Wall clock time and date at job start Tue Mar 31 2020 19:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46742 * 2 1 4 4 C 1.36933 * 119.99962 * 84.10138 * 3 2 1 5 5 H 1.08004 * 120.00523 * 33.87339 * 4 3 2 6 6 C 1.38807 * 119.99904 * 214.15549 * 4 3 2 7 7 N 1.31618 * 120.00290 * 12.28617 * 6 4 3 8 8 Si 1.86808 * 120.00010 * 192.28278 * 6 4 3 9 9 H 1.48501 * 109.46921 * 60.00201 * 8 6 4 10 10 H 1.48500 * 109.46828 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47098 * 299.99835 * 8 6 4 12 12 C 1.46498 * 119.99935 * 264.09049 * 3 2 1 13 13 H 1.09005 * 109.46968 * 179.97438 * 12 3 2 14 14 C 1.53000 * 109.47154 * 59.93247 * 12 3 2 15 15 C 1.52998 * 109.47393 * 299.93066 * 12 3 2 16 16 N 1.46497 * 109.47068 * 305.00059 * 15 12 3 17 17 C 1.34779 * 120.00090 * 180.02562 * 16 15 12 18 18 O 1.21288 * 119.99925 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00216 * 180.02562 * 17 16 15 20 20 H 1.09001 * 109.46935 * 304.99024 * 19 17 16 21 21 C 1.52995 * 109.47431 * 64.99492 * 19 17 16 22 22 O 1.42902 * 109.47151 * 184.99791 * 19 17 16 23 23 C 1.35896 * 117.00028 * 155.17612 * 22 19 17 24 24 C 1.38758 * 120.05662 * 185.54260 * 23 22 19 25 25 C 1.38126 * 119.94555 * 180.02562 * 24 23 22 26 26 C 1.38281 * 120.05194 * 359.97438 * 25 24 23 27 27 C 1.38241 * 120.11974 * 0.04572 * 26 25 24 28 28 C 1.50696 * 119.97729 * 179.97438 * 27 26 25 29 29 C 1.38174 * 120.04957 * 359.67877 * 27 26 25 30 30 H 1.09002 * 109.46863 * 300.00034 * 1 2 3 31 31 H 1.08998 * 109.46939 * 59.99394 * 1 2 3 32 32 H 1.08992 * 109.47108 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47076 * 240.00423 * 2 1 3 34 34 H 1.08994 * 109.47141 * 120.00128 * 2 1 3 35 35 H 0.97004 * 120.00444 * 180.02562 * 7 6 4 36 36 H 1.09006 * 109.46980 * 299.99962 * 14 12 3 37 37 H 1.09010 * 109.47013 * 59.99584 * 14 12 3 38 38 H 1.08997 * 109.47234 * 179.97438 * 14 12 3 39 39 H 1.08994 * 109.46894 * 65.00446 * 15 12 3 40 40 H 1.08999 * 109.46714 * 185.00179 * 15 12 3 41 41 H 0.96996 * 120.00193 * 359.97438 * 16 15 12 42 42 H 1.09001 * 109.47443 * 59.99843 * 21 19 17 43 43 H 1.08999 * 109.47063 * 180.02562 * 21 19 17 44 44 H 1.08999 * 109.47130 * 300.00091 * 21 19 17 45 45 H 1.08005 * 120.02245 * 359.97438 * 24 23 22 46 46 H 1.07999 * 119.97074 * 180.02562 * 25 24 23 47 47 H 1.08011 * 119.94008 * 180.02562 * 26 25 24 48 48 H 1.09005 * 109.47122 * 89.99901 * 28 27 26 49 49 H 1.09005 * 109.47272 * 210.00018 * 28 27 26 50 50 H 1.09001 * 109.47027 * 330.00112 * 28 27 26 51 51 H 1.08003 * 120.02586 * 180.30262 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1316 2.0674 1.1796 5 1 2.4034 1.5445 2.0847 6 6 1.8913 3.4341 1.2133 7 7 1.3256 4.0285 0.1843 8 14 2.3708 4.4299 2.7194 9 1 3.8348 4.3174 2.9416 10 1 2.0111 5.8547 2.5058 11 1 1.6483 3.9092 3.9077 12 6 2.3856 2.0284 -1.2620 13 1 2.7230 3.0458 -1.0639 14 6 1.1691 2.0649 -2.1893 15 6 3.5130 1.2392 -1.9306 16 7 4.6334 1.1020 -0.9968 17 6 5.7457 0.4395 -1.3715 18 8 5.8188 -0.0436 -2.4816 19 6 6.8980 0.2978 -0.4107 20 1 7.2045 1.2844 -0.0630 21 6 6.4637 -0.5522 0.7849 22 8 7.9947 -0.3359 -1.0724 23 6 9.2372 -0.0920 -0.5789 24 6 10.3555 -0.5801 -1.2396 25 6 11.6173 -0.3314 -0.7358 26 6 11.7666 0.4039 0.4258 27 6 10.6541 0.8910 1.0862 28 6 10.8204 1.6914 2.3522 29 6 9.3900 0.6497 0.5832 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.1580 4.9837 0.2077 36 1 0.8325 1.0473 -2.3873 37 1 0.3659 2.6272 -1.7129 38 1 1.4423 2.5468 -3.1280 39 1 3.1488 0.2504 -2.2090 40 1 3.8467 1.7681 -2.8233 41 1 4.5751 1.4886 -0.1091 42 1 6.1572 -1.5387 0.4372 43 1 7.2971 -0.6542 1.4800 44 1 5.6272 -0.0688 1.2896 45 1 10.2393 -1.1548 -2.1467 46 1 12.4880 -0.7107 -1.2499 47 1 12.7541 0.5977 0.8180 48 1 10.9107 2.7490 2.1041 49 1 9.9520 1.5415 2.9936 50 1 11.7190 1.3628 2.8744 51 1 8.5214 1.0346 1.0968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156767198.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:34 Heat of formation + Delta-G solvation = -37.707331 kcal Electronic energy + Delta-G solvation = -29730.312411 eV Core-core repulsion = 25823.482570 eV Total energy + Delta-G solvation = -3906.829841 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.59777 -39.19440 -37.61797 -36.78671 -33.87535 -33.06315 -31.99585 -31.74959 -30.53037 -29.97025 -28.36165 -27.07928 -25.87767 -24.32408 -23.89364 -22.32718 -21.65363 -21.55089 -19.83062 -19.29669 -17.99512 -17.36365 -16.74114 -16.19138 -15.65393 -15.62416 -15.21568 -14.73613 -14.72471 -14.35941 -14.08329 -13.83870 -13.65309 -13.44488 -13.34467 -13.12406 -12.74683 -12.57724 -12.52908 -12.22936 -12.13804 -11.94624 -11.71336 -11.60338 -11.57458 -11.45215 -11.31305 -11.08241 -11.00015 -10.89752 -10.84227 -10.51480 -10.34916 -9.99536 -9.63897 -9.56652 -9.39546 -8.94320 -8.60242 -8.47655 -8.24034 -6.71258 -5.92245 -3.43761 1.18872 1.32625 2.78938 2.92064 3.26622 3.33599 3.35336 3.63014 3.89135 4.36461 4.55643 4.69666 4.72455 4.92100 4.95847 5.02277 5.12290 5.21636 5.25063 5.34601 5.40227 5.44092 5.46969 5.58644 5.63233 5.67577 5.88263 5.95945 6.05851 6.08806 6.13308 6.21092 6.30165 6.31079 6.42698 6.44457 6.48156 6.53229 6.65145 6.66521 6.68968 6.75598 6.95174 7.00286 7.25161 7.34176 7.48223 7.57006 7.69701 8.04414 8.39082 8.62464 9.11565 9.71806 10.29173 11.14052 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012692 B = 0.003189 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.507238 B = 8777.458561 C =10147.129184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.142 3.858 3 N -0.582 5.582 4 C -0.263 4.263 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.892 5.892 8 Si 0.899 3.101 9 H -0.283 1.283 10 H -0.291 1.291 11 H -0.283 1.283 12 C 0.176 3.824 13 H 0.106 0.894 14 C -0.142 4.142 15 C 0.102 3.898 16 N -0.696 5.696 17 C 0.511 3.489 18 O -0.537 6.537 19 C 0.067 3.933 20 H 0.096 0.904 21 C -0.174 4.174 22 O -0.285 6.285 23 C 0.139 3.861 24 C -0.158 4.158 25 C -0.078 4.078 26 C -0.165 4.165 27 C -0.047 4.047 28 C -0.117 4.117 29 C -0.214 4.214 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.027 0.973 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.255 0.745 36 H 0.030 0.970 37 H 0.077 0.923 38 H 0.031 0.969 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.412 0.588 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.130 0.870 46 H 0.127 0.873 47 H 0.121 0.879 48 H 0.073 0.927 49 H 0.068 0.932 50 H 0.067 0.933 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.139 -5.509 1.678 16.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.016 3.984 3 N -0.304 5.304 4 C -0.393 4.393 5 H 0.081 0.919 6 C -0.188 4.188 7 N -0.535 5.535 8 Si 0.728 3.272 9 H -0.210 1.210 10 H -0.217 1.217 11 H -0.209 1.209 12 C 0.068 3.932 13 H 0.123 0.877 14 C -0.202 4.202 15 C -0.023 4.023 16 N -0.348 5.348 17 C 0.294 3.706 18 O -0.414 6.414 19 C 0.007 3.993 20 H 0.113 0.887 21 C -0.232 4.232 22 O -0.197 6.197 23 C 0.094 3.906 24 C -0.177 4.177 25 C -0.096 4.096 26 C -0.183 4.183 27 C -0.047 4.047 28 C -0.174 4.174 29 C -0.232 4.232 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.096 0.904 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.248 0.752 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.106 0.894 45 H 0.148 0.852 46 H 0.145 0.855 47 H 0.139 0.861 48 H 0.091 0.909 49 H 0.087 0.913 50 H 0.086 0.914 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 15.049 -5.787 0.702 16.138 hybrid contribution -0.088 0.927 1.352 1.642 sum 14.961 -4.860 2.055 15.865 Atomic orbital electron populations 1.22377 0.99761 0.98315 1.02102 1.20795 0.91944 0.87648 0.97980 1.43932 1.73776 1.09785 1.02908 1.19082 1.41533 0.90597 0.88076 0.91859 1.25203 0.98106 0.98412 0.97063 1.69931 1.43278 1.10042 1.30268 0.86453 0.78374 0.79349 0.82984 1.20988 1.21673 1.20908 1.20549 0.90009 0.97472 0.85133 0.87660 1.22087 1.00761 0.99418 0.97884 1.22192 0.87385 1.00891 0.91823 1.45817 1.14865 1.54878 1.19282 1.19945 0.83546 0.79398 0.87667 1.90691 1.81335 1.47977 1.21446 1.22248 0.86087 0.98060 0.92898 0.88672 1.22319 1.03068 1.01459 0.96348 1.86215 1.11818 1.66802 1.54840 1.19095 0.84949 0.94358 0.92245 1.20452 0.90175 1.05119 1.01948 1.20920 0.96255 0.96942 0.95478 1.20911 0.98151 1.02031 0.97203 1.19713 0.92423 0.96337 0.96216 1.20836 1.02777 0.99481 0.94293 1.21242 0.98421 1.05253 0.98331 0.92914 0.93158 0.95407 0.94544 0.94641 0.93436 0.95056 0.90376 0.95024 0.92813 0.92703 0.75170 0.90814 0.91040 0.89450 0.85179 0.85472 0.86125 0.90883 0.91315 0.91397 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 10.01 37.16 0.37 -2.78 16 2 C 0.14 2.78 5.62 -4.04 -0.02 2.76 16 3 N -0.58 -12.50 1.85 -165.66 -0.31 -12.80 16 4 C -0.26 -6.22 9.27 -15.06 -0.14 -6.36 16 5 H 0.06 1.49 7.86 -52.48 -0.41 1.08 16 6 C 0.01 0.30 4.98 -17.43 -0.09 0.21 16 7 N -0.89 -22.86 10.37 55.49 0.58 -22.28 16 8 Si 0.90 19.62 29.57 -169.99 -5.03 14.59 16 9 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 C 0.18 3.64 1.91 -67.93 -0.13 3.51 16 13 H 0.11 2.48 5.93 -51.93 -0.31 2.18 16 14 C -0.14 -2.85 8.10 37.16 0.30 -2.55 16 15 C 0.10 1.93 4.94 -4.04 -0.02 1.91 16 16 N -0.70 -12.27 5.35 -60.30 -0.32 -12.59 16 17 C 0.51 9.10 7.18 -10.99 -0.08 9.03 16 18 O -0.54 -11.55 16.51 -14.31 -0.24 -11.79 16 19 C 0.07 0.97 2.64 -27.89 -0.07 0.90 16 20 H 0.10 1.22 6.31 -51.93 -0.33 0.89 16 21 C -0.17 -2.16 9.12 37.16 0.34 -1.82 16 22 O -0.28 -4.51 9.34 -39.27 -0.37 -4.87 16 23 C 0.14 1.91 6.60 -39.22 -0.26 1.65 16 24 C -0.16 -1.93 9.99 -39.43 -0.39 -2.33 16 25 C -0.08 -0.78 10.04 -39.61 -0.40 -1.18 16 26 C -0.16 -1.61 9.70 -39.56 -0.38 -2.00 16 27 C -0.05 -0.49 5.88 -104.65 -0.62 -1.11 16 28 C -0.12 -0.94 10.01 36.00 0.36 -0.58 16 29 C -0.21 -2.56 7.89 -39.43 -0.31 -2.87 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.98 6.10 -51.93 -0.32 0.66 16 32 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.04 0.68 6.54 -51.93 -0.34 0.34 16 34 H 0.04 0.68 8.09 -51.93 -0.42 0.26 16 35 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 36 H 0.03 0.58 6.62 -51.93 -0.34 0.24 16 37 H 0.08 1.78 7.43 -51.92 -0.39 1.39 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.05 1.04 6.87 -51.93 -0.36 0.68 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.41 7.15 7.67 -40.82 -0.31 6.84 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.07 0.77 6.91 -51.93 -0.36 0.41 16 44 H 0.09 1.05 7.93 -51.93 -0.41 0.64 16 45 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 46 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 47 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 50 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 51 H 0.13 1.44 5.43 -52.48 -0.28 1.15 16 LS Contribution 405.36 15.07 6.11 6.11 Total: -1.00 -28.17 405.36 -9.47 -37.64 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -8.36 Total: 9.60 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -1.54 Total: -3.60 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.05 Total: -47.68 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.60 Total: -16.66 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -28.17 -9.47 -37.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156767198.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.064 kcal (2) G-P(sol) polarization free energy of solvation -28.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds