Wall clock time and date at job start Tue Mar 31 2020 19:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46977 * 2 1 4 4 C 1.36928 * 120.00353 * 275.73244 * 3 2 1 5 5 H 1.07997 * 120.00384 * 33.27782 * 4 3 2 6 6 C 1.38809 * 120.00147 * 213.27179 * 4 3 2 7 7 N 1.31620 * 120.00204 * 17.27043 * 6 4 3 8 8 Si 1.86805 * 120.00299 * 197.26833 * 6 4 3 9 9 H 1.48499 * 109.47044 * 60.00181 * 8 6 4 10 10 H 1.48500 * 109.47138 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46662 * 300.00020 * 8 6 4 12 12 C 1.46503 * 119.99583 * 95.73434 * 3 2 1 13 13 H 1.08994 * 109.47378 * 180.02562 * 12 3 2 14 14 C 1.53005 * 109.47081 * 60.08160 * 12 3 2 15 15 C 1.52996 * 109.47159 * 300.08198 * 12 3 2 16 16 N 1.46502 * 109.47164 * 304.99752 * 15 12 3 17 17 C 1.34771 * 120.00288 * 179.97438 * 16 15 12 18 18 O 1.21287 * 120.00121 * 0.02562 * 17 16 15 19 19 C 1.50701 * 120.00145 * 179.97438 * 17 16 15 20 20 O 1.42904 * 109.47246 * 180.02562 * 19 17 16 21 21 C 1.35903 * 116.99981 * 179.97438 * 20 19 17 22 22 C 1.38751 * 120.05552 * 359.73249 * 21 20 19 23 23 C 1.38122 * 119.94107 * 179.73843 * 22 21 20 24 24 C 1.38278 * 120.05772 * 0.50813 * 23 22 21 25 25 C 1.50703 * 119.94507 * 179.74208 * 24 23 22 26 26 C 1.38243 * 120.11060 * 359.77248 * 24 23 22 27 27 C 1.50703 * 119.97442 * 179.97438 * 26 24 23 28 28 C 1.38166 * 120.05665 * 359.96631 * 26 24 23 29 29 H 1.08996 * 109.47052 * 299.99821 * 1 2 3 30 30 H 1.09001 * 109.46770 * 59.99812 * 1 2 3 31 31 H 1.08998 * 109.46885 * 179.97438 * 1 2 3 32 32 H 1.09010 * 109.47148 * 240.00757 * 2 1 3 33 33 H 1.08996 * 109.47115 * 120.00819 * 2 1 3 34 34 H 0.96993 * 120.00543 * 179.97438 * 7 6 4 35 35 H 1.08991 * 109.47225 * 59.99528 * 14 12 3 36 36 H 1.09003 * 109.47193 * 180.02562 * 14 12 3 37 37 H 1.09004 * 109.46865 * 299.99981 * 14 12 3 38 38 H 1.09007 * 109.47405 * 184.99922 * 15 12 3 39 39 H 1.08997 * 109.47397 * 64.99943 * 15 12 3 40 40 H 0.96998 * 119.99673 * 0.02562 * 16 15 12 41 41 H 1.09004 * 109.47220 * 60.00408 * 19 17 16 42 42 H 1.08997 * 109.47277 * 300.00557 * 19 17 16 43 43 H 1.08002 * 120.02903 * 359.97438 * 22 21 20 44 44 H 1.08004 * 119.97073 * 180.25403 * 23 22 21 45 45 H 1.08998 * 109.46815 * 270.02211 * 25 24 23 46 46 H 1.08997 * 109.47334 * 30.02497 * 25 24 23 47 47 H 1.09002 * 109.46978 * 150.02444 * 25 24 23 48 48 H 1.09004 * 109.46942 * 270.02181 * 27 26 24 49 49 H 1.09005 * 109.46956 * 30.01290 * 27 26 24 50 50 H 1.08998 * 109.47765 * 150.01409 * 27 26 24 51 51 H 1.08000 * 120.02706 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1349 2.0663 -1.1799 5 1 1.4369 1.8813 -1.9830 6 6 3.1501 2.9987 -1.3437 7 7 4.1871 2.9918 -0.5333 8 14 3.0445 4.2633 -2.7146 9 1 1.8243 5.0898 -2.5327 10 1 4.2449 5.1367 -2.6758 11 1 2.9808 3.5681 -4.0253 12 6 2.3820 2.0295 1.2625 13 1 2.7200 3.0466 1.0645 14 6 3.5077 1.2411 1.9349 15 6 1.1630 2.0667 2.1863 16 7 0.0467 2.7175 1.4959 17 6 -1.1389 2.8631 2.1201 18 8 -1.2815 2.4560 3.2536 19 6 -2.2870 3.5330 1.4100 20 8 -3.4256 3.5677 2.2729 21 6 -4.5544 4.1437 1.7819 22 6 -4.5643 4.6698 0.4981 23 6 -5.7144 5.2498 -0.0005 24 6 -6.8522 5.3159 0.7825 25 6 -8.1040 5.9545 0.2381 26 6 -6.8433 4.7976 2.0641 27 6 -8.0849 4.8717 2.9150 28 6 -5.6969 4.2115 2.5655 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 4.8967 3.6430 -0.6479 35 1 4.3760 1.2145 1.2768 36 1 3.7779 1.7232 2.8744 37 1 3.1705 0.2236 2.1329 38 1 1.4080 2.6267 3.0889 39 1 0.8800 1.0492 2.4557 40 1 0.1606 3.0428 0.5892 41 1 -2.5319 2.9737 0.5071 42 1 -2.0040 4.5508 1.1414 43 1 -3.6745 4.6224 -0.1123 44 1 -5.7238 5.6558 -1.0012 45 1 -8.1005 7.0188 0.4730 46 1 -8.1393 5.8211 -0.8431 47 1 -8.9776 5.4853 0.6907 48 1 -8.0792 5.8003 3.4859 49 1 -8.9665 4.8445 2.2744 50 1 -8.1072 4.0242 3.5999 51 1 -5.6903 3.8072 3.5670 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156862719.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:58 Heat of formation + Delta-G solvation = -37.489997 kcal Electronic energy + Delta-G solvation = -29212.450995 eV Core-core repulsion = 25305.630578 eV Total energy + Delta-G solvation = -3906.820417 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.46745 -39.28623 -37.87102 -36.82410 -33.72218 -32.84646 -32.20485 -31.93042 -31.21562 -29.09821 -28.19230 -27.32721 -26.12730 -24.93930 -23.97734 -22.39777 -21.76578 -20.94096 -19.90681 -19.27430 -18.01903 -17.23187 -16.77250 -16.25517 -15.85809 -15.62303 -15.26514 -14.76545 -14.73883 -14.42609 -14.27187 -13.90944 -13.75834 -13.50083 -13.30191 -13.03267 -12.83332 -12.73839 -12.42718 -12.35592 -12.25173 -12.16575 -11.90388 -11.86804 -11.52788 -11.42665 -11.10755 -11.01055 -10.96517 -10.84030 -10.83738 -10.70989 -10.36891 -10.12474 -9.68371 -9.49082 -9.46244 -8.93892 -8.57549 -8.48100 -8.13512 -6.72224 -5.93487 -3.42449 1.17103 1.29278 2.74606 2.91241 3.27138 3.34300 3.35817 3.57013 3.95419 4.36820 4.59957 4.62030 4.81051 4.88491 4.95684 5.06641 5.09728 5.11497 5.19692 5.21786 5.27238 5.35106 5.42435 5.51916 5.57542 5.60790 5.80324 5.85703 5.93463 6.01350 6.13683 6.18757 6.21600 6.25667 6.34069 6.44159 6.48587 6.51148 6.57944 6.63836 6.65150 6.79837 6.87236 6.97366 7.11927 7.31022 7.43678 7.53488 7.71746 8.02622 8.37868 8.61124 9.10803 9.72176 10.29639 11.13154 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014189 B = 0.002692 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.928691 B =10398.801808 C =11553.395480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.140 3.860 3 N -0.583 5.583 4 C -0.265 4.265 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.283 1.283 10 H -0.291 1.291 11 H -0.282 1.282 12 C 0.176 3.824 13 H 0.100 0.900 14 C -0.144 4.144 15 C 0.104 3.896 16 N -0.696 5.696 17 C 0.509 3.491 18 O -0.537 6.537 19 C 0.041 3.959 20 O -0.289 6.289 21 C 0.133 3.867 22 C -0.212 4.212 23 C -0.075 4.075 24 C -0.131 4.131 25 C -0.110 4.110 26 C -0.050 4.050 27 C -0.117 4.117 28 C -0.149 4.149 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.033 0.967 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.256 0.744 35 H 0.079 0.921 36 H 0.033 0.967 37 H 0.030 0.970 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.412 0.588 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.130 0.870 44 H 0.124 0.876 45 H 0.066 0.934 46 H 0.062 0.938 47 H 0.067 0.933 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.067 0.933 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.687 4.346 2.539 19.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.395 4.395 5 H 0.081 0.919 6 C -0.188 4.188 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.210 1.210 10 H -0.217 1.217 11 H -0.209 1.209 12 C 0.069 3.931 13 H 0.118 0.882 14 C -0.204 4.204 15 C -0.021 4.021 16 N -0.349 5.349 17 C 0.292 3.708 18 O -0.414 6.414 19 C -0.038 4.038 20 O -0.201 6.201 21 C 0.087 3.913 22 C -0.231 4.231 23 C -0.093 4.093 24 C -0.132 4.132 25 C -0.167 4.167 26 C -0.050 4.050 27 C -0.173 4.173 28 C -0.168 4.168 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.249 0.751 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.148 0.852 44 H 0.142 0.858 45 H 0.085 0.915 46 H 0.081 0.919 47 H 0.086 0.914 48 H 0.091 0.909 49 H 0.090 0.910 50 H 0.086 0.914 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.553 4.058 3.532 19.317 hybrid contribution 0.334 0.858 -1.502 1.762 sum -18.219 4.916 2.030 18.979 Atomic orbital electron populations 1.22455 1.00087 0.99110 1.01397 1.20761 0.91635 0.87438 0.98798 1.43885 1.76007 1.08278 1.02247 1.19036 1.08699 1.18332 0.93425 0.91879 1.25167 0.94506 1.01351 0.97806 1.69989 1.07789 1.35958 1.39523 0.86464 0.77003 0.81563 0.82225 1.20985 1.21674 1.20858 1.20506 0.88832 0.99606 0.84184 0.88183 1.22022 1.01084 0.97983 0.99272 1.22217 0.87739 0.96322 0.95836 1.45820 1.10446 1.59382 1.19217 1.19887 0.83638 0.80397 0.86847 1.90702 1.82898 1.49636 1.18212 1.22539 0.85318 1.02274 0.93683 1.86155 1.18125 1.74660 1.41147 1.19049 0.86693 0.93169 0.92399 1.21299 1.00388 1.05520 0.95853 1.20798 0.91782 0.97450 0.99315 1.19639 0.96305 1.02855 0.94358 1.20770 0.94865 1.00198 1.00858 1.19508 0.94829 0.96556 0.94088 1.20871 0.94767 1.02655 0.99044 1.20269 0.90712 1.05074 1.00697 0.93039 0.93489 0.94779 0.94072 0.94460 0.93423 0.90241 0.94785 0.95105 0.92747 0.92635 0.75122 0.89039 0.89170 0.85220 0.85790 0.91536 0.91859 0.91387 0.90919 0.90968 0.91369 0.85114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.01 9.87 37.16 0.37 -2.64 16 2 C 0.14 2.76 5.67 -4.04 -0.02 2.74 16 3 N -0.58 -12.68 1.85 -165.66 -0.31 -12.99 16 4 C -0.27 -6.37 9.26 -15.06 -0.14 -6.51 16 5 H 0.06 1.52 7.89 -52.49 -0.41 1.11 16 6 C 0.01 0.30 4.85 -17.43 -0.08 0.22 16 7 N -0.89 -23.12 10.60 55.49 0.59 -22.53 16 8 Si 0.90 19.76 29.59 -169.99 -5.03 14.73 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 C 0.18 3.67 1.92 -67.93 -0.13 3.53 16 13 H 0.10 2.36 6.03 -51.93 -0.31 2.05 16 14 C -0.14 -2.89 9.05 37.16 0.34 -2.56 16 15 C 0.10 1.95 4.34 -4.04 -0.02 1.94 16 16 N -0.70 -12.18 3.99 -60.29 -0.24 -12.42 16 17 C 0.51 8.93 7.67 -10.99 -0.08 8.84 16 18 O -0.54 -11.42 16.50 -14.36 -0.24 -11.66 16 19 C 0.04 0.57 5.22 36.01 0.19 0.76 16 20 O -0.29 -4.56 9.67 -39.34 -0.38 -4.94 16 21 C 0.13 1.81 6.69 -39.22 -0.26 1.55 16 22 C -0.21 -2.52 9.04 -39.43 -0.36 -2.87 16 23 C -0.08 -0.79 9.69 -39.61 -0.38 -1.17 16 24 C -0.13 -1.31 5.88 -104.60 -0.62 -1.93 16 25 C -0.11 -0.78 9.60 36.01 0.35 -0.44 16 26 C -0.05 -0.52 5.88 -104.64 -0.62 -1.13 16 27 C -0.12 -0.87 9.60 36.01 0.35 -0.52 16 28 C -0.15 -1.85 9.64 -39.44 -0.38 -2.23 16 29 H 0.05 0.93 4.99 -51.93 -0.26 0.67 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.04 0.84 8.09 -51.92 -0.42 0.42 16 33 H 0.04 0.71 6.45 -51.93 -0.33 0.38 16 34 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 35 H 0.08 1.81 7.39 -51.93 -0.38 1.43 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.03 0.57 6.67 -51.93 -0.35 0.23 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.08 7.05 -51.93 -0.37 0.71 16 40 H 0.41 7.18 7.90 -40.82 -0.32 6.86 16 41 H 0.09 1.12 7.68 -51.93 -0.40 0.72 16 42 H 0.09 1.08 7.65 -51.93 -0.40 0.68 16 43 H 0.13 1.36 6.30 -52.49 -0.33 1.03 16 44 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 47 H 0.07 0.41 5.94 -51.93 -0.31 0.10 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.07 0.44 5.94 -51.93 -0.31 0.13 16 50 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 51 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 402.79 15.07 6.07 6.07 Total: -1.00 -28.77 402.79 -9.30 -38.08 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -8.26 Total: 8.08 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -1.51 Total: -2.42 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 0.04 Total: -47.93 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.62 Total: -16.60 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.03 Total: 14.73 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -28.77 -9.30 -38.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156862719.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.588 kcal (2) G-P(sol) polarization free energy of solvation -28.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds