Wall clock time and date at job start Tue Mar 31 2020 19:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47067 * 2 1 4 4 C 1.36934 * 120.00076 * 275.91195 * 3 2 1 5 5 H 1.08004 * 119.99668 * 34.07788 * 4 3 2 6 6 C 1.38811 * 120.00398 * 214.07374 * 4 3 2 7 7 N 1.31617 * 119.99519 * 17.04426 * 6 4 3 8 8 Si 1.86795 * 120.00395 * 197.04104 * 6 4 3 9 9 H 1.48501 * 109.47233 * 59.99795 * 8 6 4 10 10 H 1.48497 * 109.47334 * 180.02562 * 8 6 4 11 11 H 1.48509 * 109.47083 * 300.00277 * 8 6 4 12 12 C 1.46508 * 120.00017 * 95.91064 * 3 2 1 13 13 H 1.09002 * 109.46969 * 177.14571 * 12 3 2 14 14 C 1.53000 * 109.46622 * 57.15114 * 12 3 2 15 15 C 1.53000 * 109.47299 * 297.14943 * 12 3 2 16 16 N 1.46497 * 109.47086 * 305.00061 * 15 12 3 17 17 C 1.34775 * 119.99915 * 180.02562 * 16 15 12 18 18 O 1.21280 * 120.00139 * 359.97438 * 17 16 15 19 19 C 1.50707 * 120.00042 * 180.02562 * 17 16 15 20 20 C 1.52993 * 109.46950 * 179.97438 * 19 17 16 21 21 C 1.50706 * 109.46876 * 179.97438 * 20 19 17 22 22 C 1.38162 * 120.02600 * 264.99892 * 21 20 19 23 23 C 1.38251 * 120.05556 * 179.97438 * 22 21 20 24 24 C 1.38283 * 120.10965 * 0.02714 * 23 22 21 25 25 C 1.38128 * 120.05812 * 0.02562 * 24 23 22 26 26 C 1.38709 * 120.02892 * 84.72501 * 21 20 19 27 27 O 1.35902 * 120.05398 * 359.97438 * 26 21 20 28 28 C 1.42903 * 116.99951 * 180.02562 * 27 26 21 29 29 H 1.08994 * 109.47172 * 60.00449 * 1 2 3 30 30 H 1.09002 * 109.46783 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47070 * 299.99850 * 1 2 3 32 32 H 1.08998 * 109.47522 * 239.99545 * 2 1 3 33 33 H 1.09008 * 109.47311 * 119.99581 * 2 1 3 34 34 H 0.97005 * 120.00024 * 180.02562 * 7 6 4 35 35 H 1.08992 * 109.47541 * 60.00200 * 14 12 3 36 36 H 1.09007 * 109.46609 * 179.97438 * 14 12 3 37 37 H 1.08994 * 109.47633 * 299.99495 * 14 12 3 38 38 H 1.09001 * 109.46587 * 64.99923 * 15 12 3 39 39 H 1.08994 * 109.47331 * 184.99772 * 15 12 3 40 40 H 0.97003 * 120.00082 * 359.97438 * 16 15 12 41 41 H 1.09004 * 109.46664 * 299.99902 * 19 17 16 42 42 H 1.08994 * 109.47478 * 59.99359 * 19 17 16 43 43 H 1.08995 * 109.47540 * 299.99825 * 20 19 17 44 44 H 1.09001 * 109.47173 * 59.99767 * 20 19 17 45 45 H 1.08007 * 119.97830 * 359.97438 * 22 21 20 46 46 H 1.08000 * 119.94441 * 180.02562 * 23 22 21 47 47 H 1.07998 * 119.97629 * 179.97438 * 24 23 22 48 48 H 1.07996 * 120.02999 * 179.97438 * 25 24 23 49 49 H 1.09000 * 109.46971 * 299.99917 * 28 27 26 50 50 H 1.09000 * 109.46981 * 60.00008 * 28 27 26 51 51 H 1.08995 * 109.46577 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1314 2.0675 -1.1796 5 1 1.4232 1.8926 -1.9760 6 6 3.1560 2.9880 -1.3517 7 7 4.1988 2.9695 -0.5488 8 14 3.0551 4.2527 -2.7226 9 1 1.8458 5.0934 -2.5325 10 1 4.2657 5.1121 -2.6934 11 1 2.9736 3.5574 -4.0324 12 6 2.3857 2.0283 1.2621 13 1 2.7712 3.0275 1.0593 14 6 3.4621 1.1994 1.9656 15 6 1.1518 2.1304 2.1610 16 7 0.0790 2.8210 1.4410 17 6 -1.1105 3.0272 2.0402 18 8 -1.2930 2.6407 3.1752 19 6 -2.2144 3.7372 1.2994 20 6 -3.4482 3.8393 2.1984 21 6 -4.5518 4.5498 1.4578 22 6 -4.7287 5.9104 1.6199 23 6 -5.7406 6.5629 0.9404 24 6 -6.5784 5.8558 0.0976 25 6 -6.4064 4.4952 -0.0670 26 6 -5.3873 3.8393 0.6086 27 8 -5.2114 2.5019 0.4429 28 6 -6.1085 1.8350 -0.4475 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 4.9147 3.6130 -0.6687 35 1 4.3411 1.1267 1.3253 36 1 3.7358 1.6811 2.9044 37 1 3.0767 0.2003 2.1684 38 1 0.8190 1.1296 2.4362 39 1 1.4037 2.6901 3.0617 40 1 0.2249 3.1305 0.5334 41 1 -1.8816 4.7378 1.0234 42 1 -2.4666 3.1770 0.3992 43 1 -3.7808 2.8387 2.4741 44 1 -3.1962 4.3994 3.0989 45 1 -4.0760 6.4649 2.2779 46 1 -5.8770 7.6266 1.0681 47 1 -7.3684 6.3676 -0.4318 48 1 -7.0612 3.9433 -0.7250 49 1 -7.1310 1.9538 -0.0893 50 1 -6.0199 2.2678 -1.4440 51 1 -5.8588 0.7748 -0.4879 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156760861.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:32 Heat of formation + Delta-G solvation = -56.781715 kcal Electronic energy + Delta-G solvation = -29732.575135 eV Core-core repulsion = 25824.918167 eV Total energy + Delta-G solvation = -3907.656968 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.26610 -40.57668 -38.62272 -38.29046 -35.22837 -34.94894 -33.72289 -32.70121 -31.14123 -30.68803 -29.90899 -28.16281 -27.26338 -25.77936 -25.06223 -23.29718 -23.01378 -22.09869 -21.10868 -20.83144 -18.89701 -18.75325 -17.91338 -17.29959 -17.11204 -16.67386 -16.51014 -16.40412 -16.31817 -15.93703 -15.38196 -15.26137 -14.79423 -14.63802 -14.30344 -14.21739 -14.02378 -13.87822 -13.68675 -13.50635 -13.44646 -13.13324 -12.85926 -12.78958 -12.77043 -12.74629 -12.51126 -12.47293 -12.34634 -12.07884 -12.00124 -11.84393 -11.83472 -11.64682 -11.35033 -11.16104 -10.78899 -10.41000 -9.84398 -9.77028 -9.06015 -8.50027 -7.80367 -5.31811 0.38553 0.52539 1.51698 1.54542 1.59228 1.77233 2.43308 2.46005 2.56285 2.85787 3.33695 3.66077 3.75723 3.89338 4.01144 4.13352 4.22210 4.26889 4.31902 4.37534 4.40055 4.47179 4.52445 4.54520 4.60667 4.66048 4.71211 4.74106 4.77738 4.81357 4.90285 4.93147 4.93951 5.00617 5.06726 5.08109 5.22770 5.25630 5.33312 5.44230 5.55542 5.56067 5.62849 5.64545 5.72427 5.78316 5.86586 5.92012 6.50594 6.52110 6.78065 7.25605 7.39491 7.94217 8.47415 9.23035 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011885 B = 0.003155 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.425419 B = 8871.734562 C = 9456.384588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.139 3.861 3 N -0.590 5.590 4 C -0.263 4.263 5 H 0.060 0.940 6 C -0.029 4.029 7 N -0.915 5.915 8 Si 0.951 3.049 9 H -0.275 1.275 10 H -0.300 1.300 11 H -0.283 1.283 12 C 0.180 3.820 13 H 0.073 0.927 14 C -0.135 4.135 15 C 0.115 3.885 16 N -0.702 5.702 17 C 0.507 3.493 18 O -0.592 6.592 19 C -0.122 4.122 20 C -0.042 4.042 21 C -0.132 4.132 22 C -0.086 4.086 23 C -0.160 4.160 24 C -0.087 4.087 25 C -0.213 4.213 26 C 0.113 3.887 27 O -0.336 6.336 28 C 0.020 3.980 29 H 0.040 0.960 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.031 0.969 33 H 0.044 0.956 34 H 0.249 0.751 35 H 0.046 0.954 36 H 0.050 0.950 37 H 0.043 0.957 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.409 0.591 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.140 0.860 46 H 0.146 0.854 47 H 0.149 0.851 48 H 0.145 0.855 49 H 0.067 0.933 50 H 0.064 0.936 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.592 3.924 0.822 20.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.013 3.987 3 N -0.312 5.312 4 C -0.393 4.393 5 H 0.077 0.923 6 C -0.227 4.227 7 N -0.558 5.558 8 Si 0.780 3.220 9 H -0.201 1.201 10 H -0.227 1.227 11 H -0.209 1.209 12 C 0.073 3.927 13 H 0.091 0.909 14 C -0.195 4.195 15 C -0.011 4.011 16 N -0.351 5.351 17 C 0.295 3.705 18 O -0.475 6.475 19 C -0.161 4.161 20 C -0.080 4.080 21 C -0.132 4.132 22 C -0.104 4.104 23 C -0.178 4.178 24 C -0.105 4.105 25 C -0.232 4.232 26 C 0.067 3.933 27 O -0.250 6.250 28 C -0.075 4.075 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.246 0.754 41 H 0.123 0.877 42 H 0.112 0.888 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.158 0.842 46 H 0.164 0.836 47 H 0.167 0.833 48 H 0.163 0.837 49 H 0.086 0.914 50 H 0.083 0.917 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -20.397 3.587 1.677 20.777 hybrid contribution 0.428 0.538 -1.271 1.445 sum -19.968 4.125 0.406 20.394 Atomic orbital electron populations 1.22219 0.98131 1.00154 1.00703 1.20839 0.92966 0.86322 0.98562 1.43971 1.76077 1.09102 1.02049 1.19197 1.07178 1.18714 0.94229 0.92259 1.25707 0.94379 1.02923 0.99669 1.70129 1.07725 1.36791 1.41203 0.85612 0.76621 0.79679 0.80044 1.20063 1.22660 1.20924 1.20378 0.89999 0.97963 0.84388 0.90940 1.21872 0.99567 0.98920 0.99102 1.21873 0.88823 0.95573 0.94821 1.45984 1.12487 1.57866 1.18787 1.21110 0.83786 0.79125 0.86486 1.90617 1.82483 1.53986 1.20368 1.21553 0.92911 1.02068 0.99603 1.19944 0.91037 1.00334 0.96677 1.19347 0.98793 0.94349 1.00746 1.21174 0.98015 0.92285 0.98961 1.21371 0.96404 1.01282 0.98732 1.21301 0.99002 0.93160 0.97048 1.21497 1.00395 0.96737 1.04562 1.19132 0.95155 0.83205 0.95781 1.86102 1.56504 1.18531 1.63822 1.23289 0.93383 0.98156 0.92651 0.94117 0.92647 0.93850 0.95092 0.93788 0.94216 0.93530 0.93063 0.93762 0.93395 0.93150 0.75448 0.87714 0.88781 0.92145 0.90869 0.84246 0.83649 0.83289 0.83691 0.91437 0.91723 0.87295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.41 9.95 71.98 0.72 -4.70 16 2 C 0.14 5.56 5.75 86.38 0.50 6.06 16 3 N -0.59 -26.59 1.88 -678.01 -1.28 -27.86 16 4 C -0.26 -13.02 9.07 84.03 0.76 -12.26 16 5 H 0.06 2.94 7.89 -2.91 -0.02 2.91 16 6 C -0.03 -1.48 4.86 84.86 0.41 -1.07 16 7 N -0.91 -49.30 10.90 21.65 0.24 -49.06 16 8 Si 0.95 41.73 29.59 68.60 2.03 43.76 16 9 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 10 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 C 0.18 7.79 1.95 44.99 0.09 7.88 16 13 H 0.07 3.61 5.94 -2.39 -0.01 3.60 16 14 C -0.14 -5.54 9.05 71.98 0.65 -4.89 16 15 C 0.12 4.51 4.36 86.38 0.38 4.89 16 16 N -0.70 -25.97 4.28 -463.07 -1.98 -27.95 16 17 C 0.51 18.10 7.78 87.66 0.68 18.78 16 18 O -0.59 -24.72 15.98 -3.03 -0.05 -24.77 16 19 C -0.12 -3.47 5.68 29.85 0.17 -3.30 16 20 C -0.04 -1.16 4.35 29.85 0.13 -1.03 16 21 C -0.13 -3.19 5.15 -19.77 -0.10 -3.29 16 22 C -0.09 -1.74 9.68 22.25 0.22 -1.52 16 23 C -0.16 -2.66 10.04 22.28 0.22 -2.43 16 24 C -0.09 -1.38 10.04 22.25 0.22 -1.15 16 25 C -0.21 -3.90 9.04 22.37 0.20 -3.70 16 26 C 0.11 2.64 6.66 22.51 0.15 2.79 16 27 O -0.34 -8.12 9.64 -92.45 -0.89 -9.01 16 28 C 0.02 0.30 9.81 113.37 1.11 1.41 16 29 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.04 1.61 5.32 -2.39 -0.01 1.59 16 32 H 0.03 1.29 8.09 -2.39 -0.02 1.27 16 33 H 0.04 1.69 6.29 -2.38 -0.01 1.68 16 34 H 0.25 13.28 8.31 -92.70 -0.77 12.51 16 35 H 0.05 2.17 7.69 -2.39 -0.02 2.15 16 36 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.04 1.66 6.56 -2.39 -0.02 1.65 16 38 H 0.05 1.92 6.98 -2.39 -0.02 1.90 16 39 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.41 15.57 7.74 -92.71 -0.72 14.85 16 41 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 43 H 0.06 1.90 7.66 -2.39 -0.02 1.88 16 44 H 0.07 2.01 8.01 -2.39 -0.02 1.99 16 45 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 46 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 47 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 48 H 0.15 1.95 6.30 -2.91 -0.02 1.94 16 49 H 0.07 0.80 7.65 -2.39 -0.02 0.78 16 50 H 0.06 0.83 7.68 -2.39 -0.02 0.81 16 51 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -62.01 406.08 4.78 -57.23 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: 0.20 Total: 35.21 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 6.51 Total: 2.46 kcal Atomic # 7 Polarization: -101.85 SS G_CDS: -3.02 Total: -104.88 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -0.94 Total: -33.78 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -62.01 4.78 -57.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156760861.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.447 kcal (2) G-P(sol) polarization free energy of solvation -62.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds