 47 H 1.08002 * 120.00056 * 0.02562 * 24 23 19 48 48 H 1.08002 * 119.99817 * 180.23576 * 25 24 23 49 49 H 1.08004 * 119.99608 * 179.83304 * 26 25 24 50 50 H 1.08002 * 120.00324 * 179.97438 * 27 26 25 51 51 H 1.07996 * 120.00064 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1494 2.0611 -1.1814 5 1 1.9186 3.1152 -1.2264 6 6 2.5790 1.3955 -2.3212 7 7 2.2573 1.8545 -3.5121 8 14 3.6139 -0.1519 -2.1650 9 1 2.7339 -1.3456 -2.2400 10 1 4.6056 -0.1977 -3.2695 11 1 4.3251 -0.1422 -0.8614 12 6 2.3662 2.0351 1.2639 13 1 2.7076 3.0512 1.0654 14 6 3.4822 1.2487 1.9548 15 6 1.1354 2.0784 2.1716 16 7 0.0290 2.7269 1.4636 17 6 -1.1644 2.8771 2.0717 18 8 -1.3224 2.4748 3.2049 19 6 -2.3025 3.5448 1.3435 20 6 -3.0662 2.5017 0.5252 21 8 -1.7844 4.5497 0.4697 22 6 -1.0498 5.5778 1.1370 23 6 -3.2344 4.1800 2.3430 24 6 -2.7219 4.8281 3.4512 25 6 -3.5767 5.4142 4.3659 26 6 -4.9442 5.3450 4.1767 27 6 -5.4570 4.6923 3.0713 28 6 -4.6021 4.1096 2.1545 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.5572 1.3892 -4.3086 35 1 4.3591 1.2180 1.3080 36 1 3.7414 1.7355 2.8949 37 1 3.1412 0.2326 2.1532 38 1 0.8478 1.0623 2.4423 39 1 1.3694 2.6423 3.0745 40 1 0.1552 3.0483 0.5571 41 1 -3.4613 1.7351 1.1919 42 1 -3.8890 2.9847 -0.0017 43 1 -2.3921 2.0422 -0.1977 44 1 -0.6907 6.3014 0.4051 45 1 -1.6979 6.0795 1.8556 46 1 -0.2007 5.1371 1.6594 47 1 -1.6535 4.8796 3.6006 48 1 -3.1761 5.9238 5.2298 49 1 -5.6122 5.8005 4.8928 50 1 -6.5255 4.6379 2.9237 51 1 -5.0026 3.5993 1.2911 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156466229.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:30 Heat of formation + Delta-G solvation = -20.503811 kcal Electronic energy + Delta-G solvation = -31284.857973 eV Core-core repulsion = 27378.774132 eV Total energy + Delta-G solvation = -3906.083841 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.85767 -38.75672 -37.47418 -36.98627 -33.95115 -32.92648 -32.07343 -31.21084 -31.02792 -29.53758 -28.68257 -26.41772 -26.17588 -24.40691 -23.62804 -22.57478 -22.35525 -21.44361 -19.72934 -19.21531 -17.63950 -17.38559 -16.92463 -16.23760 -15.77702 -15.48510 -15.39918 -14.76604 -14.71556 -14.56826 -14.22975 -13.95407 -13.69430 -13.22726 -13.05148 -12.82647 -12.73509 -12.65173 -12.53599 -12.46244 -12.39969 -12.02838 -11.86318 -11.81541 -11.72979 -11.37078 -11.27515 -11.06270 -11.02293 -10.95049 -10.73849 -10.40332 -10.18154 -10.01011 -9.75535 -9.50138 -9.17426 -8.92452 -8.87570 -8.56295 -8.50655 -6.92326 -6.05347 -3.44988 1.22742 1.36606 2.80489 3.29911 3.37149 3.45266 3.49887 3.70769 3.92066 4.49295 4.49527 4.74461 4.86528 4.92121 5.01582 5.03040 5.14283 5.24846 5.37465 5.41223 5.41827 5.44563 5.53273 5.67442 5.71969 5.76566 5.81506 5.88856 5.91070 5.96801 5.97196 6.01124 6.12929 6.15624 6.21243 6.31827 6.38142 6.38619 6.43341 6.51855 6.58582 6.65986 6.73529 6.86374 6.89319 6.91509 7.03960 7.13783 7.96972 7.99817 8.30098 8.53521 8.93148 9.66297 10.07099 11.09568 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019430 B = 0.003561 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.731874 B = 7861.242471 C = 8250.519320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.133 3.867 3 N -0.598 5.598 4 C -0.272 4.272 5 H 0.079 0.921 6 C 0.043 3.957 7 N -0.893 5.893 8 Si 0.875 3.125 9 H -0.287 1.287 10 H -0.304 1.304 11 H -0.269 1.269 12 C 0.156 3.844 13 H 0.077 0.923 14 C -0.162 4.162 15 C 0.106 3.894 16 N -0.695 5.695 17 C 0.491 3.509 18 O -0.545 6.545 19 C 0.143 3.857 20 C -0.140 4.140 21 O -0.356 6.356 22 C 0.014 3.986 23 C -0.096 4.096 24 C -0.083 4.083 25 C -0.126 4.126 26 C -0.116 4.116 27 C -0.127 4.127 28 C -0.099 4.099 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.033 0.967 32 H 0.047 0.953 33 H 0.039 0.961 34 H 0.263 0.737 35 H 0.060 0.940 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.418 0.582 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.048 0.952 46 H 0.048 0.952 47 H 0.118 0.882 48 H 0.121 0.879 49 H 0.120 0.880 50 H 0.122 0.878 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.663 5.601 12.535 17.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.009 3.991 3 N -0.321 5.321 4 C -0.401 4.401 5 H 0.096 0.904 6 C -0.159 4.159 7 N -0.533 5.533 8 Si 0.705 3.295 9 H -0.216 1.216 10 H -0.232 1.232 11 H -0.194 1.194 12 C 0.048 3.952 13 H 0.095 0.905 14 C -0.222 4.222 15 C -0.020 4.020 16 N -0.347 5.347 17 C 0.275 3.725 18 O -0.423 6.423 19 C 0.100 3.900 20 C -0.197 4.197 21 O -0.274 6.274 22 C -0.082 4.082 23 C -0.097 4.097 24 C -0.101 4.101 25 C -0.144 4.144 26 C -0.134 4.134 27 C -0.145 4.145 28 C -0.117 4.117 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.257 0.743 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.112 0.888 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.136 0.864 48 H 0.139 0.861 49 H 0.138 0.862 50 H 0.140 0.860 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.737 5.309 12.919 17.618 hybrid contribution 0.825 -0.851 -0.192 1.201 sum -9.912 4.458 12.727 16.736 Atomic orbital electron populations 1.22358 0.98893 0.99261 1.02155 1.21035 0.92725 0.86652 0.98735 1.44227 1.74344 1.11391 1.02088 1.18689 1.41065 0.95593 0.84708 0.90375 1.25418 0.97651 0.97644 0.95152 1.69900 1.44478 1.41438 0.97455 0.86992 0.81309 0.83944 0.77224 1.21558 1.23234 1.19377 1.20756 0.90553 0.97345 0.86527 0.90454 1.22237 0.99924 1.00368 0.99631 1.21976 0.87735 0.97264 0.95031 1.46041 1.10431 1.58565 1.19617 1.20921 0.84295 0.80515 0.86780 1.90686 1.82691 1.50731 1.18222 1.20538 0.90990 0.88941 0.89495 1.21842 1.00748 0.96795 1.00299 1.88109 1.71116 1.35881 1.32301 1.23064 0.95208 0.90959 0.98953 1.19877 0.94251 0.99597 0.95960 1.21055 0.99868 0.95874 0.93311 1.21091 0.93573 1.00519 0.99260 1.21151 0.95288 0.99240 0.97727 1.21102 0.99575 0.98885 0.94983 1.21126 0.92375 0.98849 0.99320 0.93065 0.92119 0.94806 0.93518 0.94292 0.92725 0.92094 0.93436 0.93233 0.92034 0.92479 0.74315 0.90380 0.90345 0.90053 0.88821 0.93366 0.93393 0.86371 0.86119 0.86224 0.85997 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 9.84 37.16 0.37 -2.82 16 2 C 0.13 2.77 4.71 -4.04 -0.02 2.75 16 3 N -0.60 -12.69 1.46 -165.67 -0.24 -12.93 16 4 C -0.27 -6.88 9.51 -15.06 -0.14 -7.03 16 5 H 0.08 2.11 8.06 -52.49 -0.42 1.69 16 6 C 0.04 1.16 5.29 -17.43 -0.09 1.07 16 7 N -0.89 -25.87 13.97 55.49 0.78 -25.10 16 8 Si 0.87 21.44 25.20 -169.99 -4.28 17.15 16 9 H -0.29 -6.99 6.64 56.52 0.38 -6.61 16 10 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.16 2.77 2.87 -67.93 -0.19 2.57 16 13 H 0.08 1.40 7.89 -51.93 -0.41 0.99 16 14 C -0.16 -2.62 9.18 37.16 0.34 -2.28 16 15 C 0.11 1.74 4.33 -4.05 -0.02 1.72 16 16 N -0.69 -11.60 3.01 -60.30 -0.18 -11.78 16 17 C 0.49 8.15 4.59 -10.99 -0.05 8.10 16 18 O -0.54 -10.30 15.15 5.55 0.08 -10.21 16 19 C 0.14 2.12 1.01 -92.93 -0.09 2.02 16 20 C -0.14 -1.89 7.80 37.16 0.29 -1.60 16 21 O -0.36 -5.42 9.63 -35.23 -0.34 -5.76 16 22 C 0.01 0.19 9.52 101.05 0.96 1.15 16 23 C -0.10 -1.33 4.31 -104.62 -0.45 -1.78 16 24 C -0.08 -1.12 6.31 -39.58 -0.25 -1.37 16 25 C -0.13 -1.45 10.05 -39.59 -0.40 -1.85 16 26 C -0.12 -1.20 10.05 -39.59 -0.40 -1.60 16 27 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 28 C -0.10 -1.19 9.12 -39.58 -0.36 -1.55 16 29 H 0.05 0.94 4.92 -51.93 -0.26 0.68 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 1.08 3.19 -51.93 -0.17 0.91 16 33 H 0.04 0.74 6.44 -51.93 -0.33 0.40 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.79 6.66 -51.93 -0.35 0.44 16 38 H 0.06 1.07 6.99 -51.92 -0.36 0.71 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.42 7.58 7.21 -40.82 -0.29 7.28 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.08 0.90 6.69 -51.93 -0.35 0.55 16 43 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 44 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.05 0.58 5.68 -51.93 -0.30 0.29 16 46 H 0.05 0.64 6.54 -51.93 -0.34 0.30 16 47 H 0.12 1.66 6.50 -52.49 -0.34 1.31 16 48 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 49 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 50 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 51 H 0.13 1.33 5.98 -52.49 -0.31 1.02 16 LS Contribution 388.20 15.07 5.85 5.85 Total: -1.00 -29.98 388.20 -7.29 -37.27 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -8.04 Total: 9.74 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -0.91 Total: -4.23 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.35 Total: -49.81 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.26 Total: -15.97 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.28 Total: 17.15 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.98 -7.29 -37.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156466229.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.766 kcal (2) G-P(sol) polarization free energy of solvation -29.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds