Wall clock time and date at job start Tue Mar 31 2020 19:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46977 * 2 1 4 4 C 1.36928 * 120.00353 * 275.73244 * 3 2 1 5 5 H 1.07997 * 120.00384 * 33.27782 * 4 3 2 6 6 C 1.38809 * 120.00147 * 213.27179 * 4 3 2 7 7 N 1.31620 * 120.00204 * 17.27043 * 6 4 3 8 8 Si 1.86805 * 120.00299 * 197.26833 * 6 4 3 9 9 H 1.48499 * 109.47044 * 60.00181 * 8 6 4 10 10 H 1.48500 * 109.47138 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46662 * 300.00020 * 8 6 4 12 12 C 1.46503 * 119.99583 * 95.73434 * 3 2 1 13 13 H 1.08994 * 109.47378 * 180.02562 * 12 3 2 14 14 C 1.53005 * 109.47081 * 60.08160 * 12 3 2 15 15 C 1.52996 * 109.47159 * 300.08198 * 12 3 2 16 16 N 1.46502 * 109.47164 * 304.99752 * 15 12 3 17 17 C 1.34771 * 120.00288 * 179.97438 * 16 15 12 18 18 O 1.21287 * 120.00121 * 0.02562 * 17 16 15 19 19 C 1.50701 * 120.00145 * 179.97438 * 17 16 15 20 20 O 1.42904 * 109.47246 * 180.02562 * 19 17 16 21 21 C 1.35903 * 116.99981 * 179.97438 * 20 19 17 22 22 C 1.38751 * 120.05552 * 359.73249 * 21 20 19 23 23 C 1.38122 * 119.94107 * 179.73843 * 22 21 20 24 24 C 1.38278 * 120.05772 * 0.50813 * 23 22 21 25 25 C 1.50703 * 119.94507 * 179.74208 * 24 23 22 26 26 C 1.38243 * 120.11060 * 359.77248 * 24 23 22 27 27 C 1.50703 * 119.97442 * 179.97438 * 26 24 23 28 28 C 1.38166 * 120.05665 * 359.96631 * 26 24 23 29 29 H 1.08996 * 109.47052 * 299.99821 * 1 2 3 30 30 H 1.09001 * 109.46770 * 59.99812 * 1 2 3 31 31 H 1.08998 * 109.46885 * 179.97438 * 1 2 3 32 32 H 1.09010 * 109.47148 * 240.00757 * 2 1 3 33 33 H 1.08996 * 109.47115 * 120.00819 * 2 1 3 34 34 H 0.96993 * 120.00543 * 179.97438 * 7 6 4 35 35 H 1.08991 * 109.47225 * 59.99528 * 14 12 3 36 36 H 1.09003 * 109.47193 * 180.02562 * 14 12 3 37 37 H 1.09004 * 109.46865 * 299.99981 * 14 12 3 38 38 H 1.09007 * 109.47405 * 184.99922 * 15 12 3 39 39 H 1.08997 * 109.47397 * 64.99943 * 15 12 3 40 40 H 0.96998 * 119.99673 * 0.02562 * 16 15 12 41 41 H 1.09004 * 109.47220 * 60.00408 * 19 17 16 42 42 H 1.08997 * 109.47277 * 300.00557 * 19 17 16 43 43 H 1.08002 * 120.02903 * 359.97438 * 22 21 20 44 44 H 1.08004 * 119.97073 * 180.25403 * 23 22 21 45 45 H 1.08998 * 109.46815 * 270.02211 * 25 24 23 46 46 H 1.08997 * 109.47334 * 30.02497 * 25 24 23 47 47 H 1.09002 * 109.46978 * 150.02444 * 25 24 23 48 48 H 1.09004 * 109.46942 * 270.02181 * 27 26 24 49 49 H 1.09005 * 109.46956 * 30.01290 * 27 26 24 50 50 H 1.08998 * 109.47765 * 150.01409 * 27 26 24 51 51 H 1.08000 * 120.02706 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1349 2.0663 -1.1799 5 1 1.4369 1.8813 -1.9830 6 6 3.1501 2.9987 -1.3437 7 7 4.1871 2.9918 -0.5333 8 14 3.0445 4.2633 -2.7146 9 1 1.8243 5.0898 -2.5327 10 1 4.2449 5.1367 -2.6758 11 1 2.9808 3.5681 -4.0253 12 6 2.3820 2.0295 1.2625 13 1 2.7200 3.0466 1.0645 14 6 3.5077 1.2411 1.9349 15 6 1.1630 2.0667 2.1863 16 7 0.0467 2.7175 1.4959 17 6 -1.1389 2.8631 2.1201 18 8 -1.2815 2.4560 3.2536 19 6 -2.2870 3.5330 1.4100 20 8 -3.4256 3.5677 2.2729 21 6 -4.5544 4.1437 1.7819 22 6 -4.5643 4.6698 0.4981 23 6 -5.7144 5.2498 -0.0005 24 6 -6.8522 5.3159 0.7825 25 6 -8.1040 5.9545 0.2381 26 6 -6.8433 4.7976 2.0641 27 6 -8.0849 4.8717 2.9150 28 6 -5.6969 4.2115 2.5655 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 4.8967 3.6430 -0.6479 35 1 4.3760 1.2145 1.2768 36 1 3.7779 1.7232 2.8744 37 1 3.1705 0.2236 2.1329 38 1 1.4080 2.6267 3.0889 39 1 0.8800 1.0492 2.4557 40 1 0.1606 3.0428 0.5892 41 1 -2.5319 2.9737 0.5071 42 1 -2.0040 4.5508 1.1414 43 1 -3.6745 4.6224 -0.1123 44 1 -5.7238 5.6558 -1.0012 45 1 -8.1005 7.0188 0.4730 46 1 -8.1393 5.8211 -0.8431 47 1 -8.9776 5.4853 0.6907 48 1 -8.0792 5.8003 3.4859 49 1 -8.9665 4.8445 2.2744 50 1 -8.1072 4.0242 3.5999 51 1 -5.6903 3.8072 3.5670 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156862719.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:57 Heat of formation + Delta-G solvation = -50.786110 kcal Electronic energy + Delta-G solvation = -29213.027558 eV Core-core repulsion = 25305.630578 eV Total energy + Delta-G solvation = -3907.396980 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.48994 -40.56679 -38.98671 -38.36870 -35.29390 -33.72406 -33.61418 -33.04812 -32.72671 -30.27579 -29.81100 -28.19004 -26.90629 -26.33009 -25.76320 -23.38619 -23.18748 -21.96759 -21.21029 -20.90453 -19.05346 -18.78714 -18.12743 -17.42626 -17.05201 -16.92040 -16.41233 -16.28556 -16.12757 -15.50164 -15.39594 -15.09624 -14.93774 -14.71161 -14.33277 -14.29170 -13.99605 -13.83082 -13.72843 -13.55570 -13.50282 -13.24313 -13.09333 -12.90953 -12.77240 -12.76327 -12.72409 -12.50598 -12.39407 -12.09711 -12.09045 -11.86646 -11.75325 -11.74022 -11.35385 -11.17124 -10.91834 -10.41540 -9.99380 -9.75848 -9.00632 -8.52291 -7.80903 -5.31267 0.34587 0.43513 1.52611 1.52751 1.55632 1.59996 1.60288 2.55832 2.73616 2.74094 3.33611 3.59793 3.68365 3.86963 3.90002 3.98876 4.05112 4.10759 4.23855 4.28162 4.34765 4.41519 4.46293 4.56039 4.68068 4.74976 4.80168 4.80673 4.84101 4.88127 4.93871 4.95871 4.97264 5.02756 5.06920 5.20023 5.22547 5.23008 5.32832 5.38827 5.44072 5.45626 5.58470 5.70335 5.72499 5.76678 5.86064 5.88902 6.35305 6.50955 6.61730 7.19513 7.26056 7.93392 8.46432 9.23124 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014189 B = 0.002692 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.928691 B =10398.801808 C =11553.395480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.138 3.862 3 N -0.591 5.591 4 C -0.262 4.262 5 H 0.064 0.936 6 C -0.032 4.032 7 N -0.916 5.916 8 Si 0.953 3.047 9 H -0.272 1.272 10 H -0.303 1.303 11 H -0.284 1.284 12 C 0.183 3.817 13 H 0.073 0.927 14 C -0.136 4.136 15 C 0.116 3.884 16 N -0.691 5.691 17 C 0.510 3.490 18 O -0.578 6.578 19 C 0.047 3.953 20 O -0.317 6.317 21 C 0.105 3.895 22 C -0.219 4.219 23 C -0.082 4.082 24 C -0.133 4.133 25 C -0.110 4.110 26 C -0.055 4.055 27 C -0.116 4.116 28 C -0.169 4.169 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.248 0.752 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.041 0.959 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.414 0.586 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.141 0.859 44 H 0.147 0.853 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.082 0.918 49 H 0.090 0.910 50 H 0.069 0.931 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.212 5.069 1.486 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.013 3.987 3 N -0.313 5.313 4 C -0.392 4.392 5 H 0.081 0.919 6 C -0.230 4.230 7 N -0.560 5.560 8 Si 0.782 3.218 9 H -0.198 1.198 10 H -0.230 1.230 11 H -0.210 1.210 12 C 0.075 3.925 13 H 0.091 0.909 14 C -0.195 4.195 15 C -0.009 4.009 16 N -0.343 5.343 17 C 0.296 3.704 18 O -0.458 6.458 19 C -0.031 4.031 20 O -0.231 6.231 21 C 0.060 3.940 22 C -0.238 4.238 23 C -0.100 4.100 24 C -0.133 4.133 25 C -0.166 4.166 26 C -0.055 4.055 27 C -0.172 4.172 28 C -0.187 4.187 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.251 0.749 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.159 0.841 44 H 0.165 0.835 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.099 0.901 48 H 0.101 0.899 49 H 0.108 0.892 50 H 0.088 0.912 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -21.109 4.777 2.461 21.782 hybrid contribution 1.059 0.602 -1.172 1.690 sum -20.050 5.378 1.289 20.799 Atomic orbital electron populations 1.22271 0.98087 1.00305 1.00939 1.20836 0.93040 0.86277 0.98578 1.44007 1.76136 1.09111 1.02013 1.19223 1.08042 1.17997 0.93960 0.91864 1.25736 0.94459 1.03044 0.99711 1.70130 1.08342 1.36428 1.41088 0.85585 0.76660 0.79581 0.79935 1.19754 1.23012 1.21022 1.20346 0.89713 0.98104 0.84289 0.90926 1.21893 0.99651 0.98790 0.99200 1.21941 0.87345 0.96326 0.95307 1.45744 1.10328 1.59080 1.19122 1.20435 0.84127 0.79558 0.86324 1.90679 1.83581 1.51448 1.20089 1.22513 0.83922 1.03336 0.93335 1.86095 1.19026 1.75664 1.42274 1.19296 0.86352 0.94728 0.93628 1.21482 1.01490 1.05515 0.95273 1.21153 0.91442 0.96958 1.00413 1.20074 0.97360 1.01865 0.94019 1.20840 0.93690 1.00557 1.01503 1.19874 0.95123 0.95677 0.94812 1.20943 0.93948 1.03250 0.99095 1.20477 0.91435 1.06043 1.00768 0.93641 0.93658 0.92788 0.95024 0.93942 0.94243 0.93227 0.93215 0.93958 0.92709 0.92929 0.74878 0.86978 0.86930 0.84139 0.83527 0.90542 0.90825 0.90134 0.89925 0.89186 0.91188 0.85646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.24 9.87 71.98 0.71 -4.53 16 2 C 0.14 5.32 5.67 86.38 0.49 5.81 16 3 N -0.59 -25.50 1.85 -678.04 -1.25 -26.76 16 4 C -0.26 -12.46 9.26 84.03 0.78 -11.68 16 5 H 0.06 2.98 7.89 -2.91 -0.02 2.96 16 6 C -0.03 -1.58 4.85 84.86 0.41 -1.17 16 7 N -0.92 -48.31 10.60 21.65 0.23 -48.08 16 8 Si 0.95 40.51 29.59 68.60 2.03 42.54 16 9 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 10 H -0.30 -13.43 7.11 99.48 0.71 -12.73 16 11 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 12 C 0.18 7.61 1.92 44.99 0.09 7.70 16 13 H 0.07 3.48 6.03 -2.39 -0.01 3.47 16 14 C -0.14 -5.46 9.05 71.98 0.65 -4.81 16 15 C 0.12 4.34 4.34 86.38 0.37 4.71 16 16 N -0.69 -23.77 3.99 -463.06 -1.85 -25.61 16 17 C 0.51 17.69 7.67 87.66 0.67 18.36 16 18 O -0.58 -24.76 16.50 15.99 0.26 -24.50 16 19 C 0.05 1.28 5.22 71.24 0.37 1.65 16 20 O -0.32 -10.06 9.67 -73.42 -0.71 -10.77 16 21 C 0.10 2.84 6.69 22.50 0.15 2.99 16 22 C -0.22 -4.90 9.04 22.36 0.20 -4.70 16 23 C -0.08 -1.53 9.69 22.25 0.22 -1.32 16 24 C -0.13 -2.35 5.88 -19.85 -0.12 -2.47 16 25 C -0.11 -1.19 9.60 71.24 0.68 -0.51 16 26 C -0.05 -1.07 5.88 -19.88 -0.12 -1.18 16 27 C -0.12 -1.48 9.60 71.24 0.68 -0.80 16 28 C -0.17 -4.18 9.64 22.36 0.22 -3.96 16 29 H 0.04 1.58 4.99 -2.39 -0.01 1.56 16 30 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.03 1.27 8.09 -2.38 -0.02 1.25 16 33 H 0.04 1.58 6.45 -2.39 -0.02 1.56 16 34 H 0.25 13.03 8.31 -92.71 -0.77 12.26 16 35 H 0.05 2.29 7.39 -2.39 -0.02 2.27 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.04 1.56 6.67 -2.38 -0.02 1.54 16 38 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.05 2.00 7.05 -2.39 -0.02 1.99 16 40 H 0.41 14.06 7.90 -92.71 -0.73 13.33 16 41 H 0.11 2.56 7.68 -2.38 -0.02 2.54 16 42 H 0.11 2.53 7.65 -2.39 -0.02 2.51 16 43 H 0.14 2.68 6.30 -2.91 -0.02 2.66 16 44 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 45 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.07 0.67 8.08 -2.39 -0.02 0.65 16 47 H 0.08 0.68 5.94 -2.39 -0.01 0.67 16 48 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.09 0.82 5.94 -2.38 -0.01 0.80 16 50 H 0.07 0.87 8.08 -2.39 -0.02 0.85 16 51 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -62.40 402.79 5.38 -57.02 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: 0.20 Total: 32.05 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 6.47 Total: 4.11 kcal Atomic # 7 Polarization: -97.58 SS G_CDS: -2.87 Total: -100.45 kcal Atomic # 8 Polarization: -34.82 SS G_CDS: -0.45 Total: -35.26 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -62.40 5.38 -57.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156862719.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.238 kcal (2) G-P(sol) polarization free energy of solvation -62.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds