Wall clock time and date at job start Tue Mar 31 2020 19:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47109 * 2 1 4 4 C 1.36939 * 119.99581 * 274.78424 * 3 2 1 5 5 H 1.08001 * 120.00114 * 36.45611 * 4 3 2 6 6 C 1.38808 * 119.99888 * 216.45174 * 4 3 2 7 7 N 1.31623 * 120.00350 * 10.47480 * 6 4 3 8 8 Si 1.86804 * 120.00135 * 190.47519 * 6 4 3 9 9 H 1.48493 * 109.47236 * 89.99905 * 8 6 4 10 10 H 1.48501 * 109.46966 * 210.00091 * 8 6 4 11 11 H 1.48498 * 109.46840 * 329.99768 * 8 6 4 12 12 C 1.46495 * 120.00379 * 94.50677 * 3 2 1 13 13 H 1.09000 * 109.47242 * 178.30494 * 12 3 2 14 14 C 1.53000 * 109.46848 * 58.30679 * 12 3 2 15 15 C 1.53003 * 109.47313 * 298.30946 * 12 3 2 16 16 N 1.46503 * 109.46677 * 304.99438 * 15 12 3 17 17 C 1.34780 * 120.00091 * 179.97438 * 16 15 12 18 18 O 1.21283 * 119.99385 * 0.02562 * 17 16 15 19 19 C 1.50693 * 120.00121 * 180.02562 * 17 16 15 20 20 H 1.08999 * 109.47254 * 60.00675 * 19 17 16 21 21 C 1.52993 * 109.47251 * 300.00038 * 19 17 16 22 22 O 1.42901 * 109.46903 * 180.02562 * 19 17 16 23 23 C 1.35901 * 116.99979 * 203.43412 * 22 19 17 24 24 C 1.38759 * 120.05734 * 2.52929 * 23 22 19 25 25 C 1.38119 * 119.94752 * 180.02562 * 24 23 22 26 26 C 1.38283 * 120.05495 * 359.97438 * 25 24 23 27 27 C 1.38248 * 120.11126 * 0.03927 * 26 25 24 28 28 C 1.50704 * 119.97125 * 179.97438 * 27 26 25 29 29 C 1.38165 * 120.05785 * 359.67971 * 27 26 25 30 30 H 1.09005 * 109.47230 * 60.00028 * 1 2 3 31 31 H 1.08999 * 109.47105 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47680 * 300.00409 * 1 2 3 33 33 H 1.08993 * 109.47279 * 239.99688 * 2 1 3 34 34 H 1.09002 * 109.46768 * 119.99762 * 2 1 3 35 35 H 0.96997 * 120.00518 * 180.02562 * 7 6 4 36 36 H 1.09002 * 109.46960 * 180.02562 * 14 12 3 37 37 H 1.09000 * 109.47048 * 299.99933 * 14 12 3 38 38 H 1.08996 * 109.47064 * 60.00007 * 14 12 3 39 39 H 1.09000 * 109.47568 * 64.99552 * 15 12 3 40 40 H 1.09000 * 109.47174 * 185.00214 * 15 12 3 41 41 H 0.97001 * 120.00206 * 0.02562 * 16 15 12 42 42 H 1.08997 * 109.47326 * 180.02562 * 21 19 17 43 43 H 1.09000 * 109.47470 * 299.99928 * 21 19 17 44 44 H 1.08996 * 109.47211 * 60.00235 * 21 19 17 45 45 H 1.08004 * 120.02063 * 359.97438 * 24 23 22 46 46 H 1.08000 * 119.97378 * 180.02562 * 25 24 23 47 47 H 1.08007 * 119.94654 * 180.02562 * 26 25 24 48 48 H 1.09004 * 109.46884 * 90.00438 * 28 27 26 49 49 H 1.09001 * 109.47229 * 209.99770 * 28 27 26 50 50 H 1.09002 * 109.47134 * 330.00363 * 28 27 26 51 51 H 1.07995 * 120.03042 * 180.29355 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1533 2.0596 -1.1818 5 1 1.4376 1.9080 -1.9763 6 6 3.2099 2.9423 -1.3587 7 7 4.1921 2.9770 -0.4832 8 14 3.2378 4.0812 -2.8392 9 1 2.5560 5.3551 -2.4967 10 1 4.6451 4.3603 -3.2224 11 1 2.5347 3.4332 -3.9753 12 6 2.3565 2.0387 1.2647 13 1 2.7274 3.0437 1.0639 14 6 3.4371 1.2309 1.9863 15 6 1.1085 2.1221 2.1459 16 7 0.0341 2.7916 1.4085 17 6 -1.1676 2.9781 1.9898 18 8 -1.3592 2.5920 3.1234 19 6 -2.2729 3.6663 1.2311 20 1 -2.5021 3.0993 0.3289 21 6 -1.8253 5.0779 0.8465 22 8 -3.4385 3.7444 2.0541 23 6 -4.6341 3.8693 1.4202 24 6 -4.6896 3.8630 0.0337 25 6 -5.9059 3.9907 -0.6082 26 6 -7.0678 4.1241 0.1297 27 6 -7.0152 4.1309 1.5111 28 6 -8.2833 4.2770 2.3121 29 6 -5.8016 3.9977 2.1581 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.9303 3.5940 -0.6065 36 1 3.6885 1.7199 2.9275 37 1 3.0662 0.2258 2.1871 38 1 4.3262 1.1715 1.3586 39 1 0.7892 1.1166 2.4199 40 1 1.3379 2.6890 3.0481 41 1 0.1873 3.1001 0.5017 42 1 -2.6249 5.5758 0.2982 43 1 -1.5962 5.6450 1.7488 44 1 -0.9361 5.0188 0.2189 45 1 -3.7823 3.7593 -0.5429 46 1 -5.9496 3.9854 -1.6873 47 1 -8.0180 4.2233 -0.3741 48 1 -8.7008 3.2907 2.5146 49 1 -8.0621 4.7783 3.2544 50 1 -9.0041 4.8677 1.7467 51 1 -5.7616 3.9983 3.2373 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156767197.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:29 Heat of formation + Delta-G solvation = -48.326692 kcal Electronic energy + Delta-G solvation = -29896.875924 eV Core-core repulsion = 25989.585593 eV Total energy + Delta-G solvation = -3907.290331 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.68861 -40.49381 -38.85894 -38.26498 -35.36187 -33.81886 -33.43031 -33.39044 -32.32100 -30.71691 -29.92044 -27.83353 -27.31338 -25.77810 -25.36594 -23.47044 -23.36278 -22.43884 -21.10459 -20.78350 -19.16560 -18.83795 -18.22383 -17.22439 -16.88733 -16.82702 -16.66445 -16.27547 -16.16261 -15.62774 -15.26246 -15.20392 -14.75294 -14.50690 -14.34103 -14.28700 -14.02822 -13.90989 -13.81455 -13.50447 -13.43866 -13.24391 -13.17586 -12.90923 -12.76214 -12.71361 -12.70494 -12.56169 -12.41513 -12.36855 -12.02944 -11.99606 -11.86312 -11.69441 -11.33422 -11.18386 -10.82067 -10.42593 -9.99137 -9.75025 -9.15873 -8.45519 -7.79204 -5.36423 0.35351 0.47766 1.50994 1.51683 1.56397 1.61847 1.62835 2.55230 2.64622 2.79361 3.36424 3.53637 3.65441 3.72826 3.83107 3.91946 3.94161 4.18580 4.24506 4.32962 4.42553 4.46326 4.51727 4.56998 4.60434 4.63503 4.68189 4.80599 4.84349 4.87585 4.88440 4.94199 4.97637 5.01266 5.04254 5.07446 5.23369 5.24734 5.32651 5.36734 5.45747 5.49710 5.57691 5.64736 5.74031 5.76645 5.84737 5.88316 6.36554 6.54177 6.62360 7.19091 7.27915 7.93264 8.47615 9.24095 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014652 B = 0.003025 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.526565 B = 9252.883573 C =10080.459190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.138 3.862 3 N -0.591 5.591 4 C -0.261 4.261 5 H 0.063 0.937 6 C -0.030 4.030 7 N -0.917 5.917 8 Si 0.955 3.045 9 H -0.281 1.281 10 H -0.305 1.305 11 H -0.273 1.273 12 C 0.181 3.819 13 H 0.077 0.923 14 C -0.134 4.134 15 C 0.114 3.886 16 N -0.688 5.688 17 C 0.511 3.489 18 O -0.578 6.578 19 C 0.072 3.928 20 H 0.115 0.885 21 C -0.168 4.168 22 O -0.311 6.311 23 C 0.113 3.887 24 C -0.227 4.227 25 C -0.076 4.076 26 C -0.163 4.163 27 C -0.052 4.052 28 C -0.113 4.113 29 C -0.175 4.175 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.033 0.967 34 H 0.042 0.958 35 H 0.248 0.752 36 H 0.049 0.951 37 H 0.042 0.958 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.413 0.587 42 H 0.090 0.910 43 H 0.064 0.936 44 H 0.090 0.910 45 H 0.138 0.862 46 H 0.150 0.850 47 H 0.149 0.851 48 H 0.081 0.919 49 H 0.070 0.930 50 H 0.086 0.914 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.482 3.286 0.258 19.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.013 3.987 3 N -0.313 5.313 4 C -0.391 4.391 5 H 0.081 0.919 6 C -0.227 4.227 7 N -0.561 5.561 8 Si 0.784 3.216 9 H -0.208 1.208 10 H -0.232 1.232 11 H -0.198 1.198 12 C 0.074 3.926 13 H 0.095 0.905 14 C -0.194 4.194 15 C -0.011 4.011 16 N -0.339 5.339 17 C 0.297 3.703 18 O -0.458 6.458 19 C 0.013 3.987 20 H 0.132 0.868 21 C -0.226 4.226 22 O -0.225 6.225 23 C 0.068 3.932 24 C -0.246 4.246 25 C -0.094 4.094 26 C -0.181 4.181 27 C -0.052 4.052 28 C -0.170 4.170 29 C -0.194 4.194 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.251 0.749 42 H 0.108 0.892 43 H 0.083 0.917 44 H 0.109 0.891 45 H 0.156 0.844 46 H 0.168 0.832 47 H 0.167 0.833 48 H 0.100 0.900 49 H 0.089 0.911 50 H 0.105 0.895 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.391 3.081 1.252 19.674 hybrid contribution 0.975 0.558 -1.099 1.572 sum -18.416 3.639 0.153 18.773 Atomic orbital electron populations 1.22279 0.98297 1.00276 1.00766 1.20841 0.92830 0.86391 0.98663 1.43954 1.76576 1.08944 1.01797 1.19256 1.05554 1.20436 0.93866 0.91945 1.25846 0.94739 1.02681 0.99465 1.70077 1.09838 1.38532 1.37630 0.85482 0.75982 0.79578 0.80565 1.20764 1.23203 1.19842 1.20385 0.89556 0.98279 0.84380 0.90465 1.21863 0.99695 0.98795 0.99002 1.21991 0.88449 0.95907 0.94787 1.45771 1.10665 1.58463 1.19049 1.20475 0.83881 0.79337 0.86621 1.90665 1.82435 1.52522 1.20176 1.22207 0.83556 0.99304 0.93679 0.86774 1.22287 1.03812 0.93367 1.03087 1.86161 1.12707 1.87897 1.35711 1.19347 0.85114 0.96678 0.92087 1.21484 1.00803 1.09594 0.92696 1.21285 0.91250 0.95694 1.01200 1.21312 0.99483 1.04203 0.93116 1.20059 0.94599 0.95859 0.94678 1.20871 0.93233 1.03261 0.99592 1.20495 0.90278 1.08314 1.00288 0.93716 0.92736 0.93920 0.94816 0.93948 0.94215 0.93214 0.93944 0.93360 0.93071 0.92873 0.74921 0.89159 0.91685 0.89087 0.84433 0.83224 0.83292 0.90047 0.91137 0.89504 0.85765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.29 9.87 71.98 0.71 -4.58 16 2 C 0.14 5.32 5.75 86.38 0.50 5.82 16 3 N -0.59 -25.44 1.87 -678.05 -1.26 -26.70 16 4 C -0.26 -12.30 9.14 84.03 0.77 -11.53 16 5 H 0.06 2.92 7.85 -2.91 -0.02 2.89 16 6 C -0.03 -1.46 5.01 84.86 0.43 -1.03 16 7 N -0.92 -47.91 10.54 21.65 0.23 -47.68 16 8 Si 0.95 40.26 29.57 68.60 2.03 42.29 16 9 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 10 H -0.30 -13.50 7.11 99.48 0.71 -12.80 16 11 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 12 C 0.18 7.56 1.92 44.99 0.09 7.64 16 13 H 0.08 3.71 5.97 -2.39 -0.01 3.69 16 14 C -0.13 -5.36 9.03 71.98 0.65 -4.71 16 15 C 0.11 4.31 4.34 86.38 0.37 4.69 16 16 N -0.69 -24.14 4.05 -463.05 -1.87 -26.01 16 17 C 0.51 18.30 7.10 87.65 0.62 18.92 16 18 O -0.58 -25.28 16.50 16.00 0.26 -25.02 16 19 C 0.07 2.07 2.66 29.84 0.08 2.15 16 20 H 0.11 2.86 6.01 -2.39 -0.01 2.85 16 21 C -0.17 -4.03 9.14 71.98 0.66 -3.37 16 22 O -0.31 -10.04 9.34 -73.40 -0.69 -10.73 16 23 C 0.11 3.07 6.55 22.51 0.15 3.22 16 24 C -0.23 -5.10 8.33 22.37 0.19 -4.91 16 25 C -0.08 -1.38 10.04 22.25 0.22 -1.15 16 26 C -0.16 -2.74 9.70 22.28 0.22 -2.52 16 27 C -0.05 -0.98 5.88 -19.88 -0.12 -1.10 16 28 C -0.11 -1.41 10.01 71.24 0.71 -0.69 16 29 C -0.18 -4.31 9.64 22.37 0.22 -4.10 16 30 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.04 1.51 5.06 -2.39 -0.01 1.49 16 33 H 0.03 1.34 8.08 -2.39 -0.02 1.32 16 34 H 0.04 1.58 6.34 -2.39 -0.02 1.56 16 35 H 0.25 12.90 8.31 -92.71 -0.77 12.13 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.04 1.56 6.60 -2.39 -0.02 1.54 16 38 H 0.05 2.20 7.53 -2.39 -0.02 2.18 16 39 H 0.05 1.98 6.90 -2.39 -0.02 1.96 16 40 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.41 14.33 7.20 -92.71 -0.67 13.66 16 42 H 0.09 1.83 7.31 -2.39 -0.02 1.81 16 43 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.09 2.06 7.56 -2.39 -0.02 2.04 16 45 H 0.14 2.76 5.67 -2.91 -0.02 2.75 16 46 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 47 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 48 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 49 H 0.07 0.85 8.09 -2.39 -0.02 0.83 16 50 H 0.09 0.76 8.09 -2.39 -0.02 0.74 16 51 H 0.12 3.04 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -61.33 402.90 5.41 -55.92 By element: Atomic # 1 Polarization: 34.94 SS G_CDS: 0.26 Total: 35.20 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 6.46 Total: 2.73 kcal Atomic # 7 Polarization: -97.49 SS G_CDS: -2.91 Total: -100.40 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -0.42 Total: -35.75 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Total: -61.33 5.41 -55.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156767197.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.597 kcal (2) G-P(sol) polarization free energy of solvation -61.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds