Wall clock time and date at job start Tue Mar 31 2020 19:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46742 * 2 1 4 4 C 1.36933 * 119.99962 * 84.10138 * 3 2 1 5 5 H 1.08004 * 120.00523 * 33.87339 * 4 3 2 6 6 C 1.38807 * 119.99904 * 214.15549 * 4 3 2 7 7 N 1.31618 * 120.00290 * 12.28617 * 6 4 3 8 8 Si 1.86808 * 120.00010 * 192.28278 * 6 4 3 9 9 H 1.48501 * 109.46921 * 60.00201 * 8 6 4 10 10 H 1.48500 * 109.46828 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47098 * 299.99835 * 8 6 4 12 12 C 1.46498 * 119.99935 * 264.09049 * 3 2 1 13 13 H 1.09005 * 109.46968 * 179.97438 * 12 3 2 14 14 C 1.53000 * 109.47154 * 59.93247 * 12 3 2 15 15 C 1.52998 * 109.47393 * 299.93066 * 12 3 2 16 16 N 1.46497 * 109.47068 * 305.00059 * 15 12 3 17 17 C 1.34779 * 120.00090 * 180.02562 * 16 15 12 18 18 O 1.21288 * 119.99925 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00216 * 180.02562 * 17 16 15 20 20 H 1.09001 * 109.46935 * 304.99024 * 19 17 16 21 21 C 1.52995 * 109.47431 * 64.99492 * 19 17 16 22 22 O 1.42902 * 109.47151 * 184.99791 * 19 17 16 23 23 C 1.35896 * 117.00028 * 155.17612 * 22 19 17 24 24 C 1.38758 * 120.05662 * 185.54260 * 23 22 19 25 25 C 1.38126 * 119.94555 * 180.02562 * 24 23 22 26 26 C 1.38281 * 120.05194 * 359.97438 * 25 24 23 27 27 C 1.38241 * 120.11974 * 0.04572 * 26 25 24 28 28 C 1.50696 * 119.97729 * 179.97438 * 27 26 25 29 29 C 1.38174 * 120.04957 * 359.67877 * 27 26 25 30 30 H 1.09002 * 109.46863 * 300.00034 * 1 2 3 31 31 H 1.08998 * 109.46939 * 59.99394 * 1 2 3 32 32 H 1.08992 * 109.47108 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47076 * 240.00423 * 2 1 3 34 34 H 1.08994 * 109.47141 * 120.00128 * 2 1 3 35 35 H 0.97004 * 120.00444 * 180.02562 * 7 6 4 36 36 H 1.09006 * 109.46980 * 299.99962 * 14 12 3 37 37 H 1.09010 * 109.47013 * 59.99584 * 14 12 3 38 38 H 1.08997 * 109.47234 * 179.97438 * 14 12 3 39 39 H 1.08994 * 109.46894 * 65.00446 * 15 12 3 40 40 H 1.08999 * 109.46714 * 185.00179 * 15 12 3 41 41 H 0.96996 * 120.00193 * 359.97438 * 16 15 12 42 42 H 1.09001 * 109.47443 * 59.99843 * 21 19 17 43 43 H 1.08999 * 109.47063 * 180.02562 * 21 19 17 44 44 H 1.08999 * 109.47130 * 300.00091 * 21 19 17 45 45 H 1.08005 * 120.02245 * 359.97438 * 24 23 22 46 46 H 1.07999 * 119.97074 * 180.02562 * 25 24 23 47 47 H 1.08011 * 119.94008 * 180.02562 * 26 25 24 48 48 H 1.09005 * 109.47122 * 89.99901 * 28 27 26 49 49 H 1.09005 * 109.47272 * 210.00018 * 28 27 26 50 50 H 1.09001 * 109.47027 * 330.00112 * 28 27 26 51 51 H 1.08003 * 120.02586 * 180.30262 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1316 2.0674 1.1796 5 1 2.4034 1.5445 2.0847 6 6 1.8913 3.4341 1.2133 7 7 1.3256 4.0285 0.1843 8 14 2.3708 4.4299 2.7194 9 1 3.8348 4.3174 2.9416 10 1 2.0111 5.8547 2.5058 11 1 1.6483 3.9092 3.9077 12 6 2.3856 2.0284 -1.2620 13 1 2.7230 3.0458 -1.0639 14 6 1.1691 2.0649 -2.1893 15 6 3.5130 1.2392 -1.9306 16 7 4.6334 1.1020 -0.9968 17 6 5.7457 0.4395 -1.3715 18 8 5.8188 -0.0436 -2.4816 19 6 6.8980 0.2978 -0.4107 20 1 7.2045 1.2844 -0.0630 21 6 6.4637 -0.5522 0.7849 22 8 7.9947 -0.3359 -1.0724 23 6 9.2372 -0.0920 -0.5789 24 6 10.3555 -0.5801 -1.2396 25 6 11.6173 -0.3314 -0.7358 26 6 11.7666 0.4039 0.4258 27 6 10.6541 0.8910 1.0862 28 6 10.8204 1.6914 2.3522 29 6 9.3900 0.6497 0.5832 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.1580 4.9837 0.2077 36 1 0.8325 1.0473 -2.3873 37 1 0.3659 2.6272 -1.7129 38 1 1.4423 2.5468 -3.1280 39 1 3.1488 0.2504 -2.2090 40 1 3.8467 1.7681 -2.8233 41 1 4.5751 1.4886 -0.1091 42 1 6.1572 -1.5387 0.4372 43 1 7.2971 -0.6542 1.4800 44 1 5.6272 -0.0688 1.2896 45 1 10.2393 -1.1548 -2.1467 46 1 12.4880 -0.7107 -1.2499 47 1 12.7541 0.5977 0.8180 48 1 10.9107 2.7490 2.1041 49 1 9.9520 1.5415 2.9936 50 1 11.7190 1.3628 2.8744 51 1 8.5214 1.0346 1.0968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156767198.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:33 Heat of formation + Delta-G solvation = -50.858116 kcal Electronic energy + Delta-G solvation = -29730.882672 eV Core-core repulsion = 25823.482570 eV Total energy + Delta-G solvation = -3907.400102 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.68365 -40.46291 -38.81830 -38.26134 -35.42859 -33.99943 -33.69320 -32.96966 -31.93412 -30.86792 -30.08369 -27.80697 -27.32864 -25.86981 -25.28040 -23.37257 -23.19707 -22.42673 -21.23169 -20.90766 -19.01953 -18.89888 -18.20418 -17.23282 -16.89455 -16.66969 -16.66825 -16.26188 -16.19801 -15.58423 -15.29888 -15.19927 -14.88589 -14.49338 -14.37560 -14.23838 -14.03391 -13.98820 -13.63239 -13.43811 -13.33237 -13.21007 -13.06122 -12.96304 -12.92556 -12.81948 -12.67696 -12.56857 -12.33929 -12.19113 -12.09679 -11.94302 -11.76969 -11.72199 -11.27911 -11.26264 -10.83479 -10.42842 -10.00424 -9.76476 -9.14652 -8.49584 -7.77904 -5.30165 0.36648 0.46639 1.50780 1.53418 1.56552 1.60648 1.63299 2.56852 2.65817 2.79655 3.38497 3.52685 3.66749 3.74659 3.83379 3.86124 3.96722 4.17384 4.25622 4.36936 4.43350 4.48198 4.54279 4.57976 4.61064 4.73568 4.74298 4.80600 4.84040 4.86125 4.90308 4.93305 4.94056 5.02073 5.07050 5.10138 5.18710 5.28211 5.35712 5.36136 5.46158 5.49990 5.63155 5.65388 5.75839 5.79004 5.86559 5.90838 6.36664 6.53871 6.61844 7.18583 7.28436 7.95025 8.47841 9.26029 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012692 B = 0.003189 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.507238 B = 8777.458561 C =10147.129184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.142 3.858 3 N -0.589 5.589 4 C -0.260 4.260 5 H 0.066 0.934 6 C -0.030 4.030 7 N -0.916 5.916 8 Si 0.952 3.048 9 H -0.272 1.272 10 H -0.304 1.304 11 H -0.285 1.285 12 C 0.183 3.817 13 H 0.078 0.922 14 C -0.132 4.132 15 C 0.113 3.887 16 N -0.691 5.691 17 C 0.510 3.490 18 O -0.578 6.578 19 C 0.073 3.927 20 H 0.112 0.888 21 C -0.165 4.165 22 O -0.311 6.311 23 C 0.111 3.889 24 C -0.178 4.178 25 C -0.075 4.075 26 C -0.163 4.163 27 C -0.053 4.053 28 C -0.116 4.116 29 C -0.223 4.223 30 H 0.029 0.971 31 H 0.040 0.960 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.041 0.959 35 H 0.247 0.753 36 H 0.041 0.959 37 H 0.048 0.952 38 H 0.044 0.956 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.414 0.586 42 H 0.063 0.937 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.127 0.873 46 H 0.155 0.845 47 H 0.149 0.851 48 H 0.079 0.921 49 H 0.070 0.930 50 H 0.084 0.916 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.154 -6.038 3.099 18.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.016 3.984 3 N -0.311 5.311 4 C -0.390 4.390 5 H 0.083 0.917 6 C -0.228 4.228 7 N -0.560 5.560 8 Si 0.781 3.219 9 H -0.197 1.197 10 H -0.231 1.231 11 H -0.212 1.212 12 C 0.076 3.924 13 H 0.096 0.904 14 C -0.192 4.192 15 C -0.012 4.012 16 N -0.342 5.342 17 C 0.296 3.704 18 O -0.458 6.458 19 C 0.014 3.986 20 H 0.130 0.870 21 C -0.223 4.223 22 O -0.225 6.225 23 C 0.066 3.934 24 C -0.196 4.196 25 C -0.093 4.093 26 C -0.181 4.181 27 C -0.053 4.053 28 C -0.173 4.173 29 C -0.241 4.241 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.251 0.749 42 H 0.082 0.918 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.145 0.855 46 H 0.173 0.827 47 H 0.167 0.833 48 H 0.097 0.903 49 H 0.089 0.911 50 H 0.103 0.897 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 17.077 -6.332 2.149 18.340 hybrid contribution -0.649 1.047 0.899 1.525 sum 16.429 -5.285 3.048 17.525 Atomic orbital electron populations 1.22257 0.99218 0.99687 1.00457 1.20870 0.92290 0.86537 0.98693 1.44031 1.74106 1.10360 1.02598 1.19285 1.40237 0.90721 0.88756 0.91660 1.25735 0.98730 0.99356 0.98952 1.70082 1.44777 1.09493 1.31688 0.85606 0.78564 0.77288 0.80423 1.19725 1.23101 1.21169 1.20369 0.90677 0.96215 0.85167 0.90412 1.21942 0.99530 0.99670 0.98019 1.21947 0.87212 1.00277 0.91801 1.45754 1.14688 1.54716 1.19078 1.20531 0.84074 0.78189 0.87611 1.90665 1.82143 1.49630 1.23352 1.22201 0.84838 0.99433 0.92155 0.87016 1.22269 1.03875 1.00461 0.95662 1.86163 1.12833 1.67515 1.55950 1.19375 0.84305 0.96152 0.93555 1.20677 0.90927 1.05755 1.02278 1.21269 0.96177 0.96278 0.95577 1.21315 0.99280 1.00830 0.96685 1.20089 0.92034 0.96166 0.97055 1.20891 1.03776 0.99415 0.93209 1.21380 0.99520 1.05267 0.97968 0.95147 0.94106 0.92512 0.93609 0.94048 0.94357 0.93952 0.93275 0.93686 0.93004 0.92781 0.74859 0.91783 0.89196 0.88932 0.85505 0.82706 0.83339 0.90260 0.91072 0.89670 0.84506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.76 10.01 71.98 0.72 -5.04 16 2 C 0.14 5.35 5.62 86.38 0.49 5.83 16 3 N -0.59 -25.02 1.85 -678.03 -1.26 -26.28 16 4 C -0.26 -12.14 9.27 84.03 0.78 -11.36 16 5 H 0.07 3.00 7.86 -2.91 -0.02 2.98 16 6 C -0.03 -1.48 4.98 84.86 0.42 -1.06 16 7 N -0.92 -47.67 10.37 21.65 0.22 -47.44 16 8 Si 0.95 40.19 29.57 68.60 2.03 42.21 16 9 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 10 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 11 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 12 C 0.18 7.59 1.91 44.99 0.09 7.67 16 13 H 0.08 3.72 5.93 -2.38 -0.01 3.71 16 14 C -0.13 -5.30 8.10 71.98 0.58 -4.72 16 15 C 0.11 4.25 4.94 86.38 0.43 4.68 16 16 N -0.69 -24.14 5.35 -463.07 -2.48 -26.61 16 17 C 0.51 18.20 7.18 87.66 0.63 18.83 16 18 O -0.58 -25.22 16.51 15.93 0.26 -24.95 16 19 C 0.07 2.09 2.64 29.85 0.08 2.17 16 20 H 0.11 2.77 6.31 -2.39 -0.02 2.75 16 21 C -0.17 -3.90 9.12 71.98 0.66 -3.25 16 22 O -0.31 -9.95 9.34 -73.39 -0.69 -10.63 16 23 C 0.11 3.00 6.60 22.51 0.15 3.14 16 24 C -0.18 -4.25 9.99 22.37 0.22 -4.03 16 25 C -0.08 -1.35 10.04 22.25 0.22 -1.13 16 26 C -0.16 -2.72 9.70 22.28 0.22 -2.50 16 27 C -0.05 -0.99 5.88 -19.88 -0.12 -1.11 16 28 C -0.12 -1.52 10.01 71.23 0.71 -0.81 16 29 C -0.22 -5.04 7.89 22.37 0.18 -4.86 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16 31 H 0.04 1.55 6.10 -2.39 -0.01 1.54 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 33 H 0.05 1.65 6.54 -2.39 -0.02 1.63 16 34 H 0.04 1.52 8.09 -2.39 -0.02 1.50 16 35 H 0.25 12.87 8.31 -92.70 -0.77 12.10 16 36 H 0.04 1.56 6.62 -2.38 -0.02 1.55 16 37 H 0.05 2.26 7.43 -2.38 -0.02 2.24 16 38 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.05 1.98 6.87 -2.39 -0.02 1.96 16 40 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.41 14.15 7.67 -92.71 -0.71 13.44 16 42 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 43 H 0.09 1.79 6.91 -2.39 -0.02 1.77 16 44 H 0.09 2.07 7.93 -2.39 -0.02 2.06 16 45 H 0.13 2.97 8.06 -2.91 -0.02 2.94 16 46 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 47 H 0.15 1.61 8.06 -2.90 -0.02 1.59 16 48 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 49 H 0.07 0.90 8.09 -2.38 -0.02 0.88 16 50 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 51 H 0.14 2.79 5.43 -2.91 -0.02 2.77 16 Total: -1.00 -61.10 405.36 4.76 -56.34 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: 0.21 Total: 34.89 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 6.45 Total: 2.47 kcal Atomic # 7 Polarization: -96.82 SS G_CDS: -3.51 Total: -100.33 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -0.42 Total: -35.58 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.21 kcal Total: -61.10 4.76 -56.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156767198.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.483 kcal (2) G-P(sol) polarization free energy of solvation -61.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds