Wall clock time and date at job start Tue Mar 31 2020 19:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46760 * 2 1 4 4 C 1.36938 * 120.00492 * 275.73222 * 3 2 1 5 5 H 1.08000 * 119.99573 * 33.27307 * 4 3 2 6 6 C 1.38812 * 120.00163 * 213.27174 * 4 3 2 7 7 N 1.31625 * 119.99983 * 17.27046 * 6 4 3 8 8 Si 1.86800 * 119.99932 * 197.26685 * 6 4 3 9 9 H 1.48500 * 109.46800 * 90.00397 * 8 6 4 10 10 H 1.48501 * 109.47132 * 210.00430 * 8 6 4 11 11 H 1.48503 * 109.47275 * 330.00343 * 8 6 4 12 12 C 1.46502 * 119.99840 * 95.73740 * 3 2 1 13 13 H 1.08996 * 109.47659 * 180.08241 * 12 3 2 14 14 C 1.53003 * 109.47447 * 60.07757 * 12 3 2 15 15 C 1.53003 * 109.47192 * 300.07988 * 12 3 2 16 16 N 1.46497 * 109.46981 * 304.99903 * 15 12 3 17 17 C 1.34781 * 120.00231 * 179.97438 * 16 15 12 18 18 O 1.21282 * 119.99494 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00119 * 179.97438 * 17 16 15 20 20 O 1.42901 * 109.46978 * 180.02562 * 19 17 16 21 21 C 1.35904 * 116.99905 * 180.02562 * 20 19 17 22 22 C 1.38734 * 120.05251 * 270.27415 * 21 20 19 23 23 C 1.50699 * 120.02906 * 359.97438 * 22 21 20 24 24 C 1.38145 * 119.94240 * 180.25298 * 22 21 20 25 25 C 1.38270 * 120.05322 * 359.45055 * 24 22 21 26 26 C 1.38264 * 120.11177 * 0.29293 * 25 24 22 27 27 C 1.38142 * 120.05823 * 359.97438 * 26 25 24 28 28 C 1.50699 * 120.02924 * 180.02562 * 27 26 25 29 29 H 1.08999 * 109.47344 * 299.99549 * 1 2 3 30 30 H 1.08998 * 109.47247 * 59.99343 * 1 2 3 31 31 H 1.08997 * 109.47128 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46841 * 240.00591 * 2 1 3 33 33 H 1.08997 * 109.47268 * 120.00104 * 2 1 3 34 34 H 0.96993 * 119.99552 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.46689 * 59.99759 * 14 12 3 36 36 H 1.08998 * 109.47793 * 180.02562 * 14 12 3 37 37 H 1.09002 * 109.47164 * 300.00397 * 14 12 3 38 38 H 1.08996 * 109.47394 * 185.00007 * 15 12 3 39 39 H 1.09004 * 109.47235 * 64.99547 * 15 12 3 40 40 H 0.97002 * 119.99885 * 0.02562 * 16 15 12 41 41 H 1.09004 * 109.46716 * 60.00301 * 19 17 16 42 42 H 1.08996 * 109.47474 * 300.00394 * 19 17 16 43 43 H 1.09000 * 109.47335 * 270.25575 * 23 22 21 44 44 H 1.08999 * 109.47146 * 30.25853 * 23 22 21 45 45 H 1.09003 * 109.46777 * 150.25363 * 23 22 21 46 46 H 1.07996 * 119.97280 * 179.72574 * 24 22 21 47 47 H 1.07995 * 119.94094 * 180.27413 * 25 24 22 48 48 H 1.08000 * 119.96520 * 179.97438 * 26 25 24 49 49 H 1.08998 * 109.47152 * 89.99906 * 28 27 26 50 50 H 1.09000 * 109.46821 * 210.00203 * 28 27 26 51 51 H 1.09006 * 109.46862 * 329.99687 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1348 2.0663 -1.1799 5 1 1.4368 1.8812 -1.9830 6 6 3.1500 2.9988 -1.3438 7 7 4.1870 2.9919 -0.5332 8 14 3.0443 4.2633 -2.7146 9 1 2.3486 5.4768 -2.2160 10 1 4.4137 4.6257 -3.1604 11 1 2.2867 3.6927 -3.8572 12 6 2.3820 2.0296 1.2624 13 1 2.7190 3.0471 1.0645 14 6 3.5077 1.2412 1.9349 15 6 1.1630 2.0668 2.1864 16 7 0.0467 2.7174 1.4960 17 6 -1.1389 2.8632 2.1202 18 8 -1.2814 2.4560 3.2537 19 6 -2.2871 3.5330 1.4102 20 8 -3.4256 3.5676 2.2731 21 6 -4.5548 4.1426 1.7818 22 6 -4.7732 5.5019 1.9528 23 6 -3.7587 6.3427 2.6842 24 6 -5.9243 6.0831 1.4571 25 6 -6.8529 5.3132 0.7811 26 6 -6.6349 3.9593 0.6047 27 6 -5.4881 3.3724 1.1033 28 6 -5.2509 1.8967 0.9103 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 4.8965 3.6432 -0.6480 35 1 4.3760 1.2146 1.2767 36 1 3.7780 1.7232 2.8744 37 1 3.1706 0.2237 2.1329 38 1 1.4080 2.6268 3.0888 39 1 0.8800 1.0492 2.4558 40 1 0.1606 3.0427 0.5892 41 1 -2.5319 2.9735 0.5073 42 1 -2.0041 4.5507 1.1415 43 1 -3.9943 6.3525 3.7484 44 1 -2.7640 5.9224 2.5361 45 1 -3.7841 7.3613 2.2970 46 1 -6.0969 7.1403 1.5938 47 1 -7.7500 5.7703 0.3904 48 1 -7.3620 3.3602 0.0767 49 1 -4.7096 1.7346 -0.0218 50 1 -4.6634 1.5111 1.7435 51 1 -6.2083 1.3772 0.8696 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156767290.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:44 Heat of formation + Delta-G solvation = -50.371834 kcal Electronic energy + Delta-G solvation = -29979.881592 eV Core-core repulsion = 26072.502576 eV Total energy + Delta-G solvation = -3907.379015 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.43541 -40.52181 -38.70748 -37.97851 -35.25802 -34.54726 -33.71660 -32.83049 -32.13773 -30.17149 -29.75246 -27.82045 -27.56219 -26.28599 -25.76066 -23.35552 -22.76058 -21.85345 -21.48312 -20.99286 -18.87370 -18.82182 -18.12035 -17.67194 -17.02144 -16.71384 -16.48075 -16.19008 -15.91407 -15.73084 -15.17478 -14.94170 -14.63086 -14.57951 -14.31304 -14.08344 -13.98865 -13.89121 -13.80809 -13.66093 -13.60916 -13.48699 -13.16397 -12.87562 -12.78197 -12.71646 -12.54319 -12.49422 -12.38249 -12.30219 -12.13509 -12.04165 -11.85787 -11.34931 -11.16551 -10.95473 -10.86213 -10.42219 -9.95818 -9.54887 -9.50550 -8.52251 -7.80955 -5.31283 0.16844 0.36234 1.50486 1.55198 1.57679 1.60622 1.86138 2.55363 2.64414 3.10868 3.33496 3.64938 3.77983 3.81473 3.87102 4.05098 4.09640 4.09921 4.25353 4.37845 4.45388 4.46784 4.53218 4.57341 4.60511 4.68919 4.70634 4.74012 4.81409 4.84690 4.88906 4.90948 4.94384 4.98128 5.07465 5.15289 5.23418 5.30280 5.33480 5.47983 5.50488 5.50914 5.59528 5.60633 5.70765 5.76954 5.83081 5.88611 6.46174 6.51659 6.66230 7.23023 7.27008 7.93586 8.46324 9.23055 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012723 B = 0.003189 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.234634 B = 8779.064438 C = 9376.937851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.139 3.861 3 N -0.591 5.591 4 C -0.262 4.262 5 H 0.063 0.937 6 C -0.030 4.030 7 N -0.915 5.915 8 Si 0.951 3.049 9 H -0.284 1.284 10 H -0.304 1.304 11 H -0.274 1.274 12 C 0.184 3.816 13 H 0.072 0.928 14 C -0.136 4.136 15 C 0.117 3.883 16 N -0.694 5.694 17 C 0.511 3.489 18 O -0.575 6.575 19 C 0.055 3.945 20 O -0.326 6.326 21 C 0.059 3.941 22 C -0.110 4.110 23 C -0.111 4.111 24 C -0.119 4.119 25 C -0.113 4.113 26 C -0.119 4.119 27 C -0.109 4.109 28 C -0.114 4.114 29 H 0.045 0.955 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.248 0.752 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.042 0.958 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.412 0.588 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.051 0.949 45 H 0.087 0.913 46 H 0.149 0.851 47 H 0.155 0.845 48 H 0.149 0.851 49 H 0.075 0.925 50 H 0.052 0.948 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.284 4.350 1.398 19.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.013 3.987 3 N -0.313 5.313 4 C -0.392 4.392 5 H 0.080 0.920 6 C -0.227 4.227 7 N -0.559 5.559 8 Si 0.781 3.219 9 H -0.210 1.210 10 H -0.231 1.231 11 H -0.199 1.199 12 C 0.076 3.924 13 H 0.090 0.910 14 C -0.195 4.195 15 C -0.008 4.008 16 N -0.346 5.346 17 C 0.297 3.703 18 O -0.455 6.455 19 C -0.023 4.023 20 O -0.243 6.243 21 C 0.016 3.984 22 C -0.111 4.111 23 C -0.168 4.168 24 C -0.137 4.137 25 C -0.131 4.131 26 C -0.137 4.137 27 C -0.110 4.110 28 C -0.170 4.170 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.249 0.751 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.090 0.910 44 H 0.070 0.930 45 H 0.106 0.894 46 H 0.167 0.833 47 H 0.173 0.827 48 H 0.167 0.833 49 H 0.093 0.907 50 H 0.071 0.929 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.180 4.054 2.359 19.745 hybrid contribution 0.751 0.701 -1.133 1.529 sum -18.429 4.756 1.227 19.072 Atomic orbital electron populations 1.22262 0.98059 1.00307 1.00895 1.20830 0.93066 0.86219 0.98560 1.44016 1.76134 1.09155 1.02015 1.19264 1.08004 1.17986 0.93953 0.91958 1.25699 0.94456 1.02941 0.99642 1.70139 1.08351 1.36335 1.41037 0.85534 0.76082 0.80148 0.80176 1.21037 1.23074 1.19854 1.20337 0.89734 0.98035 0.84271 0.91021 1.21894 0.99653 0.98794 0.99196 1.21921 0.87383 0.96275 0.95256 1.45782 1.10472 1.59240 1.19058 1.20462 0.84006 0.79471 0.86315 1.90669 1.83557 1.51331 1.19978 1.22373 0.84724 1.02073 0.93084 1.86073 1.18562 1.79614 1.40023 1.18732 0.88146 0.91341 1.00167 1.20477 0.98134 0.92811 0.99646 1.20729 0.96646 0.99369 1.00053 1.21255 0.92840 1.01294 0.98340 1.21552 0.99911 0.93704 0.97934 1.21262 0.96574 0.95795 1.00074 1.20476 0.95759 0.97298 0.97423 1.20730 1.03293 0.90854 1.02130 0.93624 0.93799 0.92696 0.95041 0.93926 0.94248 0.93214 0.93217 0.93942 0.92806 0.92982 0.75108 0.88570 0.88572 0.90953 0.92976 0.89384 0.83318 0.82736 0.83301 0.90684 0.92890 0.89438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.23 9.87 71.98 0.71 -4.52 16 2 C 0.14 5.36 5.67 86.38 0.49 5.85 16 3 N -0.59 -25.73 1.85 -678.03 -1.25 -26.99 16 4 C -0.26 -12.58 9.26 84.03 0.78 -11.80 16 5 H 0.06 2.98 7.89 -2.91 -0.02 2.96 16 6 C -0.03 -1.48 4.85 84.86 0.41 -1.07 16 7 N -0.91 -48.36 10.61 21.65 0.23 -48.13 16 8 Si 0.95 40.90 29.59 68.60 2.03 42.93 16 9 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 10 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 11 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 12 C 0.18 7.70 1.92 44.99 0.09 7.78 16 13 H 0.07 3.46 6.04 -2.39 -0.01 3.45 16 14 C -0.14 -5.48 9.05 71.98 0.65 -4.83 16 15 C 0.12 4.41 4.34 86.38 0.37 4.78 16 16 N -0.69 -24.32 3.99 -463.06 -1.85 -26.17 16 17 C 0.51 17.98 7.67 87.66 0.67 18.66 16 18 O -0.58 -24.66 16.50 16.00 0.26 -24.39 16 19 C 0.05 1.56 6.17 71.23 0.44 2.00 16 20 O -0.33 -10.19 7.86 -73.43 -0.58 -10.77 16 21 C 0.06 1.57 5.67 22.51 0.13 1.70 16 22 C -0.11 -2.49 5.89 -19.77 -0.12 -2.61 16 23 C -0.11 -2.32 9.79 71.24 0.70 -1.63 16 24 C -0.12 -2.06 9.70 22.26 0.22 -1.84 16 25 C -0.11 -1.71 10.04 22.28 0.22 -1.49 16 26 C -0.12 -2.05 9.70 22.25 0.22 -1.84 16 27 C -0.11 -2.47 5.89 -19.77 -0.12 -2.58 16 28 C -0.11 -2.37 9.79 71.24 0.70 -1.67 16 29 H 0.04 1.59 4.99 -2.39 -0.01 1.58 16 30 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.03 1.26 8.09 -2.39 -0.02 1.24 16 33 H 0.04 1.59 6.45 -2.39 -0.02 1.57 16 34 H 0.25 13.02 8.31 -92.71 -0.77 12.25 16 35 H 0.05 2.30 7.40 -2.39 -0.02 2.28 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.04 1.57 6.67 -2.39 -0.02 1.55 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.05 2.00 7.05 -2.38 -0.02 1.98 16 40 H 0.41 14.46 7.90 -92.71 -0.73 13.73 16 41 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16 42 H 0.10 2.40 7.23 -2.39 -0.02 2.38 16 43 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.05 1.25 6.30 -2.39 -0.02 1.23 16 45 H 0.09 1.39 8.09 -2.39 -0.02 1.37 16 46 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 47 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 48 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 49 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.05 1.35 7.53 -2.39 -0.02 1.33 16 51 H 0.09 1.41 8.09 -2.38 -0.02 1.39 16 Total: -1.00 -61.81 406.15 5.59 -56.22 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: 0.19 Total: 32.39 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 6.56 Total: 4.91 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -2.87 Total: -101.28 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -0.31 Total: -35.16 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -61.81 5.59 -56.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156767290.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.845 kcal (2) G-P(sol) polarization free energy of solvation -61.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds