Wall clock time and date at job start Tue Mar 31 2020 19:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47109 * 2 1 4 4 C 1.36939 * 119.99581 * 274.78424 * 3 2 1 5 5 H 1.08001 * 120.00114 * 36.45611 * 4 3 2 6 6 C 1.38808 * 119.99888 * 216.45174 * 4 3 2 7 7 N 1.31623 * 120.00350 * 10.47480 * 6 4 3 8 8 Si 1.86804 * 120.00135 * 190.47519 * 6 4 3 9 9 H 1.48493 * 109.47236 * 89.99905 * 8 6 4 10 10 H 1.48501 * 109.46966 * 210.00091 * 8 6 4 11 11 H 1.48498 * 109.46840 * 329.99768 * 8 6 4 12 12 C 1.46495 * 120.00379 * 94.50677 * 3 2 1 13 13 H 1.09000 * 109.47242 * 178.30494 * 12 3 2 14 14 C 1.53000 * 109.46848 * 58.30679 * 12 3 2 15 15 C 1.53003 * 109.47313 * 298.30946 * 12 3 2 16 16 N 1.46503 * 109.46677 * 304.99438 * 15 12 3 17 17 C 1.34780 * 120.00091 * 179.97438 * 16 15 12 18 18 O 1.21283 * 119.99385 * 0.02562 * 17 16 15 19 19 C 1.50693 * 120.00121 * 180.02562 * 17 16 15 20 20 H 1.08999 * 109.47254 * 60.00675 * 19 17 16 21 21 C 1.52993 * 109.47251 * 300.00038 * 19 17 16 22 22 O 1.42901 * 109.46903 * 180.02562 * 19 17 16 23 23 C 1.35901 * 116.99979 * 203.43412 * 22 19 17 24 24 C 1.38759 * 120.05734 * 2.52929 * 23 22 19 25 25 C 1.38119 * 119.94752 * 180.02562 * 24 23 22 26 26 C 1.38283 * 120.05495 * 359.97438 * 25 24 23 27 27 C 1.38248 * 120.11126 * 0.03927 * 26 25 24 28 28 C 1.50704 * 119.97125 * 179.97438 * 27 26 25 29 29 C 1.38165 * 120.05785 * 359.67971 * 27 26 25 30 30 H 1.09005 * 109.47230 * 60.00028 * 1 2 3 31 31 H 1.08999 * 109.47105 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47680 * 300.00409 * 1 2 3 33 33 H 1.08993 * 109.47279 * 239.99688 * 2 1 3 34 34 H 1.09002 * 109.46768 * 119.99762 * 2 1 3 35 35 H 0.96997 * 120.00518 * 180.02562 * 7 6 4 36 36 H 1.09002 * 109.46960 * 180.02562 * 14 12 3 37 37 H 1.09000 * 109.47048 * 299.99933 * 14 12 3 38 38 H 1.08996 * 109.47064 * 60.00007 * 14 12 3 39 39 H 1.09000 * 109.47568 * 64.99552 * 15 12 3 40 40 H 1.09000 * 109.47174 * 185.00214 * 15 12 3 41 41 H 0.97001 * 120.00206 * 0.02562 * 16 15 12 42 42 H 1.08997 * 109.47326 * 180.02562 * 21 19 17 43 43 H 1.09000 * 109.47470 * 299.99928 * 21 19 17 44 44 H 1.08996 * 109.47211 * 60.00235 * 21 19 17 45 45 H 1.08004 * 120.02063 * 359.97438 * 24 23 22 46 46 H 1.08000 * 119.97378 * 180.02562 * 25 24 23 47 47 H 1.08007 * 119.94654 * 180.02562 * 26 25 24 48 48 H 1.09004 * 109.46884 * 90.00438 * 28 27 26 49 49 H 1.09001 * 109.47229 * 209.99770 * 28 27 26 50 50 H 1.09002 * 109.47134 * 330.00363 * 28 27 26 51 51 H 1.07995 * 120.03042 * 180.29355 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1533 2.0596 -1.1818 5 1 1.4376 1.9080 -1.9763 6 6 3.2099 2.9423 -1.3587 7 7 4.1921 2.9770 -0.4832 8 14 3.2378 4.0812 -2.8392 9 1 2.5560 5.3551 -2.4967 10 1 4.6451 4.3603 -3.2224 11 1 2.5347 3.4332 -3.9753 12 6 2.3565 2.0387 1.2647 13 1 2.7274 3.0437 1.0639 14 6 3.4371 1.2309 1.9863 15 6 1.1085 2.1221 2.1459 16 7 0.0341 2.7916 1.4085 17 6 -1.1676 2.9781 1.9898 18 8 -1.3592 2.5920 3.1234 19 6 -2.2729 3.6663 1.2311 20 1 -2.5021 3.0993 0.3289 21 6 -1.8253 5.0779 0.8465 22 8 -3.4385 3.7444 2.0541 23 6 -4.6341 3.8693 1.4202 24 6 -4.6896 3.8630 0.0337 25 6 -5.9059 3.9907 -0.6082 26 6 -7.0678 4.1241 0.1297 27 6 -7.0152 4.1309 1.5111 28 6 -8.2833 4.2770 2.3121 29 6 -5.8016 3.9977 2.1581 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.9303 3.5940 -0.6065 36 1 3.6885 1.7199 2.9275 37 1 3.0662 0.2258 2.1871 38 1 4.3262 1.1715 1.3586 39 1 0.7892 1.1166 2.4199 40 1 1.3379 2.6890 3.0481 41 1 0.1873 3.1001 0.5017 42 1 -2.6249 5.5758 0.2982 43 1 -1.5962 5.6450 1.7488 44 1 -0.9361 5.0188 0.2189 45 1 -3.7823 3.7593 -0.5429 46 1 -5.9496 3.9854 -1.6873 47 1 -8.0180 4.2233 -0.3741 48 1 -8.7008 3.2907 2.5146 49 1 -8.0621 4.7783 3.2544 50 1 -9.0041 4.8677 1.7467 51 1 -5.7616 3.9983 3.2373 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156767197.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:30 Heat of formation + Delta-G solvation = -35.540234 kcal Electronic energy + Delta-G solvation = -29896.321462 eV Core-core repulsion = 25989.585593 eV Total energy + Delta-G solvation = -3906.735869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.58754 -39.22646 -37.67266 -36.77510 -33.79888 -32.66662 -32.31276 -31.88571 -30.86822 -29.77968 -28.22022 -27.10770 -25.87796 -24.18943 -23.96797 -22.62284 -21.82315 -21.34956 -19.68208 -19.23540 -18.13316 -17.32116 -16.76033 -16.16739 -15.73117 -15.50196 -15.31138 -14.88056 -14.62753 -14.39358 -14.15405 -13.82081 -13.60968 -13.45469 -13.32218 -12.98653 -12.71653 -12.56728 -12.47190 -12.34536 -12.21885 -12.04270 -11.85284 -11.75011 -11.63597 -11.53471 -11.09495 -11.06741 -10.99138 -10.89502 -10.78862 -10.69087 -10.33413 -10.12568 -9.66769 -9.49833 -9.37510 -8.92721 -8.58763 -8.46198 -8.24667 -6.66257 -5.93067 -3.48702 1.18107 1.34506 2.77841 2.93869 3.25111 3.34488 3.35255 3.62297 3.89450 4.35331 4.61275 4.68599 4.74333 4.90055 4.96785 4.97747 5.11579 5.20272 5.23637 5.33166 5.35401 5.37454 5.52419 5.57506 5.59667 5.73836 5.87811 5.93587 6.01944 6.03309 6.15629 6.22244 6.22619 6.30834 6.34609 6.43958 6.45350 6.51583 6.59279 6.64539 6.65713 6.80451 6.87796 6.99570 7.11885 7.34347 7.46335 7.55482 7.69704 8.05570 8.40688 8.63570 9.11875 9.71031 10.29886 11.12783 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014652 B = 0.003025 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.526565 B = 9252.883573 C =10080.459190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.140 3.860 3 N -0.582 5.582 4 C -0.264 4.264 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.892 5.892 8 Si 0.899 3.101 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.279 1.279 12 C 0.174 3.826 13 H 0.105 0.895 14 C -0.143 4.143 15 C 0.102 3.898 16 N -0.694 5.694 17 C 0.511 3.489 18 O -0.537 6.537 19 C 0.065 3.935 20 H 0.098 0.902 21 C -0.175 4.175 22 O -0.284 6.284 23 C 0.141 3.859 24 C -0.219 4.219 25 C -0.074 4.074 26 C -0.165 4.165 27 C -0.050 4.050 28 C -0.114 4.114 29 C -0.155 4.155 30 H 0.045 0.955 31 H 0.033 0.967 32 H 0.050 0.950 33 H 0.042 0.958 34 H 0.037 0.963 35 H 0.255 0.745 36 H 0.033 0.967 37 H 0.030 0.970 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.412 0.588 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.131 0.869 46 H 0.124 0.876 47 H 0.121 0.879 48 H 0.072 0.928 49 H 0.068 0.932 50 H 0.067 0.933 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.027 3.036 1.626 17.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.013 3.987 3 N -0.304 5.304 4 C -0.394 4.394 5 H 0.080 0.920 6 C -0.187 4.187 7 N -0.535 5.535 8 Si 0.729 3.271 9 H -0.213 1.213 10 H -0.217 1.217 11 H -0.204 1.204 12 C 0.067 3.933 13 H 0.123 0.877 14 C -0.202 4.202 15 C -0.023 4.023 16 N -0.346 5.346 17 C 0.295 3.705 18 O -0.415 6.415 19 C 0.006 3.994 20 H 0.116 0.884 21 C -0.233 4.233 22 O -0.197 6.197 23 C 0.095 3.905 24 C -0.237 4.237 25 C -0.093 4.093 26 C -0.183 4.183 27 C -0.050 4.050 28 C -0.171 4.171 29 C -0.173 4.173 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.249 0.751 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.104 0.896 45 H 0.149 0.851 46 H 0.142 0.858 47 H 0.139 0.861 48 H 0.091 0.909 49 H 0.087 0.913 50 H 0.086 0.914 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.910 2.836 2.638 17.348 hybrid contribution 0.293 0.689 -1.531 1.704 sum -16.617 3.525 1.107 17.023 Atomic orbital electron populations 1.22461 1.00183 0.99084 1.01323 1.20773 0.91514 0.87534 0.98829 1.43838 1.76411 1.08130 1.02024 1.19083 1.06092 1.20855 0.93373 0.91989 1.25290 0.94752 1.01160 0.97453 1.69932 1.09387 1.37899 1.36235 0.86364 0.77030 0.80889 0.82858 1.21331 1.21682 1.20390 1.20555 0.88759 0.99696 0.84292 0.87739 1.21991 1.01171 0.98026 0.99016 1.22250 0.88898 0.95940 0.95194 1.45849 1.10781 1.58822 1.19195 1.19907 0.83449 0.80119 0.87032 1.90691 1.81722 1.50762 1.18298 1.22260 0.84676 0.98369 0.94131 0.88417 1.22322 1.03019 0.94725 1.03241 1.86213 1.11792 1.87107 1.34546 1.19074 0.85706 0.94708 0.91043 1.21334 0.99638 1.09309 0.93428 1.20918 0.91781 0.96784 0.99777 1.20907 0.98353 1.05749 0.93294 1.19687 0.94362 0.97036 0.93893 1.20803 0.94286 1.02373 0.99594 1.20288 0.89550 1.07247 1.00239 0.93550 0.94779 0.93114 0.93992 0.94454 0.93434 0.94743 0.95106 0.90504 0.92739 0.92842 0.75149 0.90989 0.90806 0.89645 0.85122 0.85780 0.86115 0.90927 0.91335 0.91387 0.85207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 9.87 37.16 0.37 -2.66 16 2 C 0.14 2.76 5.75 -4.04 -0.02 2.73 16 3 N -0.58 -12.64 1.87 -165.67 -0.31 -12.95 16 4 C -0.26 -6.30 9.14 -15.06 -0.14 -6.43 16 5 H 0.06 1.48 7.85 -52.49 -0.41 1.07 16 6 C 0.01 0.34 5.01 -17.43 -0.09 0.25 16 7 N -0.89 -22.98 10.54 55.49 0.59 -22.40 16 8 Si 0.90 19.65 29.57 -169.99 -5.03 14.62 16 9 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 12 C 0.17 3.62 1.92 -67.93 -0.13 3.49 16 13 H 0.10 2.47 5.97 -51.93 -0.31 2.16 16 14 C -0.14 -2.85 9.03 37.16 0.34 -2.51 16 15 C 0.10 1.94 4.34 -4.04 -0.02 1.92 16 16 N -0.69 -12.26 4.05 -60.29 -0.24 -12.50 16 17 C 0.51 9.14 7.10 -10.99 -0.08 9.07 16 18 O -0.54 -11.58 16.50 -14.36 -0.24 -11.81 16 19 C 0.07 0.96 2.66 -27.89 -0.07 0.88 16 20 H 0.10 1.28 6.01 -51.93 -0.31 0.97 16 21 C -0.18 -2.19 9.14 37.15 0.34 -1.85 16 22 O -0.28 -4.54 9.34 -39.34 -0.37 -4.91 16 23 C 0.14 1.94 6.55 -39.21 -0.26 1.68 16 24 C -0.22 -2.63 8.33 -39.43 -0.33 -2.95 16 25 C -0.07 -0.77 10.04 -39.61 -0.40 -1.17 16 26 C -0.16 -1.63 9.70 -39.56 -0.38 -2.01 16 27 C -0.05 -0.52 5.88 -104.64 -0.62 -1.13 16 28 C -0.11 -0.84 10.01 36.01 0.36 -0.48 16 29 C -0.15 -1.93 9.64 -39.43 -0.38 -2.31 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.93 5.06 -51.93 -0.26 0.67 16 33 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 34 H 0.04 0.71 6.34 -51.93 -0.33 0.39 16 35 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.03 0.57 6.60 -51.93 -0.34 0.23 16 38 H 0.08 1.74 7.53 -51.93 -0.39 1.35 16 39 H 0.05 1.06 6.90 -51.93 -0.36 0.71 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.41 7.24 7.20 -40.82 -0.29 6.95 16 42 H 0.07 0.79 7.31 -51.93 -0.38 0.41 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.08 1.02 7.56 -51.93 -0.39 0.63 16 45 H 0.13 1.43 5.67 -52.48 -0.30 1.14 16 46 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 47 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 50 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 51 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 402.90 15.07 6.07 6.07 Total: -1.00 -28.33 402.90 -9.32 -37.64 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -8.28 Total: 9.71 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -1.51 Total: -3.48 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.03 Total: -47.85 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.60 Total: -16.72 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -28.33 -9.32 -37.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156767197.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.104 kcal (2) G-P(sol) polarization free energy of solvation -28.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds