Wall clock time and date at job start Tue Mar 31 2020 19:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46491 * 109.47160 * 2 1 4 4 C 1.36943 * 120.00163 * 275.96349 * 3 2 1 5 5 H 1.07998 * 119.99711 * 34.45601 * 4 3 2 6 6 C 1.38809 * 120.00005 * 214.45660 * 4 3 2 7 7 N 1.31611 * 120.00371 * 13.17061 * 6 4 3 8 8 Si 1.86801 * 119.99842 * 193.17299 * 6 4 3 9 9 H 1.48505 * 109.47251 * 59.99854 * 8 6 4 10 10 H 1.48501 * 109.47254 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47167 * 300.00075 * 8 6 4 12 12 C 1.46500 * 120.00272 * 95.96276 * 3 2 1 13 13 H 1.09000 * 109.47433 * 180.15280 * 12 3 2 14 14 C 1.53005 * 109.46855 * 60.15707 * 12 3 2 15 15 C 1.52998 * 109.47275 * 300.16073 * 12 3 2 16 16 N 1.46497 * 109.46763 * 304.99836 * 15 12 3 17 17 C 1.34778 * 119.99849 * 180.02562 * 16 15 12 18 18 O 1.21280 * 120.00098 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.99900 * 179.97438 * 17 16 15 20 20 H 1.08995 * 109.47320 * 304.99153 * 19 17 16 21 21 C 1.52991 * 109.47338 * 64.99660 * 19 17 16 22 22 O 1.42906 * 109.46880 * 184.99842 * 19 17 16 23 23 C 1.35898 * 116.99868 * 155.92057 * 22 19 17 24 24 C 1.38730 * 120.05493 * 357.85754 * 23 22 19 25 25 C 1.38148 * 119.94198 * 179.97438 * 24 23 22 26 26 C 1.38269 * 120.05447 * 0.27113 * 25 24 23 27 27 C 1.50702 * 119.94312 * 179.72624 * 26 25 24 28 28 C 1.38266 * 120.11183 * 359.45076 * 26 25 24 29 29 C 1.38145 * 120.05649 * 0.54735 * 28 26 25 30 30 H 1.09001 * 109.47315 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46893 * 299.99715 * 1 2 3 32 32 H 1.08994 * 109.47260 * 59.99880 * 1 2 3 33 33 H 1.09004 * 109.47012 * 239.99754 * 2 1 3 34 34 H 1.09005 * 109.46821 * 120.00205 * 2 1 3 35 35 H 0.97001 * 120.00500 * 180.02562 * 7 6 4 36 36 H 1.08998 * 109.47115 * 60.00095 * 14 12 3 37 37 H 1.09001 * 109.47249 * 179.97438 * 14 12 3 38 38 H 1.09005 * 109.47244 * 300.00498 * 14 12 3 39 39 H 1.09002 * 109.47167 * 184.99383 * 15 12 3 40 40 H 1.09000 * 109.47200 * 64.99763 * 15 12 3 41 41 H 0.96997 * 120.00689 * 359.97438 * 16 15 12 42 42 H 1.09011 * 109.47372 * 59.99856 * 21 19 17 43 43 H 1.09001 * 109.47514 * 179.97438 * 21 19 17 44 44 H 1.08999 * 109.47497 * 300.00213 * 21 19 17 45 45 H 1.07992 * 120.02744 * 359.95022 * 24 23 22 46 46 H 1.08000 * 119.97478 * 179.97438 * 25 24 23 47 47 H 1.09003 * 109.47261 * 89.99865 * 27 26 25 48 48 H 1.08999 * 109.47258 * 210.00212 * 27 26 25 49 49 H 1.09006 * 109.47051 * 330.00036 * 27 26 25 50 50 H 1.07996 * 119.97165 * 180.25399 * 28 26 25 51 51 H 1.07993 * 120.03159 * 179.70006 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1304 2.0678 -1.1795 5 1 1.4180 1.8976 -1.9732 6 6 3.1597 2.9825 -1.3550 7 7 4.1691 3.0074 -0.5108 8 14 3.1121 4.1781 -2.7895 9 1 1.8947 5.0227 -2.6898 10 1 4.3185 5.0433 -2.7530 11 1 3.0849 3.4193 -4.0657 12 6 2.3868 2.0279 1.2618 13 1 2.7219 3.0460 1.0640 14 6 3.5163 1.2396 1.9281 15 6 1.1718 2.0622 2.1911 16 7 0.0518 2.7127 1.5066 17 6 -1.1309 2.8570 2.1367 18 8 -1.2680 2.4479 3.2701 19 6 -2.2829 3.5266 1.4327 20 1 -1.9731 4.5122 1.0854 21 6 -2.7131 2.6762 0.2359 22 8 -3.3797 3.6638 2.3385 23 6 -4.2785 4.6483 2.0743 24 6 -4.0847 5.4939 0.9917 25 6 -5.0002 6.4935 0.7250 26 6 -6.1058 6.6552 1.5394 27 6 -7.0996 7.7505 1.2497 28 6 -6.3042 5.8102 2.6156 29 6 -5.3917 4.8090 2.8865 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 4.8881 3.6468 -0.6333 36 1 4.3818 1.2151 1.2661 37 1 3.7908 1.7210 2.8667 38 1 3.1812 0.2213 2.1259 39 1 1.4202 2.6210 3.0934 40 1 0.8912 1.0439 2.4602 41 1 0.1615 3.0402 0.6002 42 1 -3.0230 1.6904 0.5832 43 1 -3.5467 3.1603 -0.2730 44 1 -1.8766 2.5715 -0.4550 45 1 -3.2188 5.3709 0.3582 46 1 -4.8496 7.1523 -0.1174 47 1 -7.8735 7.3717 0.5821 48 1 -7.5553 8.0836 2.1822 49 1 -6.5888 8.5885 0.7753 50 1 -7.1707 5.9360 3.2477 51 1 -5.5446 4.1522 3.7301 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156767075.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:27 Heat of formation + Delta-G solvation = -34.658197 kcal Electronic energy + Delta-G solvation = -29878.874431 eV Core-core repulsion = 25972.176810 eV Total energy + Delta-G solvation = -3906.697621 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.59023 -39.23983 -37.69854 -36.78536 -33.78525 -32.65612 -31.93144 -31.67748 -31.12251 -30.48949 -28.21860 -26.62890 -25.84771 -24.13827 -23.90122 -22.88215 -21.77061 -21.30944 -19.80229 -19.25147 -18.38579 -17.32049 -16.79059 -15.78354 -15.67240 -15.54780 -15.25731 -14.76687 -14.64110 -14.42942 -14.08921 -13.84762 -13.69207 -13.63829 -13.35128 -13.07553 -12.74095 -12.51771 -12.48620 -12.34889 -12.21725 -12.00068 -11.87216 -11.69411 -11.64142 -11.51675 -11.09218 -11.00803 -10.99257 -10.85386 -10.77751 -10.65548 -10.36710 -10.12366 -9.66929 -9.49121 -9.37965 -9.13638 -8.57856 -8.46701 -8.12340 -6.69187 -5.92685 -3.44894 1.20291 1.29498 2.79005 2.92121 3.26756 3.33763 3.35336 3.61019 3.90060 4.36239 4.62134 4.65818 4.72529 4.87477 4.92563 5.01051 5.09639 5.20534 5.23470 5.34078 5.35087 5.39342 5.56665 5.60137 5.62246 5.74285 5.87487 5.90530 6.01872 6.06517 6.15318 6.17179 6.22677 6.25053 6.34846 6.45355 6.45939 6.52571 6.59533 6.64964 6.66015 6.80889 6.87803 6.98973 7.12507 7.33776 7.46809 7.55819 7.70759 8.04327 8.39265 8.62514 9.11811 9.72120 10.29756 11.13622 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013486 B = 0.003078 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.731627 B = 9093.308414 C =10257.752853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.140 3.860 3 N -0.582 5.582 4 C -0.264 4.264 5 H 0.063 0.937 6 C 0.012 3.988 7 N -0.892 5.892 8 Si 0.899 3.101 9 H -0.284 1.284 10 H -0.291 1.291 11 H -0.282 1.282 12 C 0.176 3.824 13 H 0.103 0.897 14 C -0.143 4.143 15 C 0.103 3.897 16 N -0.695 5.695 17 C 0.511 3.489 18 O -0.537 6.537 19 C 0.065 3.935 20 H 0.096 0.904 21 C -0.173 4.173 22 O -0.285 6.285 23 C 0.132 3.868 24 C -0.209 4.209 25 C -0.078 4.078 26 C -0.133 4.133 27 C -0.108 4.108 28 C -0.081 4.081 29 C -0.149 4.149 30 H 0.033 0.967 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.040 0.960 34 H 0.037 0.963 35 H 0.256 0.744 36 H 0.078 0.922 37 H 0.033 0.967 38 H 0.029 0.971 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.411 0.589 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.132 0.868 46 H 0.124 0.876 47 H 0.066 0.934 48 H 0.063 0.937 49 H 0.063 0.937 50 H 0.127 0.873 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.244 5.303 2.359 17.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.394 4.394 5 H 0.081 0.919 6 C -0.188 4.188 7 N -0.535 5.535 8 Si 0.729 3.271 9 H -0.210 1.210 10 H -0.217 1.217 11 H -0.209 1.209 12 C 0.068 3.932 13 H 0.121 0.879 14 C -0.202 4.202 15 C -0.022 4.022 16 N -0.347 5.347 17 C 0.295 3.705 18 O -0.414 6.414 19 C 0.006 3.994 20 H 0.114 0.886 21 C -0.231 4.231 22 O -0.197 6.197 23 C 0.086 3.914 24 C -0.228 4.228 25 C -0.096 4.096 26 C -0.133 4.133 27 C -0.164 4.164 28 C -0.099 4.099 29 C -0.168 4.168 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.248 0.752 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.149 0.851 46 H 0.141 0.859 47 H 0.084 0.916 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.145 0.855 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.132 4.960 3.319 17.201 hybrid contribution 0.265 0.829 -1.419 1.664 sum -15.867 5.789 1.900 16.997 Atomic orbital electron populations 1.22473 1.00077 0.99095 1.01429 1.20761 0.91657 0.87468 0.98752 1.43863 1.76029 1.08205 1.02318 1.19043 1.07493 1.19144 0.93681 0.91929 1.25219 0.94685 1.01257 0.97630 1.69942 1.08966 1.36838 1.37759 0.86444 0.76991 0.81028 0.82645 1.20989 1.21658 1.20861 1.20531 0.88721 0.99828 0.84079 0.87910 1.22013 1.01058 0.97893 0.99278 1.22229 0.87740 0.96290 0.95961 1.45853 1.10442 1.59283 1.19125 1.19922 0.83522 0.80432 0.86649 1.90691 1.82952 1.49539 1.18217 1.22261 0.86266 1.00830 0.90084 0.88645 1.22308 1.03319 1.01008 0.96453 1.86220 1.33844 1.49464 1.50158 1.19107 0.90052 0.88177 0.94082 1.21334 1.02347 0.99029 1.00067 1.20824 0.93329 0.96911 0.98586 1.19811 0.97466 0.99023 0.96996 1.20700 0.97572 0.96219 1.01940 1.20819 0.98281 0.94021 0.96793 1.20436 0.93748 1.01232 1.01340 0.94832 0.92939 0.93457 0.94133 0.94481 0.93411 0.90302 0.94836 0.95194 0.92816 0.92692 0.75179 0.90826 0.91115 0.89475 0.85063 0.85851 0.91569 0.91792 0.91795 0.85535 0.85115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 9.87 37.16 0.37 -2.58 16 2 C 0.14 2.73 5.66 -4.05 -0.02 2.71 16 3 N -0.58 -12.56 1.85 -165.66 -0.31 -12.87 16 4 C -0.26 -6.27 9.28 -15.06 -0.14 -6.41 16 5 H 0.06 1.49 7.86 -52.49 -0.41 1.07 16 6 C 0.01 0.30 4.95 -17.43 -0.09 0.22 16 7 N -0.89 -23.02 10.40 55.49 0.58 -22.44 16 8 Si 0.90 19.69 29.57 -169.99 -5.03 14.66 16 9 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 C 0.18 3.65 1.91 -67.93 -0.13 3.52 16 13 H 0.10 2.43 5.99 -51.93 -0.31 2.12 16 14 C -0.14 -2.87 9.04 37.16 0.34 -2.53 16 15 C 0.10 1.94 4.34 -4.04 -0.02 1.92 16 16 N -0.69 -12.19 3.94 -60.29 -0.24 -12.43 16 17 C 0.51 9.08 6.94 -10.98 -0.08 9.00 16 18 O -0.54 -11.50 16.51 -14.30 -0.24 -11.74 16 19 C 0.07 0.95 2.65 -27.89 -0.07 0.88 16 20 H 0.10 1.22 5.99 -51.93 -0.31 0.91 16 21 C -0.17 -2.17 9.22 37.15 0.34 -1.83 16 22 O -0.28 -4.51 9.34 -39.28 -0.37 -4.87 16 23 C 0.13 1.79 6.57 -39.21 -0.26 1.53 16 24 C -0.21 -2.49 8.36 -39.43 -0.33 -2.82 16 25 C -0.08 -0.82 9.69 -39.60 -0.38 -1.20 16 26 C -0.13 -1.30 5.88 -104.60 -0.62 -1.92 16 27 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 28 C -0.08 -0.82 9.69 -39.61 -0.38 -1.20 16 29 C -0.15 -1.81 9.99 -39.43 -0.39 -2.20 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.93 5.01 -51.93 -0.26 0.67 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 34 H 0.04 0.70 6.45 -51.93 -0.33 0.37 16 35 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 36 H 0.08 1.80 7.37 -51.93 -0.38 1.41 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.03 0.56 6.67 -51.93 -0.35 0.21 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 1.07 7.07 -51.93 -0.37 0.70 16 41 H 0.41 7.19 7.68 -40.82 -0.31 6.88 16 42 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 43 H 0.07 0.78 7.36 -51.93 -0.38 0.39 16 44 H 0.09 1.07 7.92 -51.93 -0.41 0.66 16 45 H 0.13 1.42 5.67 -52.49 -0.30 1.12 16 46 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 47 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 49 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 50 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 51 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 403.64 15.07 6.08 6.08 Total: -1.00 -28.18 403.64 -9.35 -37.53 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -8.33 Total: 9.40 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -1.51 Total: -3.33 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.03 Total: -47.74 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.60 Total: -16.61 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.66 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -28.18 -9.35 -37.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156767075.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.873 kcal (2) G-P(sol) polarization free energy of solvation -28.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds