Wall clock time and date at job start Tue Mar 31 2020 19:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46760 * 2 1 4 4 C 1.36938 * 120.00492 * 275.73222 * 3 2 1 5 5 H 1.08000 * 119.99573 * 33.27307 * 4 3 2 6 6 C 1.38812 * 120.00163 * 213.27174 * 4 3 2 7 7 N 1.31625 * 119.99983 * 17.27046 * 6 4 3 8 8 Si 1.86800 * 119.99932 * 197.26685 * 6 4 3 9 9 H 1.48500 * 109.46800 * 90.00397 * 8 6 4 10 10 H 1.48501 * 109.47132 * 210.00430 * 8 6 4 11 11 H 1.48503 * 109.47275 * 330.00343 * 8 6 4 12 12 C 1.46502 * 119.99840 * 95.73740 * 3 2 1 13 13 H 1.08996 * 109.47659 * 180.08241 * 12 3 2 14 14 C 1.53003 * 109.47447 * 60.07757 * 12 3 2 15 15 C 1.53003 * 109.47192 * 300.07988 * 12 3 2 16 16 N 1.46497 * 109.46981 * 304.99903 * 15 12 3 17 17 C 1.34781 * 120.00231 * 179.97438 * 16 15 12 18 18 O 1.21282 * 119.99494 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00119 * 179.97438 * 17 16 15 20 20 O 1.42901 * 109.46978 * 180.02562 * 19 17 16 21 21 C 1.35904 * 116.99905 * 180.02562 * 20 19 17 22 22 C 1.38734 * 120.05251 * 270.27415 * 21 20 19 23 23 C 1.50699 * 120.02906 * 359.97438 * 22 21 20 24 24 C 1.38145 * 119.94240 * 180.25298 * 22 21 20 25 25 C 1.38270 * 120.05322 * 359.45055 * 24 22 21 26 26 C 1.38264 * 120.11177 * 0.29293 * 25 24 22 27 27 C 1.38142 * 120.05823 * 359.97438 * 26 25 24 28 28 C 1.50699 * 120.02924 * 180.02562 * 27 26 25 29 29 H 1.08999 * 109.47344 * 299.99549 * 1 2 3 30 30 H 1.08998 * 109.47247 * 59.99343 * 1 2 3 31 31 H 1.08997 * 109.47128 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46841 * 240.00591 * 2 1 3 33 33 H 1.08997 * 109.47268 * 120.00104 * 2 1 3 34 34 H 0.96993 * 119.99552 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.46689 * 59.99759 * 14 12 3 36 36 H 1.08998 * 109.47793 * 180.02562 * 14 12 3 37 37 H 1.09002 * 109.47164 * 300.00397 * 14 12 3 38 38 H 1.08996 * 109.47394 * 185.00007 * 15 12 3 39 39 H 1.09004 * 109.47235 * 64.99547 * 15 12 3 40 40 H 0.97002 * 119.99885 * 0.02562 * 16 15 12 41 41 H 1.09004 * 109.46716 * 60.00301 * 19 17 16 42 42 H 1.08996 * 109.47474 * 300.00394 * 19 17 16 43 43 H 1.09000 * 109.47335 * 270.25575 * 23 22 21 44 44 H 1.08999 * 109.47146 * 30.25853 * 23 22 21 45 45 H 1.09003 * 109.46777 * 150.25363 * 23 22 21 46 46 H 1.07996 * 119.97280 * 179.72574 * 24 22 21 47 47 H 1.07995 * 119.94094 * 180.27413 * 25 24 22 48 48 H 1.08000 * 119.96520 * 179.97438 * 26 25 24 49 49 H 1.08998 * 109.47152 * 89.99906 * 28 27 26 50 50 H 1.09000 * 109.46821 * 210.00203 * 28 27 26 51 51 H 1.09006 * 109.46862 * 329.99687 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1348 2.0663 -1.1799 5 1 1.4368 1.8812 -1.9830 6 6 3.1500 2.9988 -1.3438 7 7 4.1870 2.9919 -0.5332 8 14 3.0443 4.2633 -2.7146 9 1 2.3486 5.4768 -2.2160 10 1 4.4137 4.6257 -3.1604 11 1 2.2867 3.6927 -3.8572 12 6 2.3820 2.0296 1.2624 13 1 2.7190 3.0471 1.0645 14 6 3.5077 1.2412 1.9349 15 6 1.1630 2.0668 2.1864 16 7 0.0467 2.7174 1.4960 17 6 -1.1389 2.8632 2.1202 18 8 -1.2814 2.4560 3.2537 19 6 -2.2871 3.5330 1.4102 20 8 -3.4256 3.5676 2.2731 21 6 -4.5548 4.1426 1.7818 22 6 -4.7732 5.5019 1.9528 23 6 -3.7587 6.3427 2.6842 24 6 -5.9243 6.0831 1.4571 25 6 -6.8529 5.3132 0.7811 26 6 -6.6349 3.9593 0.6047 27 6 -5.4881 3.3724 1.1033 28 6 -5.2509 1.8967 0.9103 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 4.8965 3.6432 -0.6480 35 1 4.3760 1.2146 1.2767 36 1 3.7780 1.7232 2.8744 37 1 3.1706 0.2237 2.1329 38 1 1.4080 2.6268 3.0888 39 1 0.8800 1.0492 2.4558 40 1 0.1606 3.0427 0.5892 41 1 -2.5319 2.9735 0.5073 42 1 -2.0041 4.5507 1.1415 43 1 -3.9943 6.3525 3.7484 44 1 -2.7640 5.9224 2.5361 45 1 -3.7841 7.3613 2.2970 46 1 -6.0969 7.1403 1.5938 47 1 -7.7500 5.7703 0.3904 48 1 -7.3620 3.3602 0.0767 49 1 -4.7096 1.7346 -0.0218 50 1 -4.6634 1.5111 1.7435 51 1 -6.2083 1.3772 0.8696 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156767290.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:45 Heat of formation + Delta-G solvation = -37.622745 kcal Electronic energy + Delta-G solvation = -29979.328750 eV Core-core repulsion = 26072.502576 eV Total energy + Delta-G solvation = -3906.826173 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.44495 -39.17923 -37.34750 -36.67841 -33.74020 -33.67065 -31.92196 -31.42898 -31.11389 -28.88127 -28.15086 -26.82116 -26.78903 -24.84531 -23.96611 -21.96330 -21.70757 -21.04087 -20.06195 -19.28819 -17.87165 -17.19465 -16.77139 -16.56017 -15.80712 -15.26169 -15.14303 -14.95945 -14.41428 -14.37857 -14.12157 -13.70164 -13.40038 -13.29994 -13.18437 -13.13624 -12.82575 -12.73312 -12.64464 -12.33663 -12.08312 -12.04385 -11.86205 -11.69949 -11.56181 -11.39920 -11.33054 -11.10066 -10.98340 -10.85610 -10.70518 -10.32876 -10.11189 -9.95905 -9.66910 -9.47127 -9.39250 -8.76202 -8.65832 -8.56082 -8.43722 -6.71187 -5.92358 -3.41344 1.00833 1.15102 2.97782 3.00539 3.27108 3.36383 3.37161 3.56306 4.20827 4.38031 4.60795 4.64941 4.77677 5.06754 5.07349 5.16189 5.18434 5.22595 5.27074 5.34239 5.37334 5.42840 5.52021 5.55559 5.63889 5.66247 5.87451 5.97182 6.02547 6.12677 6.15673 6.23163 6.26570 6.28452 6.35374 6.42222 6.45768 6.52277 6.59308 6.59699 6.65610 6.80922 6.88292 7.01597 7.13097 7.42910 7.46681 7.55072 7.73305 8.08425 8.39089 8.67447 9.12067 9.73378 10.30681 11.14187 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012723 B = 0.003189 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.234634 B = 8779.064438 C = 9376.937851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.140 3.860 3 N -0.583 5.583 4 C -0.265 4.265 5 H 0.064 0.936 6 C 0.013 3.987 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.287 1.287 10 H -0.291 1.291 11 H -0.279 1.279 12 C 0.177 3.823 13 H 0.100 0.900 14 C -0.144 4.144 15 C 0.105 3.895 16 N -0.698 5.698 17 C 0.508 3.492 18 O -0.537 6.537 19 C 0.047 3.953 20 O -0.305 6.305 21 C 0.092 3.908 22 C -0.095 4.095 23 C -0.113 4.113 24 C -0.118 4.118 25 C -0.118 4.118 26 C -0.117 4.117 27 C -0.094 4.094 28 C -0.117 4.117 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.033 0.967 32 H 0.040 0.960 33 H 0.037 0.963 34 H 0.255 0.745 35 H 0.078 0.922 36 H 0.033 0.967 37 H 0.030 0.970 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.411 0.589 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.125 0.875 47 H 0.123 0.877 48 H 0.125 0.875 49 H 0.070 0.930 50 H 0.077 0.923 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.687 3.670 2.347 17.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.394 4.394 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.214 1.214 10 H -0.217 1.217 11 H -0.204 1.204 12 C 0.069 3.931 13 H 0.118 0.882 14 C -0.204 4.204 15 C -0.021 4.021 16 N -0.351 5.351 17 C 0.292 3.708 18 O -0.415 6.415 19 C -0.030 4.030 20 O -0.221 6.221 21 C 0.048 3.952 22 C -0.096 4.096 23 C -0.169 4.169 24 C -0.136 4.136 25 C -0.136 4.136 26 C -0.135 4.135 27 C -0.094 4.094 28 C -0.174 4.174 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.248 0.752 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.143 0.857 47 H 0.141 0.859 48 H 0.143 0.857 49 H 0.089 0.911 50 H 0.096 0.904 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.559 3.383 3.323 17.224 hybrid contribution 0.010 0.938 -1.428 1.709 sum -16.548 4.321 1.894 17.208 Atomic orbital electron populations 1.22452 1.00081 0.99061 1.01427 1.20752 0.91654 0.87430 0.98756 1.43897 1.75989 1.08289 1.02270 1.19100 1.08658 1.18237 0.93419 0.91818 1.25157 0.94501 1.01321 0.97795 1.70005 1.07816 1.35851 1.39554 0.86402 0.77003 0.81897 0.82097 1.21384 1.21749 1.20408 1.20502 0.88851 0.99558 0.84173 0.88217 1.22023 1.01105 0.97982 0.99267 1.22193 0.87802 0.96279 0.95795 1.45847 1.10545 1.59502 1.19194 1.19975 0.83613 0.80332 0.86849 1.90693 1.82927 1.49616 1.18219 1.22459 0.85691 1.01488 0.93391 1.86100 1.17816 1.79008 1.39201 1.18419 0.88351 0.90319 0.98119 1.20274 0.97020 0.93164 0.99105 1.20729 0.97741 0.98403 1.00046 1.20920 0.93601 0.99951 0.99094 1.21134 0.99288 0.94000 0.99218 1.20931 0.96994 0.95029 1.00595 1.20276 0.95163 0.96986 0.97017 1.20760 1.02598 0.90967 1.03040 0.92981 0.93512 0.94815 0.94113 0.94482 0.93512 0.90259 0.94799 0.95121 0.92840 0.92722 0.75219 0.90034 0.90165 0.90733 0.91237 0.91511 0.85729 0.85867 0.85718 0.91097 0.90433 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 9.87 37.16 0.37 -2.62 16 2 C 0.14 2.77 5.67 -4.04 -0.02 2.74 16 3 N -0.58 -12.72 1.85 -165.66 -0.31 -13.03 16 4 C -0.26 -6.38 9.26 -15.06 -0.14 -6.52 16 5 H 0.06 1.55 7.89 -52.49 -0.41 1.13 16 6 C 0.01 0.31 4.85 -17.43 -0.08 0.23 16 7 N -0.89 -23.13 10.61 55.49 0.59 -22.54 16 8 Si 0.90 19.85 29.59 -169.99 -5.03 14.82 16 9 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 C 0.18 3.68 1.92 -67.93 -0.13 3.55 16 13 H 0.10 2.37 6.04 -51.93 -0.31 2.05 16 14 C -0.14 -2.90 9.05 37.16 0.34 -2.57 16 15 C 0.10 1.97 4.34 -4.04 -0.02 1.95 16 16 N -0.70 -12.29 3.99 -60.29 -0.24 -12.53 16 17 C 0.51 8.91 7.67 -10.99 -0.08 8.83 16 18 O -0.54 -11.35 16.50 -14.35 -0.24 -11.59 16 19 C 0.05 0.68 6.17 36.00 0.22 0.90 16 20 O -0.31 -4.73 7.86 -39.35 -0.31 -5.04 16 21 C 0.09 1.24 5.67 -39.22 -0.22 1.01 16 22 C -0.10 -1.14 5.89 -104.47 -0.62 -1.75 16 23 C -0.11 -1.22 9.79 36.01 0.35 -0.86 16 24 C -0.12 -1.17 9.70 -39.60 -0.38 -1.56 16 25 C -0.12 -1.10 10.04 -39.56 -0.40 -1.50 16 26 C -0.12 -1.17 9.70 -39.61 -0.38 -1.56 16 27 C -0.09 -1.12 5.89 -104.47 -0.62 -1.74 16 28 C -0.12 -1.28 9.79 36.01 0.35 -0.92 16 29 H 0.05 0.94 4.99 -51.93 -0.26 0.68 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 33 H 0.04 0.71 6.45 -51.93 -0.33 0.37 16 34 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 35 H 0.08 1.81 7.40 -51.93 -0.38 1.43 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.03 0.57 6.67 -51.93 -0.35 0.22 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 1.06 7.05 -51.93 -0.37 0.70 16 40 H 0.41 7.27 7.90 -40.82 -0.32 6.95 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.08 1.02 7.23 -51.93 -0.38 0.64 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.83 6.30 -51.93 -0.33 0.50 16 45 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 46 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 48 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 50 H 0.08 0.98 7.53 -51.93 -0.39 0.59 16 51 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 LS Contribution 406.15 15.07 6.12 6.12 Total: -1.00 -28.46 406.15 -9.34 -37.80 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -8.46 Total: 8.35 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -1.47 Total: -2.37 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: 0.04 Total: -48.10 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.55 Total: -16.62 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.82 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -28.46 -9.34 -37.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156767290.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.177 kcal (2) G-P(sol) polarization free energy of solvation -28.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds