Wall clock time and date at job start Tue Mar 31 2020 19:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46491 * 109.47160 * 2 1 4 4 C 1.36943 * 120.00163 * 275.96349 * 3 2 1 5 5 H 1.07998 * 119.99711 * 34.45601 * 4 3 2 6 6 C 1.38809 * 120.00005 * 214.45660 * 4 3 2 7 7 N 1.31611 * 120.00371 * 13.17061 * 6 4 3 8 8 Si 1.86801 * 119.99842 * 193.17299 * 6 4 3 9 9 H 1.48505 * 109.47251 * 59.99854 * 8 6 4 10 10 H 1.48501 * 109.47254 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47167 * 300.00075 * 8 6 4 12 12 C 1.46500 * 120.00272 * 95.96276 * 3 2 1 13 13 H 1.09000 * 109.47433 * 180.15280 * 12 3 2 14 14 C 1.53005 * 109.46855 * 60.15707 * 12 3 2 15 15 C 1.52998 * 109.47275 * 300.16073 * 12 3 2 16 16 N 1.46497 * 109.46763 * 304.99836 * 15 12 3 17 17 C 1.34778 * 119.99849 * 180.02562 * 16 15 12 18 18 O 1.21280 * 120.00098 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.99900 * 179.97438 * 17 16 15 20 20 H 1.08995 * 109.47320 * 304.99153 * 19 17 16 21 21 C 1.52991 * 109.47338 * 64.99660 * 19 17 16 22 22 O 1.42906 * 109.46880 * 184.99842 * 19 17 16 23 23 C 1.35898 * 116.99868 * 155.92057 * 22 19 17 24 24 C 1.38730 * 120.05493 * 357.85754 * 23 22 19 25 25 C 1.38148 * 119.94198 * 179.97438 * 24 23 22 26 26 C 1.38269 * 120.05447 * 0.27113 * 25 24 23 27 27 C 1.50702 * 119.94312 * 179.72624 * 26 25 24 28 28 C 1.38266 * 120.11183 * 359.45076 * 26 25 24 29 29 C 1.38145 * 120.05649 * 0.54735 * 28 26 25 30 30 H 1.09001 * 109.47315 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46893 * 299.99715 * 1 2 3 32 32 H 1.08994 * 109.47260 * 59.99880 * 1 2 3 33 33 H 1.09004 * 109.47012 * 239.99754 * 2 1 3 34 34 H 1.09005 * 109.46821 * 120.00205 * 2 1 3 35 35 H 0.97001 * 120.00500 * 180.02562 * 7 6 4 36 36 H 1.08998 * 109.47115 * 60.00095 * 14 12 3 37 37 H 1.09001 * 109.47249 * 179.97438 * 14 12 3 38 38 H 1.09005 * 109.47244 * 300.00498 * 14 12 3 39 39 H 1.09002 * 109.47167 * 184.99383 * 15 12 3 40 40 H 1.09000 * 109.47200 * 64.99763 * 15 12 3 41 41 H 0.96997 * 120.00689 * 359.97438 * 16 15 12 42 42 H 1.09011 * 109.47372 * 59.99856 * 21 19 17 43 43 H 1.09001 * 109.47514 * 179.97438 * 21 19 17 44 44 H 1.08999 * 109.47497 * 300.00213 * 21 19 17 45 45 H 1.07992 * 120.02744 * 359.95022 * 24 23 22 46 46 H 1.08000 * 119.97478 * 179.97438 * 25 24 23 47 47 H 1.09003 * 109.47261 * 89.99865 * 27 26 25 48 48 H 1.08999 * 109.47258 * 210.00212 * 27 26 25 49 49 H 1.09006 * 109.47051 * 330.00036 * 27 26 25 50 50 H 1.07996 * 119.97165 * 180.25399 * 28 26 25 51 51 H 1.07993 * 120.03159 * 179.70006 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1304 2.0678 -1.1795 5 1 1.4180 1.8976 -1.9732 6 6 3.1597 2.9825 -1.3550 7 7 4.1691 3.0074 -0.5108 8 14 3.1121 4.1781 -2.7895 9 1 1.8947 5.0227 -2.6898 10 1 4.3185 5.0433 -2.7530 11 1 3.0849 3.4193 -4.0657 12 6 2.3868 2.0279 1.2618 13 1 2.7219 3.0460 1.0640 14 6 3.5163 1.2396 1.9281 15 6 1.1718 2.0622 2.1911 16 7 0.0518 2.7127 1.5066 17 6 -1.1309 2.8570 2.1367 18 8 -1.2680 2.4479 3.2701 19 6 -2.2829 3.5266 1.4327 20 1 -1.9731 4.5122 1.0854 21 6 -2.7131 2.6762 0.2359 22 8 -3.3797 3.6638 2.3385 23 6 -4.2785 4.6483 2.0743 24 6 -4.0847 5.4939 0.9917 25 6 -5.0002 6.4935 0.7250 26 6 -6.1058 6.6552 1.5394 27 6 -7.0996 7.7505 1.2497 28 6 -6.3042 5.8102 2.6156 29 6 -5.3917 4.8090 2.8865 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 4.8881 3.6468 -0.6333 36 1 4.3818 1.2151 1.2661 37 1 3.7908 1.7210 2.8667 38 1 3.1812 0.2213 2.1259 39 1 1.4202 2.6210 3.0934 40 1 0.8912 1.0439 2.4602 41 1 0.1615 3.0402 0.6002 42 1 -3.0230 1.6904 0.5832 43 1 -3.5467 3.1603 -0.2730 44 1 -1.8766 2.5715 -0.4550 45 1 -3.2188 5.3709 0.3582 46 1 -4.8496 7.1523 -0.1174 47 1 -7.8735 7.3717 0.5821 48 1 -7.5553 8.0836 2.1822 49 1 -6.5888 8.5885 0.7753 50 1 -7.1707 5.9360 3.2477 51 1 -5.5446 4.1522 3.7301 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156767075.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:26 Heat of formation + Delta-G solvation = -47.253870 kcal Electronic energy + Delta-G solvation = -29879.420620 eV Core-core repulsion = 25972.176810 eV Total energy + Delta-G solvation = -3907.243810 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.68187 -40.49444 -38.86156 -38.27575 -35.34525 -33.82065 -33.59094 -32.75269 -32.19261 -31.60562 -29.90889 -27.47843 -27.20839 -25.78850 -25.13605 -23.83388 -23.31988 -22.23871 -21.18434 -20.85564 -19.39711 -18.83230 -18.29443 -17.12290 -16.87901 -16.75256 -16.37470 -16.23124 -16.07379 -15.51450 -15.34832 -15.24468 -14.80874 -14.48320 -14.41207 -14.30620 -14.09042 -13.94909 -13.78457 -13.52516 -13.44556 -13.25945 -13.14577 -12.90994 -12.74367 -12.69755 -12.64630 -12.49364 -12.40145 -12.35557 -12.07493 -11.92318 -11.84844 -11.63520 -11.32936 -11.16723 -10.81256 -10.40972 -9.98749 -9.96639 -9.00755 -8.47909 -7.78836 -5.32276 0.37630 0.44143 1.51862 1.53290 1.56199 1.60611 1.63255 2.56231 2.66083 2.78639 3.36649 3.53496 3.66397 3.72770 3.84164 3.89710 3.98171 4.10869 4.24765 4.34084 4.45512 4.48117 4.51969 4.57873 4.61773 4.70023 4.72476 4.82051 4.84525 4.89596 4.91028 4.95643 4.98955 5.05467 5.09866 5.10413 5.18723 5.24949 5.35377 5.37894 5.39998 5.46077 5.61104 5.68889 5.73455 5.77527 5.85707 5.89947 6.36435 6.53335 6.62189 7.19234 7.27949 7.94657 8.47842 9.24875 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013486 B = 0.003078 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.731627 B = 9093.308414 C =10257.752853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.138 3.862 3 N -0.590 5.590 4 C -0.260 4.260 5 H 0.065 0.935 6 C -0.032 4.032 7 N -0.917 5.917 8 Si 0.954 3.046 9 H -0.272 1.272 10 H -0.303 1.303 11 H -0.284 1.284 12 C 0.183 3.817 13 H 0.075 0.925 14 C -0.135 4.135 15 C 0.115 3.885 16 N -0.689 5.689 17 C 0.511 3.489 18 O -0.577 6.577 19 C 0.071 3.929 20 H 0.114 0.886 21 C -0.164 4.164 22 O -0.311 6.311 23 C 0.102 3.898 24 C -0.215 4.215 25 C -0.085 4.085 26 C -0.131 4.131 27 C -0.107 4.107 28 C -0.082 4.082 29 C -0.165 4.165 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.031 0.969 34 H 0.041 0.959 35 H 0.248 0.752 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.040 0.960 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.413 0.587 42 H 0.063 0.937 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.139 0.861 46 H 0.146 0.854 47 H 0.077 0.923 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.152 0.848 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.508 6.369 1.426 19.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.013 3.987 3 N -0.312 5.312 4 C -0.390 4.390 5 H 0.083 0.917 6 C -0.230 4.230 7 N -0.562 5.562 8 Si 0.783 3.217 9 H -0.198 1.198 10 H -0.230 1.230 11 H -0.210 1.210 12 C 0.075 3.925 13 H 0.093 0.907 14 C -0.194 4.194 15 C -0.010 4.010 16 N -0.340 5.340 17 C 0.297 3.703 18 O -0.457 6.457 19 C 0.012 3.988 20 H 0.131 0.869 21 C -0.221 4.221 22 O -0.224 6.224 23 C 0.057 3.943 24 C -0.234 4.234 25 C -0.103 4.103 26 C -0.132 4.132 27 C -0.163 4.163 28 C -0.100 4.100 29 C -0.183 4.183 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.251 0.749 42 H 0.082 0.918 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.156 0.844 46 H 0.163 0.837 47 H 0.095 0.905 48 H 0.093 0.907 49 H 0.091 0.909 50 H 0.170 0.830 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.426 6.022 2.367 19.529 hybrid contribution 0.906 0.497 -1.104 1.512 sum -17.520 6.519 1.263 18.737 Atomic orbital electron populations 1.22286 0.97985 1.00289 1.01054 1.20838 0.93130 0.86261 0.98504 1.43975 1.76165 1.09036 1.02043 1.19244 1.06889 1.18702 0.94187 0.91744 1.25781 0.94691 1.02892 0.99587 1.70091 1.09481 1.37363 1.39227 0.85576 0.76635 0.79274 0.80216 1.19775 1.23030 1.21034 1.20357 0.89535 0.98329 0.84237 0.90669 1.21883 0.99662 0.98686 0.99165 1.21961 0.87392 0.96273 0.95416 1.45772 1.10271 1.58941 1.19019 1.20487 0.84039 0.79639 0.86136 1.90666 1.83636 1.51352 1.20051 1.22215 0.85146 1.01569 0.89893 0.86899 1.22250 1.04017 1.00277 0.95593 1.86167 1.34477 1.50754 1.51050 1.19370 0.90485 0.88814 0.95647 1.21475 1.03033 0.99162 0.99685 1.21160 0.93107 0.96697 0.99322 1.20230 0.97597 0.99156 0.96183 1.20763 0.97173 0.95475 1.02918 1.21140 0.98470 0.93171 0.97209 1.20650 0.94124 1.02103 1.01447 0.92881 0.93597 0.93423 0.95036 0.94073 0.94281 0.93233 0.93363 0.94053 0.92894 0.92965 0.74942 0.91792 0.89293 0.89102 0.84370 0.83671 0.90477 0.90652 0.90885 0.83048 0.85338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.15 9.87 71.98 0.71 -4.44 16 2 C 0.14 5.27 5.66 86.38 0.49 5.76 16 3 N -0.59 -25.26 1.85 -678.04 -1.25 -26.51 16 4 C -0.26 -12.23 9.28 84.03 0.78 -11.45 16 5 H 0.06 2.98 7.86 -2.91 -0.02 2.96 16 6 C -0.03 -1.58 4.95 84.86 0.42 -1.16 16 7 N -0.92 -48.07 10.40 21.65 0.23 -47.85 16 8 Si 0.95 40.33 29.57 68.60 2.03 42.36 16 9 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 10 H -0.30 -13.39 7.11 99.48 0.71 -12.69 16 11 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 12 C 0.18 7.61 1.91 44.99 0.09 7.70 16 13 H 0.08 3.61 5.99 -2.39 -0.01 3.60 16 14 C -0.13 -5.41 9.04 71.98 0.65 -4.76 16 15 C 0.12 4.32 4.34 86.38 0.37 4.70 16 16 N -0.69 -23.92 3.94 -463.06 -1.83 -25.75 16 17 C 0.51 18.10 6.94 87.66 0.61 18.71 16 18 O -0.58 -25.02 16.51 15.96 0.26 -24.76 16 19 C 0.07 2.03 2.65 29.85 0.08 2.10 16 20 H 0.11 2.76 5.99 -2.39 -0.01 2.75 16 21 C -0.16 -3.90 9.22 71.98 0.66 -3.24 16 22 O -0.31 -9.88 9.34 -73.41 -0.69 -10.56 16 23 C 0.10 2.72 6.57 22.51 0.15 2.86 16 24 C -0.22 -4.80 8.36 22.37 0.19 -4.61 16 25 C -0.08 -1.57 9.69 22.26 0.22 -1.35 16 26 C -0.13 -2.24 5.88 -19.85 -0.12 -2.36 16 27 C -0.11 -1.14 10.01 71.24 0.71 -0.43 16 28 C -0.08 -1.50 9.69 22.25 0.22 -1.29 16 29 C -0.16 -3.91 9.99 22.37 0.22 -3.69 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.57 5.01 -2.39 -0.01 1.56 16 32 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.03 1.25 8.09 -2.38 -0.02 1.23 16 34 H 0.04 1.52 6.45 -2.38 -0.02 1.51 16 35 H 0.25 12.96 8.31 -92.71 -0.77 12.19 16 36 H 0.05 2.28 7.37 -2.39 -0.02 2.27 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.04 1.53 6.67 -2.38 -0.02 1.51 16 39 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.05 2.00 7.07 -2.39 -0.02 1.98 16 41 H 0.41 14.18 7.68 -92.71 -0.71 13.46 16 42 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 43 H 0.09 1.79 7.36 -2.39 -0.02 1.77 16 44 H 0.09 2.08 7.92 -2.39 -0.02 2.06 16 45 H 0.14 2.75 5.67 -2.91 -0.02 2.73 16 46 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 47 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.07 0.65 8.09 -2.39 -0.02 0.63 16 49 H 0.07 0.67 8.08 -2.38 -0.02 0.65 16 50 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 51 H 0.13 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -60.90 403.64 5.41 -55.49 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: 0.21 Total: 34.51 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 6.45 Total: 3.07 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -2.85 Total: -100.11 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -0.42 Total: -35.32 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -60.90 5.41 -55.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156767075.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.234 kcal (2) G-P(sol) polarization free energy of solvation -60.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds