Wall clock time and date at job start Tue Mar 31 2020 19:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47318 * 2 1 4 4 C 1.36936 * 119.99988 * 266.83658 * 3 2 1 5 5 H 1.08005 * 119.99875 * 186.74896 * 4 3 2 6 6 C 1.38805 * 120.00173 * 6.74704 * 4 3 2 7 7 N 1.31619 * 119.99973 * 27.48356 * 6 4 3 8 8 Si 1.86805 * 120.00104 * 207.48084 * 6 4 3 9 9 H 1.48495 * 109.47043 * 94.98705 * 8 6 4 10 10 H 1.48498 * 109.46945 * 214.98377 * 8 6 4 11 11 H 1.48499 * 109.46891 * 334.98691 * 8 6 4 12 12 C 1.46505 * 119.99732 * 86.83885 * 3 2 1 13 13 H 1.09004 * 109.46947 * 180.02562 * 12 3 2 14 14 C 1.53001 * 109.47169 * 60.00221 * 12 3 2 15 15 C 1.52995 * 109.47006 * 299.99913 * 12 3 2 16 16 N 1.46500 * 109.47104 * 305.00264 * 15 12 3 17 17 C 1.34784 * 120.00038 * 180.02562 * 16 15 12 18 18 O 1.21275 * 119.99786 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00056 * 179.97438 * 17 16 15 20 20 H 1.08994 * 109.47099 * 59.99923 * 19 17 16 21 21 C 1.53001 * 109.47186 * 300.00311 * 19 17 16 22 22 O 1.42896 * 109.47140 * 180.02562 * 19 17 16 23 23 C 1.35898 * 117.00127 * 204.88738 * 22 19 17 24 24 C 1.38740 * 120.05411 * 354.76834 * 23 22 19 25 25 C 1.38139 * 119.94342 * 179.97438 * 24 23 22 26 26 C 1.38266 * 120.05724 * 0.27777 * 25 24 23 27 27 C 1.50700 * 119.94322 * 179.72418 * 26 25 24 28 28 C 1.38266 * 120.11124 * 359.44838 * 26 25 24 29 29 C 1.38146 * 120.05353 * 0.55054 * 28 26 25 30 30 H 1.08999 * 109.47166 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47298 * 300.00390 * 1 2 3 32 32 H 1.09004 * 109.46753 * 60.00335 * 1 2 3 33 33 H 1.09004 * 109.47691 * 239.99814 * 2 1 3 34 34 H 1.08999 * 109.47210 * 120.00449 * 2 1 3 35 35 H 0.97005 * 120.00234 * 180.02562 * 7 6 4 36 36 H 1.08998 * 109.47260 * 59.99823 * 14 12 3 37 37 H 1.08998 * 109.46717 * 180.02562 * 14 12 3 38 38 H 1.08996 * 109.46882 * 299.99516 * 14 12 3 39 39 H 1.09000 * 109.47207 * 185.00608 * 15 12 3 40 40 H 1.08997 * 109.47151 * 65.00093 * 15 12 3 41 41 H 0.97001 * 120.00671 * 0.02562 * 16 15 12 42 42 H 1.09000 * 109.47250 * 179.97438 * 21 19 17 43 43 H 1.09008 * 109.46951 * 299.99811 * 21 19 17 44 44 H 1.08997 * 109.47321 * 59.99455 * 21 19 17 45 45 H 1.08004 * 120.02800 * 359.96369 * 24 23 22 46 46 H 1.08001 * 119.96917 * 180.02562 * 25 24 23 47 47 H 1.08999 * 109.47391 * 90.00102 * 27 26 25 48 48 H 1.09002 * 109.46830 * 210.00124 * 27 26 25 49 49 H 1.08991 * 109.47409 * 329.99846 * 27 26 25 50 50 H 1.07995 * 119.97394 * 180.25441 * 28 26 25 51 51 H 1.08000 * 120.02836 * 179.70360 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3083 2.0049 -1.1841 5 1 2.7701 2.9812 -1.1812 6 6 2.0087 1.3824 -2.3880 7 7 1.0179 0.5184 -2.4535 8 14 3.0117 1.7707 -3.9153 9 1 4.0904 0.7618 -4.0689 10 1 2.1290 1.7371 -5.1090 11 1 3.6131 3.1220 -3.7822 12 6 2.1966 2.0951 1.2669 13 1 2.5637 3.1020 1.0680 14 6 3.2076 1.3455 2.1368 15 6 0.8556 2.1771 1.9990 16 7 -0.1442 2.7882 1.1197 17 6 -1.4075 2.9640 1.5555 18 8 -1.7163 2.6168 2.6757 19 6 -2.4358 3.5931 0.6513 20 1 -2.5493 2.9865 -0.2472 21 6 -1.9798 5.0007 0.2619 22 8 -3.6880 3.6707 1.3354 23 6 -4.8090 3.7087 0.5681 24 6 -4.7033 3.7816 -0.8133 25 6 -5.8443 3.8196 -1.5911 26 6 -7.0909 3.7908 -0.9937 27 6 -8.3340 3.8386 -1.8443 28 6 -7.1990 3.7125 0.3826 29 6 -6.0610 3.6743 1.1648 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.8088 0.0831 -3.2947 36 1 4.1629 1.2871 1.6152 37 1 3.3398 1.8765 3.0795 38 1 2.8400 0.3389 2.3357 39 1 0.9687 2.7839 2.8974 40 1 0.5311 1.1742 2.2763 41 1 0.1028 3.0663 0.2238 42 1 -2.7234 5.4556 -0.3925 43 1 -1.8663 5.6074 1.1605 44 1 -1.0246 4.9419 -0.2597 45 1 -3.7298 3.8088 -1.2802 46 1 -5.7625 3.8759 -2.6665 47 1 -8.6360 2.8240 -2.1037 48 1 -9.1356 4.3257 -1.2890 49 1 -8.1294 4.4009 -2.7553 50 1 -8.1738 3.6860 0.8466 51 1 -6.1458 3.6179 2.2400 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156767074.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:22 Heat of formation + Delta-G solvation = -34.129871 kcal Electronic energy + Delta-G solvation = -30019.973110 eV Core-core repulsion = 26113.298399 eV Total energy + Delta-G solvation = -3906.674711 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.68090 -40.51374 -38.93050 -38.31043 -35.54656 -34.14931 -33.25875 -32.38805 -31.97540 -31.65794 -30.23179 -27.49438 -27.25387 -25.61874 -25.15847 -23.86995 -23.46104 -22.25427 -21.14755 -20.72453 -19.38678 -18.81571 -18.38377 -17.20779 -17.09949 -16.71199 -16.46911 -16.20393 -15.98272 -15.56667 -15.30161 -15.16169 -14.69904 -14.55068 -14.40878 -14.23819 -14.09960 -14.06393 -13.81741 -13.56742 -13.42447 -13.24523 -13.15812 -12.86857 -12.76268 -12.62763 -12.53353 -12.48692 -12.40732 -12.37496 -12.05693 -11.87663 -11.71117 -11.63586 -11.28935 -11.10859 -10.82122 -10.30288 -9.97355 -9.96801 -9.01935 -8.82568 -7.74532 -5.03550 0.36945 0.42774 1.51598 1.53140 1.59379 1.62457 1.64933 2.57682 2.66819 2.77651 3.34176 3.54777 3.64963 3.74696 3.85661 3.89601 3.96468 4.07691 4.09318 4.33202 4.40411 4.44560 4.51308 4.60124 4.63413 4.68068 4.71657 4.78739 4.83271 4.83554 4.90480 5.00252 5.04355 5.09226 5.13037 5.18196 5.25945 5.31871 5.34227 5.37186 5.39921 5.42486 5.59609 5.67933 5.70741 5.84436 5.85668 6.20848 6.35286 6.39660 6.60142 7.20021 7.27733 7.98126 8.40618 9.25650 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012084 B = 0.003327 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.559273 B = 8413.527464 C = 9846.328974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.177 3.823 3 N -0.597 5.597 4 C -0.253 4.253 5 H 0.080 0.920 6 C -0.037 4.037 7 N -0.906 5.906 8 Si 0.940 3.060 9 H -0.303 1.303 10 H -0.305 1.305 11 H -0.272 1.272 12 C 0.159 3.841 13 H 0.078 0.922 14 C -0.150 4.150 15 C 0.111 3.889 16 N -0.688 5.688 17 C 0.514 3.486 18 O -0.578 6.578 19 C 0.071 3.929 20 H 0.100 0.900 21 C -0.164 4.164 22 O -0.310 6.310 23 C 0.100 3.900 24 C -0.215 4.215 25 C -0.087 4.087 26 C -0.130 4.130 27 C -0.106 4.106 28 C -0.082 4.082 29 C -0.163 4.163 30 H 0.012 0.988 31 H 0.026 0.974 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.020 0.980 35 H 0.243 0.757 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.045 0.955 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.413 0.587 42 H 0.086 0.914 43 H 0.071 0.929 44 H 0.092 0.908 45 H 0.134 0.866 46 H 0.143 0.857 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.073 0.927 50 H 0.154 0.846 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.692 8.403 2.784 14.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.052 3.948 3 N -0.319 5.319 4 C -0.382 4.382 5 H 0.098 0.902 6 C -0.233 4.233 7 N -0.553 5.553 8 Si 0.771 3.229 9 H -0.231 1.231 10 H -0.233 1.233 11 H -0.197 1.197 12 C 0.052 3.948 13 H 0.096 0.904 14 C -0.209 4.209 15 C -0.015 4.015 16 N -0.340 5.340 17 C 0.299 3.701 18 O -0.458 6.458 19 C 0.012 3.988 20 H 0.118 0.882 21 C -0.222 4.222 22 O -0.224 6.224 23 C 0.056 3.944 24 C -0.233 4.233 25 C -0.105 4.105 26 C -0.131 4.131 27 C -0.163 4.163 28 C -0.100 4.100 29 C -0.182 4.182 30 H 0.031 0.969 31 H 0.045 0.955 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.038 0.962 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.250 0.750 42 H 0.105 0.895 43 H 0.090 0.910 44 H 0.110 0.890 45 H 0.151 0.849 46 H 0.161 0.839 47 H 0.092 0.908 48 H 0.097 0.903 49 H 0.092 0.908 50 H 0.172 0.828 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.897 8.097 3.643 14.845 hybrid contribution 0.846 -0.290 -1.467 1.719 sum -11.051 7.807 2.176 13.704 Atomic orbital electron populations 1.22397 0.99105 0.97837 1.00792 1.20460 0.92368 0.85027 0.96956 1.44319 1.76206 1.10333 1.01063 1.19508 1.32409 1.02354 0.83906 0.90217 1.25129 0.98554 1.00592 0.99035 1.70317 1.26742 1.33405 1.24847 0.85671 0.78913 0.77511 0.80815 1.23094 1.23293 1.19738 1.20777 0.91747 0.96434 0.85886 0.90420 1.22061 0.98911 1.00382 0.99578 1.22009 0.89503 0.97097 0.92865 1.45745 1.08419 1.60719 1.19067 1.20379 0.83603 0.78777 0.87302 1.90651 1.80520 1.52619 1.22014 1.22188 0.82187 0.99919 0.94543 0.88198 1.22278 1.03702 0.93004 1.03200 1.86131 1.12517 1.88407 1.35304 1.19379 0.86726 0.97829 0.90499 1.21490 1.00930 1.08481 0.92414 1.21154 0.91266 0.97521 1.00569 1.20234 0.96043 1.02329 0.94454 1.20762 0.93663 1.02888 0.98965 1.21153 0.98164 0.97516 0.93118 1.20668 0.89726 1.06624 1.01166 0.96920 0.95517 0.90989 0.93312 0.96230 0.94716 0.92624 0.90646 0.93564 0.91318 0.93461 0.74960 0.89474 0.91031 0.88968 0.84854 0.83913 0.90765 0.90314 0.90800 0.82789 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.38 8.99 71.98 0.65 -5.73 16 2 C 0.18 7.94 5.17 86.38 0.45 8.38 16 3 N -0.60 -25.18 1.95 -678.03 -1.32 -26.50 16 4 C -0.25 -11.71 9.41 84.03 0.79 -10.92 16 5 H 0.08 3.58 7.80 -2.91 -0.02 3.55 16 6 C -0.04 -1.82 4.85 84.86 0.41 -1.41 16 7 N -0.91 -46.85 8.49 21.65 0.18 -46.66 16 8 Si 0.94 41.16 29.63 68.60 2.03 43.19 16 9 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 10 H -0.31 -13.80 7.11 99.48 0.71 -13.09 16 11 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 12 C 0.16 5.44 2.88 44.99 0.13 5.57 16 13 H 0.08 2.55 7.78 -2.38 -0.02 2.53 16 14 C -0.15 -4.44 9.17 71.98 0.66 -3.78 16 15 C 0.11 3.81 4.28 86.38 0.37 4.18 16 16 N -0.69 -24.09 3.90 -463.07 -1.81 -25.90 16 17 C 0.51 19.08 6.97 87.66 0.61 19.70 16 18 O -0.58 -25.68 16.50 16.02 0.26 -25.42 16 19 C 0.07 2.24 2.65 29.85 0.08 2.32 16 20 H 0.10 3.12 6.31 -2.39 -0.02 3.10 16 21 C -0.16 -4.03 9.07 71.98 0.65 -3.38 16 22 O -0.31 -10.62 9.33 -73.36 -0.68 -11.31 16 23 C 0.10 2.98 6.60 22.51 0.15 3.13 16 24 C -0.21 -5.61 8.24 22.37 0.18 -5.42 16 25 C -0.09 -1.91 9.69 22.25 0.22 -1.69 16 26 C -0.13 -2.55 5.88 -19.85 -0.12 -2.67 16 27 C -0.11 -1.36 10.01 71.24 0.71 -0.65 16 28 C -0.08 -1.67 9.69 22.25 0.22 -1.45 16 29 C -0.16 -4.24 9.99 22.37 0.22 -4.02 16 30 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.03 1.15 4.29 -2.39 -0.01 1.14 16 32 H 0.07 3.58 6.07 -2.38 -0.01 3.57 16 33 H 0.05 2.50 6.02 -2.38 -0.01 2.48 16 34 H 0.02 0.82 6.44 -2.39 -0.02 0.80 16 35 H 0.24 12.64 8.31 -92.70 -0.77 11.87 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.05 1.42 6.68 -2.39 -0.02 1.41 16 39 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.05 1.82 6.38 -2.39 -0.02 1.80 16 41 H 0.41 14.63 7.31 -92.71 -0.68 13.96 16 42 H 0.09 1.88 6.92 -2.39 -0.02 1.86 16 43 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 44 H 0.09 2.09 7.56 -2.39 -0.02 2.07 16 45 H 0.13 3.33 5.43 -2.91 -0.02 3.31 16 46 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 47 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.08 0.78 8.09 -2.39 -0.02 0.77 16 49 H 0.07 0.82 8.08 -2.39 -0.02 0.80 16 50 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 51 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -61.05 397.15 5.30 -55.74 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: 0.25 Total: 34.70 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 6.38 Total: 2.15 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -2.95 Total: -99.06 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -0.42 Total: -36.73 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -61.05 5.30 -55.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156767074.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.614 kcal (2) G-P(sol) polarization free energy of solvation -61.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds