Wall clock time and date at job start Tue Mar 31 2020 19:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46873 * 2 1 4 4 C 1.36935 * 119.99905 * 274.97985 * 3 2 1 5 5 H 1.07998 * 120.00208 * 142.99904 * 4 3 2 6 6 C 1.38810 * 120.00091 * 322.99670 * 4 3 2 7 7 N 1.31622 * 120.00276 * 155.10801 * 6 4 3 8 8 Si 1.86805 * 120.00130 * 335.10837 * 6 4 3 9 9 H 1.48501 * 109.46947 * 95.40061 * 8 6 4 10 10 H 1.48500 * 109.47067 * 215.40200 * 8 6 4 11 11 H 1.48501 * 109.46926 * 335.39995 * 8 6 4 12 12 C 1.46497 * 119.99937 * 94.98148 * 3 2 1 13 13 H 1.09007 * 109.46783 * 179.97438 * 12 3 2 14 14 C 1.53003 * 109.47439 * 60.00161 * 12 3 2 15 15 C 1.53001 * 109.47366 * 299.99419 * 12 3 2 16 16 N 1.46493 * 109.47292 * 305.00775 * 15 12 3 17 17 C 1.34778 * 120.00239 * 179.97438 * 16 15 12 18 18 O 1.21285 * 119.99353 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00357 * 179.97438 * 17 16 15 20 20 C 1.52997 * 109.47254 * 87.05741 * 19 17 16 21 21 O 1.42898 * 109.46707 * 327.05676 * 19 17 16 22 22 C 1.42898 * 114.00255 * 299.99962 * 21 19 17 23 23 C 1.50698 * 109.47013 * 207.06043 * 19 17 16 24 24 C 1.38232 * 120.00390 * 39.90899 * 23 19 17 25 25 C 1.38236 * 120.00023 * 179.81215 * 24 23 19 26 26 C 1.38230 * 119.99801 * 0.39766 * 25 24 23 27 27 C 1.38229 * 120.00470 * 359.85929 * 26 25 24 28 28 C 1.38238 * 119.99849 * 359.95200 * 27 26 25 29 29 H 1.09003 * 109.46898 * 299.99830 * 1 2 3 30 30 H 1.08995 * 109.47372 * 60.00210 * 1 2 3 31 31 H 1.08997 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47165 * 240.00254 * 2 1 3 33 33 H 1.08995 * 109.47372 * 119.99790 * 2 1 3 34 34 H 0.96999 * 120.00664 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.47060 * 59.99633 * 14 12 3 36 36 H 1.08997 * 109.47354 * 179.97438 * 14 12 3 37 37 H 1.08999 * 109.46583 * 299.99771 * 14 12 3 38 38 H 1.09007 * 109.46257 * 65.00703 * 15 12 3 39 39 H 1.08993 * 109.47165 * 184.99630 * 15 12 3 40 40 H 0.97003 * 120.00385 * 359.97438 * 16 15 12 41 41 H 1.09007 * 109.47099 * 59.99651 * 20 19 17 42 42 H 1.08993 * 109.47237 * 180.02562 * 20 19 17 43 43 H 1.09007 * 109.47233 * 300.00380 * 20 19 17 44 44 H 1.09003 * 109.47316 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.46942 * 300.00126 * 22 21 19 46 46 H 1.08998 * 109.47117 * 60.00311 * 22 21 19 47 47 H 1.08002 * 120.00056 * 0.02562 * 24 23 19 48 48 H 1.08002 * 119.99817 * 180.23576 * 25 24 23 49 49 H 1.08004 * 119.99608 * 179.83304 * 26 25 24 50 50 H 1.08002 * 120.00324 * 179.97438 * 27 26 25 51 51 H 1.07996 * 120.00064 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1494 2.0611 -1.1814 5 1 1.9186 3.1152 -1.2264 6 6 2.5790 1.3955 -2.3212 7 7 2.2573 1.8545 -3.5121 8 14 3.6139 -0.1519 -2.1650 9 1 2.7339 -1.3456 -2.2400 10 1 4.6056 -0.1977 -3.2695 11 1 4.3251 -0.1422 -0.8614 12 6 2.3662 2.0351 1.2639 13 1 2.7076 3.0512 1.0654 14 6 3.4822 1.2487 1.9548 15 6 1.1354 2.0784 2.1716 16 7 0.0290 2.7269 1.4636 17 6 -1.1644 2.8771 2.0717 18 8 -1.3224 2.4748 3.2049 19 6 -2.3025 3.5448 1.3435 20 6 -3.0662 2.5017 0.5252 21 8 -1.7844 4.5497 0.4697 22 6 -1.0498 5.5778 1.1370 23 6 -3.2344 4.1800 2.3430 24 6 -2.7219 4.8281 3.4512 25 6 -3.5767 5.4142 4.3659 26 6 -4.9442 5.3450 4.1767 27 6 -5.4570 4.6923 3.0713 28 6 -4.6021 4.1096 2.1545 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.5572 1.3892 -4.3086 35 1 4.3591 1.2180 1.3080 36 1 3.7414 1.7355 2.8949 37 1 3.1412 0.2326 2.1532 38 1 0.8478 1.0623 2.4423 39 1 1.3694 2.6423 3.0745 40 1 0.1552 3.0483 0.5571 41 1 -3.4613 1.7351 1.1919 42 1 -3.8890 2.9847 -0.0017 43 1 -2.3921 2.0422 -0.1977 44 1 -0.6907 6.3014 0.4051 45 1 -1.6979 6.0795 1.8556 46 1 -0.2007 5.1371 1.6594 47 1 -1.6535 4.8796 3.6006 48 1 -3.1761 5.9238 5.2298 49 1 -5.6122 5.8005 4.8928 50 1 -6.5255 4.6379 2.9237 51 1 -5.0026 3.5993 1.2911 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156466229.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:29 Heat of formation + Delta-G solvation = -37.584799 kcal Electronic energy + Delta-G solvation = -31285.598660 eV Core-core repulsion = 27378.774132 eV Total energy + Delta-G solvation = -3906.824528 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.01024 -39.90648 -38.80891 -38.31558 -35.48358 -33.98735 -33.87234 -32.80924 -31.91055 -30.54488 -30.38660 -27.64191 -27.31262 -25.71183 -25.30778 -24.07061 -23.35714 -22.51827 -21.07656 -20.64064 -18.93189 -18.74099 -18.38715 -17.58224 -17.30040 -16.72873 -16.51427 -16.34458 -15.93984 -15.55727 -15.44332 -15.18777 -14.86573 -14.69277 -14.57848 -14.44036 -14.16343 -13.99856 -13.78570 -13.64006 -13.45280 -13.39835 -13.25811 -12.96301 -12.84966 -12.79611 -12.74142 -12.60741 -12.54075 -12.15709 -12.05354 -11.88991 -11.79103 -11.42571 -11.32273 -11.29051 -10.52458 -10.42960 -9.96683 -9.80292 -9.74583 -8.76458 -8.14426 -5.48567 0.33147 0.49152 1.33584 1.44667 1.49949 1.54071 2.17032 2.47362 2.63070 2.95898 3.08001 3.34376 3.46081 3.64297 3.91698 3.99956 4.09918 4.14331 4.25638 4.27155 4.34801 4.38905 4.39960 4.50485 4.54439 4.58913 4.67381 4.68208 4.69194 4.71901 4.75364 4.77654 4.82861 4.87182 5.00729 5.06095 5.08218 5.12376 5.20089 5.26230 5.36422 5.49498 5.53016 5.56357 5.59242 5.60750 5.90265 5.99669 6.07533 6.24529 6.59335 7.03546 7.18453 7.69116 8.12307 9.04539 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019430 B = 0.003561 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.731874 B = 7861.242471 C = 8250.519320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.128 3.872 3 N -0.603 5.603 4 C -0.244 4.244 5 H 0.052 0.948 6 C -0.010 4.010 7 N -0.941 5.941 8 Si 0.929 3.071 9 H -0.284 1.284 10 H -0.318 1.318 11 H -0.257 1.257 12 C 0.156 3.844 13 H 0.072 0.928 14 C -0.155 4.155 15 C 0.114 3.886 16 N -0.696 5.696 17 C 0.495 3.505 18 O -0.567 6.567 19 C 0.143 3.857 20 C -0.138 4.138 21 O -0.372 6.372 22 C 0.014 3.986 23 C -0.116 4.116 24 C -0.102 4.102 25 C -0.133 4.133 26 C -0.114 4.114 27 C -0.126 4.126 28 C -0.110 4.110 29 H 0.056 0.944 30 H 0.034 0.966 31 H 0.054 0.946 32 H 0.026 0.974 33 H 0.064 0.936 34 H 0.259 0.741 35 H 0.045 0.955 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.411 0.589 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.062 0.938 44 H 0.104 0.896 45 H 0.057 0.943 46 H 0.040 0.960 47 H 0.103 0.897 48 H 0.139 0.861 49 H 0.151 0.849 50 H 0.152 0.848 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.935 5.387 14.983 19.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.004 3.996 3 N -0.326 5.326 4 C -0.374 4.374 5 H 0.069 0.931 6 C -0.207 4.207 7 N -0.585 5.585 8 Si 0.760 3.240 9 H -0.212 1.212 10 H -0.247 1.247 11 H -0.181 1.181 12 C 0.049 3.951 13 H 0.090 0.910 14 C -0.214 4.214 15 C -0.012 4.012 16 N -0.347 5.347 17 C 0.280 3.720 18 O -0.447 6.447 19 C 0.101 3.899 20 C -0.195 4.195 21 O -0.291 6.291 22 C -0.082 4.082 23 C -0.117 4.117 24 C -0.121 4.121 25 C -0.151 4.151 26 C -0.132 4.132 27 C -0.144 4.144 28 C -0.128 4.128 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.248 0.752 41 H 0.102 0.898 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.122 0.878 45 H 0.075 0.925 46 H 0.058 0.942 47 H 0.121 0.879 48 H 0.157 0.843 49 H 0.168 0.832 50 H 0.169 0.831 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.002 5.085 15.423 20.193 hybrid contribution 1.136 -0.685 -0.838 1.569 sum -10.866 4.400 14.585 18.712 Atomic orbital electron populations 1.22215 0.97801 1.00314 1.01118 1.21111 0.93598 0.86080 0.98836 1.44262 1.74735 1.11576 1.02073 1.18589 1.38230 0.94563 0.86022 0.93055 1.25900 0.99328 1.00518 0.94983 1.70013 1.46820 1.43507 0.98116 0.86099 0.79663 0.81277 0.76984 1.21236 1.24693 1.18062 1.20861 0.91876 0.97088 0.85254 0.91010 1.22137 0.98192 1.00611 1.00494 1.21880 0.86945 0.97298 0.95030 1.46078 1.10840 1.58579 1.19180 1.21250 0.84451 0.79892 0.86422 1.90662 1.83066 1.51840 1.19171 1.20561 0.90534 0.89048 0.89770 1.21857 1.00866 0.96775 0.99978 1.88079 1.71426 1.36363 1.33221 1.23135 0.94953 0.90721 0.99359 1.19885 0.94903 1.00772 0.96133 1.21060 0.99556 0.97214 0.94242 1.21377 0.94168 1.00222 0.99354 1.21554 0.95175 0.98381 0.98064 1.21493 1.00932 0.97685 0.94304 1.21372 0.91825 0.99259 1.00334 0.92508 0.94652 0.92728 0.95582 0.91814 0.93182 0.93606 0.90270 0.92697 0.92403 0.90978 0.75200 0.89810 0.88376 0.91868 0.87758 0.92466 0.94156 0.87853 0.84315 0.83175 0.83079 0.84126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.78 9.84 71.98 0.71 -5.07 16 2 C 0.13 5.14 4.71 86.38 0.41 5.55 16 3 N -0.60 -25.28 1.46 -678.04 -0.99 -26.27 16 4 C -0.24 -12.55 9.51 84.03 0.80 -11.75 16 5 H 0.05 2.89 8.06 -2.91 -0.02 2.87 16 6 C -0.01 -0.56 5.29 84.86 0.45 -0.11 16 7 N -0.94 -56.35 13.97 21.65 0.30 -56.05 16 8 Si 0.93 44.75 25.20 68.60 1.73 46.48 16 9 H -0.28 -13.42 6.64 99.48 0.66 -12.76 16 10 H -0.32 -15.87 7.11 99.48 0.71 -15.16 16 11 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 12 C 0.16 5.33 2.87 44.99 0.13 5.46 16 13 H 0.07 2.54 7.89 -2.38 -0.02 2.53 16 14 C -0.16 -4.60 9.18 71.98 0.66 -3.94 16 15 C 0.11 3.59 4.33 86.38 0.37 3.97 16 16 N -0.70 -23.20 3.01 -463.07 -1.39 -24.59 16 17 C 0.49 16.37 4.59 87.66 0.40 16.77 16 18 O -0.57 -21.20 15.15 -3.04 -0.05 -21.24 16 19 C 0.14 4.23 1.01 -12.29 -0.01 4.22 16 20 C -0.14 -3.68 7.80 71.98 0.56 -3.12 16 21 O -0.37 -11.49 9.63 -148.98 -1.44 -12.93 16 22 C 0.01 0.38 9.52 113.37 1.08 1.46 16 23 C -0.12 -3.13 4.31 -19.87 -0.09 -3.22 16 24 C -0.10 -2.70 6.31 22.27 0.14 -2.56 16 25 C -0.13 -2.81 10.05 22.27 0.22 -2.59 16 26 C -0.11 -2.00 10.05 22.27 0.22 -1.78 16 27 C -0.13 -2.28 10.05 22.27 0.22 -2.06 16 28 C -0.11 -2.46 9.12 22.27 0.20 -2.25 16 29 H 0.06 2.03 4.92 -2.39 -0.01 2.02 16 30 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.03 1.17 3.19 -2.39 -0.01 1.17 16 33 H 0.06 2.24 6.44 -2.39 -0.02 2.23 16 34 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 35 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.05 1.57 6.66 -2.39 -0.02 1.56 16 38 H 0.06 1.90 6.99 -2.38 -0.02 1.88 16 39 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.41 15.19 7.21 -92.71 -0.67 14.52 16 41 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 42 H 0.10 2.17 6.69 -2.39 -0.02 2.16 16 43 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.06 1.39 5.68 -2.39 -0.01 1.38 16 46 H 0.04 1.10 6.54 -2.39 -0.02 1.09 16 47 H 0.10 2.93 6.50 -2.91 -0.02 2.91 16 48 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 49 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 50 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 51 H 0.14 2.64 5.98 -2.91 -0.02 2.63 16 Total: -1.00 -65.56 388.20 4.87 -60.69 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: 0.22 Total: 34.94 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 6.49 Total: -1.03 kcal Atomic # 7 Polarization: -104.82 SS G_CDS: -2.08 Total: -106.91 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -1.48 Total: -34.17 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.73 Total: 46.48 kcal Total: -65.56 4.87 -60.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156466229.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.103 kcal (2) G-P(sol) polarization free energy of solvation -65.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds