Wall clock time and date at job start Tue Mar 31 2020 19:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47318 * 2 1 4 4 C 1.36936 * 119.99988 * 266.83658 * 3 2 1 5 5 H 1.08005 * 119.99875 * 186.74896 * 4 3 2 6 6 C 1.38805 * 120.00173 * 6.74704 * 4 3 2 7 7 N 1.31619 * 119.99973 * 27.48356 * 6 4 3 8 8 Si 1.86805 * 120.00104 * 207.48084 * 6 4 3 9 9 H 1.48495 * 109.47043 * 94.98705 * 8 6 4 10 10 H 1.48498 * 109.46945 * 214.98377 * 8 6 4 11 11 H 1.48499 * 109.46891 * 334.98691 * 8 6 4 12 12 C 1.46505 * 119.99732 * 86.83885 * 3 2 1 13 13 H 1.09004 * 109.46947 * 180.02562 * 12 3 2 14 14 C 1.53001 * 109.47169 * 60.00221 * 12 3 2 15 15 C 1.52995 * 109.47006 * 299.99913 * 12 3 2 16 16 N 1.46500 * 109.47104 * 305.00264 * 15 12 3 17 17 C 1.34784 * 120.00038 * 180.02562 * 16 15 12 18 18 O 1.21275 * 119.99786 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00056 * 179.97438 * 17 16 15 20 20 H 1.08994 * 109.47099 * 59.99923 * 19 17 16 21 21 C 1.53001 * 109.47186 * 300.00311 * 19 17 16 22 22 O 1.42896 * 109.47140 * 180.02562 * 19 17 16 23 23 C 1.35898 * 117.00127 * 204.88738 * 22 19 17 24 24 C 1.38740 * 120.05411 * 354.76834 * 23 22 19 25 25 C 1.38139 * 119.94342 * 179.97438 * 24 23 22 26 26 C 1.38266 * 120.05724 * 0.27777 * 25 24 23 27 27 C 1.50700 * 119.94322 * 179.72418 * 26 25 24 28 28 C 1.38266 * 120.11124 * 359.44838 * 26 25 24 29 29 C 1.38146 * 120.05353 * 0.55054 * 28 26 25 30 30 H 1.08999 * 109.47166 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47298 * 300.00390 * 1 2 3 32 32 H 1.09004 * 109.46753 * 60.00335 * 1 2 3 33 33 H 1.09004 * 109.47691 * 239.99814 * 2 1 3 34 34 H 1.08999 * 109.47210 * 120.00449 * 2 1 3 35 35 H 0.97005 * 120.00234 * 180.02562 * 7 6 4 36 36 H 1.08998 * 109.47260 * 59.99823 * 14 12 3 37 37 H 1.08998 * 109.46717 * 180.02562 * 14 12 3 38 38 H 1.08996 * 109.46882 * 299.99516 * 14 12 3 39 39 H 1.09000 * 109.47207 * 185.00608 * 15 12 3 40 40 H 1.08997 * 109.47151 * 65.00093 * 15 12 3 41 41 H 0.97001 * 120.00671 * 0.02562 * 16 15 12 42 42 H 1.09000 * 109.47250 * 179.97438 * 21 19 17 43 43 H 1.09008 * 109.46951 * 299.99811 * 21 19 17 44 44 H 1.08997 * 109.47321 * 59.99455 * 21 19 17 45 45 H 1.08004 * 120.02800 * 359.96369 * 24 23 22 46 46 H 1.08001 * 119.96917 * 180.02562 * 25 24 23 47 47 H 1.08999 * 109.47391 * 90.00102 * 27 26 25 48 48 H 1.09002 * 109.46830 * 210.00124 * 27 26 25 49 49 H 1.08991 * 109.47409 * 329.99846 * 27 26 25 50 50 H 1.07995 * 119.97394 * 180.25441 * 28 26 25 51 51 H 1.08000 * 120.02836 * 179.70360 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3083 2.0049 -1.1841 5 1 2.7701 2.9812 -1.1812 6 6 2.0087 1.3824 -2.3880 7 7 1.0179 0.5184 -2.4535 8 14 3.0117 1.7707 -3.9153 9 1 4.0904 0.7618 -4.0689 10 1 2.1290 1.7371 -5.1090 11 1 3.6131 3.1220 -3.7822 12 6 2.1966 2.0951 1.2669 13 1 2.5637 3.1020 1.0680 14 6 3.2076 1.3455 2.1368 15 6 0.8556 2.1771 1.9990 16 7 -0.1442 2.7882 1.1197 17 6 -1.4075 2.9640 1.5555 18 8 -1.7163 2.6168 2.6757 19 6 -2.4358 3.5931 0.6513 20 1 -2.5493 2.9865 -0.2472 21 6 -1.9798 5.0007 0.2619 22 8 -3.6880 3.6707 1.3354 23 6 -4.8090 3.7087 0.5681 24 6 -4.7033 3.7816 -0.8133 25 6 -5.8443 3.8196 -1.5911 26 6 -7.0909 3.7908 -0.9937 27 6 -8.3340 3.8386 -1.8443 28 6 -7.1990 3.7125 0.3826 29 6 -6.0610 3.6743 1.1648 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.8088 0.0831 -3.2947 36 1 4.1629 1.2871 1.6152 37 1 3.3398 1.8765 3.0795 38 1 2.8400 0.3389 2.3357 39 1 0.9687 2.7839 2.8974 40 1 0.5311 1.1742 2.2763 41 1 0.1028 3.0663 0.2238 42 1 -2.7234 5.4556 -0.3925 43 1 -1.8663 5.6074 1.1605 44 1 -1.0246 4.9419 -0.2597 45 1 -3.7298 3.8088 -1.2802 46 1 -5.7625 3.8759 -2.6665 47 1 -8.6360 2.8240 -2.1037 48 1 -9.1356 4.3257 -1.2890 49 1 -8.1294 4.4009 -2.7553 50 1 -8.1738 3.6860 0.8466 51 1 -6.1458 3.6179 2.2400 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156767074.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:23 Heat of formation + Delta-G solvation = -21.455305 kcal Electronic energy + Delta-G solvation = -30019.423500 eV Core-core repulsion = 26113.298399 eV Total energy + Delta-G solvation = -3906.125100 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.50981 -39.21206 -37.68231 -36.85239 -33.93041 -32.77501 -32.07762 -31.35410 -30.69672 -30.18379 -28.50220 -26.55922 -26.00981 -24.08291 -23.73541 -22.84124 -21.80210 -21.24768 -19.74933 -19.17624 -18.28201 -17.13143 -16.99723 -15.75954 -15.62616 -15.44571 -15.34034 -15.04440 -14.51516 -14.35091 -13.96688 -13.80978 -13.63002 -13.54231 -13.11952 -12.99967 -12.68866 -12.52730 -12.48300 -12.37598 -12.16456 -12.01564 -11.92259 -11.61324 -11.56034 -11.47774 -11.15982 -10.86787 -10.80621 -10.79074 -10.72134 -10.66610 -10.32265 -9.91227 -9.60184 -9.36710 -9.28584 -9.03655 -8.48548 -8.42275 -8.03948 -7.02402 -5.87099 -3.17089 1.29943 1.38178 2.86061 2.98640 3.32278 3.41260 3.43219 3.71145 3.93420 4.40193 4.72353 4.77385 4.82189 4.94812 4.95618 5.10983 5.17529 5.19422 5.29630 5.32967 5.40176 5.47149 5.52712 5.62385 5.63863 5.68058 5.81503 5.87974 5.99479 6.03469 6.05318 6.10277 6.25933 6.26887 6.30529 6.35057 6.54886 6.59968 6.67028 6.74204 6.81801 6.94246 6.99653 7.11313 7.16455 7.42781 7.57680 7.72475 8.05270 8.09392 8.24979 8.66410 9.14670 9.77235 10.22821 11.14474 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012084 B = 0.003327 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.559273 B = 8413.527464 C = 9846.328974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.170 3.830 3 N -0.591 5.591 4 C -0.260 4.260 5 H 0.074 0.926 6 C 0.005 3.995 7 N -0.886 5.886 8 Si 0.889 3.111 9 H -0.290 1.290 10 H -0.295 1.295 11 H -0.282 1.282 12 C 0.160 3.840 13 H 0.068 0.932 14 C -0.158 4.158 15 C 0.105 3.895 16 N -0.694 5.694 17 C 0.517 3.483 18 O -0.539 6.539 19 C 0.066 3.934 20 H 0.101 0.899 21 C -0.174 4.174 22 O -0.286 6.286 23 C 0.131 3.869 24 C -0.206 4.206 25 C -0.078 4.078 26 C -0.132 4.132 27 C -0.107 4.107 28 C -0.082 4.082 29 C -0.149 4.149 30 H 0.013 0.987 31 H 0.023 0.977 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.006 0.994 35 H 0.252 0.748 36 H 0.058 0.942 37 H 0.045 0.955 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.413 0.587 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.133 0.867 46 H 0.124 0.876 47 H 0.066 0.934 48 H 0.062 0.938 49 H 0.063 0.937 50 H 0.126 0.874 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.074 7.130 2.985 13.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.045 3.955 3 N -0.313 5.313 4 C -0.388 4.388 5 H 0.092 0.908 6 C -0.193 4.193 7 N -0.531 5.531 8 Si 0.719 3.281 9 H -0.218 1.218 10 H -0.222 1.222 11 H -0.207 1.207 12 C 0.051 3.949 13 H 0.086 0.914 14 C -0.217 4.217 15 C -0.020 4.020 16 N -0.346 5.346 17 C 0.300 3.700 18 O -0.416 6.416 19 C 0.007 3.993 20 H 0.119 0.881 21 C -0.232 4.232 22 O -0.198 6.198 23 C 0.085 3.915 24 C -0.224 4.224 25 C -0.097 4.097 26 C -0.133 4.133 27 C -0.164 4.164 28 C -0.101 4.101 29 C -0.168 4.168 30 H 0.032 0.968 31 H 0.042 0.958 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.024 0.976 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.251 0.749 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.151 0.849 46 H 0.142 0.858 47 H 0.085 0.915 48 H 0.081 0.919 49 H 0.082 0.918 50 H 0.144 0.856 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.300 6.797 3.840 13.735 hybrid contribution 0.713 0.104 -1.566 1.724 sum -10.587 6.902 2.274 12.841 Atomic orbital electron populations 1.22590 0.99097 0.98239 1.01872 1.20657 0.92547 0.84423 0.97849 1.44237 1.76309 1.10561 1.00232 1.19270 1.33842 1.02417 0.83286 0.90840 1.24662 0.97703 0.99782 0.97179 1.70192 1.25639 1.32139 1.25133 0.86484 0.80614 0.77812 0.83203 1.21751 1.22174 1.20704 1.20590 0.91216 0.96042 0.87074 0.91355 1.22159 1.00105 1.00713 0.98768 1.22077 0.89858 0.97755 0.92339 1.45744 1.08406 1.61233 1.19231 1.19865 0.83146 0.79475 0.87483 1.90680 1.79859 1.50869 1.20227 1.22229 0.82836 0.98538 0.95736 0.88092 1.22325 1.03003 0.94906 1.02932 1.86184 1.11836 1.87641 1.34163 1.19098 0.86919 0.95658 0.89805 1.21387 1.00134 1.08125 0.92804 1.20833 0.91346 0.97896 0.99583 1.19806 0.95123 1.04229 0.94105 1.20696 0.94787 1.02031 0.98890 1.20801 0.97679 0.98666 0.92905 1.20428 0.89458 1.06196 1.00675 0.96815 0.95800 0.88840 0.90346 0.97585 0.93767 0.92280 0.93565 0.92919 0.92820 0.91674 0.74941 0.90945 0.90983 0.89777 0.84940 0.85824 0.91540 0.91860 0.91814 0.85592 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 8.99 37.16 0.33 -3.20 16 2 C 0.17 3.81 5.17 -4.04 -0.02 3.79 16 3 N -0.59 -12.72 1.95 -165.66 -0.32 -13.04 16 4 C -0.26 -6.15 9.41 -15.06 -0.14 -6.29 16 5 H 0.07 1.72 7.80 -52.48 -0.41 1.31 16 6 C 0.00 0.12 4.85 -17.43 -0.08 0.04 16 7 N -0.89 -22.60 8.49 55.49 0.47 -22.13 16 8 Si 0.89 20.00 29.63 -169.99 -5.04 14.96 16 9 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 C 0.16 2.87 2.88 -67.93 -0.20 2.67 16 13 H 0.07 1.20 7.78 -51.93 -0.40 0.80 16 14 C -0.16 -2.52 9.17 37.16 0.34 -2.18 16 15 C 0.11 1.87 4.28 -4.04 -0.02 1.85 16 16 N -0.69 -12.26 3.90 -60.30 -0.24 -12.50 16 17 C 0.52 9.50 6.97 -10.98 -0.08 9.42 16 18 O -0.54 -11.77 16.50 -14.35 -0.24 -12.01 16 19 C 0.07 1.03 2.65 -27.88 -0.07 0.96 16 20 H 0.10 1.54 6.31 -51.93 -0.33 1.21 16 21 C -0.17 -2.19 9.07 37.16 0.34 -1.85 16 22 O -0.29 -4.77 9.33 -39.33 -0.37 -5.14 16 23 C 0.13 1.92 6.60 -39.21 -0.26 1.66 16 24 C -0.21 -2.72 8.24 -39.43 -0.33 -3.04 16 25 C -0.08 -0.91 9.69 -39.61 -0.38 -1.30 16 26 C -0.13 -1.43 5.88 -104.60 -0.62 -2.05 16 27 C -0.11 -0.85 10.01 36.01 0.36 -0.49 16 28 C -0.08 -0.91 9.69 -39.60 -0.38 -1.29 16 29 C -0.15 -1.95 9.99 -39.43 -0.39 -2.34 16 30 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.02 0.51 4.29 -51.93 -0.22 0.29 16 32 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 33 H 0.08 1.99 6.02 -51.93 -0.31 1.68 16 34 H 0.01 0.13 6.44 -51.93 -0.33 -0.21 16 35 H 0.25 6.42 8.31 -40.82 -0.34 6.08 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.86 6.68 -51.93 -0.35 0.51 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.27 6.38 -51.93 -0.33 0.94 16 41 H 0.41 7.43 7.31 -40.82 -0.30 7.13 16 42 H 0.07 0.81 6.92 -51.93 -0.36 0.45 16 43 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 44 H 0.08 0.99 7.56 -51.93 -0.39 0.60 16 45 H 0.13 1.65 5.43 -52.48 -0.29 1.37 16 46 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 49 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 50 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 51 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 397.15 15.07 5.98 5.98 Total: -1.00 -28.29 397.15 -9.46 -37.75 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -8.12 Total: 9.75 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -1.60 Total: -3.63 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: -0.09 Total: -47.67 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.60 Total: -17.15 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.04 Total: 14.96 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -28.29 -9.46 -37.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156767074.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.298 kcal (2) G-P(sol) polarization free energy of solvation -28.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds