Wall clock time and date at job start Tue Mar 31 2020 19:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47604 * 2 1 4 4 C 1.36943 * 119.99846 * 84.27292 * 3 2 1 5 5 H 1.07999 * 119.99904 * 28.84108 * 4 3 2 6 6 C 1.38809 * 119.99706 * 209.11638 * 4 3 2 7 7 N 1.31618 * 120.00334 * 18.63280 * 6 4 3 8 8 Si 1.86797 * 119.99733 * 198.63168 * 6 4 3 9 9 H 1.48503 * 109.47368 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47160 * 120.00179 * 8 6 4 11 11 H 1.48498 * 109.47041 * 239.99906 * 8 6 4 12 12 C 1.46498 * 120.00095 * 264.27653 * 3 2 1 13 13 H 1.09003 * 109.46860 * 183.52441 * 12 3 2 14 14 C 1.52998 * 109.47430 * 63.52157 * 12 3 2 15 15 C 1.52998 * 109.46760 * 303.51820 * 12 3 2 16 16 N 1.46499 * 109.47758 * 305.00230 * 15 12 3 17 17 C 1.34770 * 120.00144 * 180.02562 * 16 15 12 18 18 O 1.21283 * 120.00169 * 359.97438 * 17 16 15 19 19 C 1.50705 * 120.00193 * 179.97438 * 17 16 15 20 20 H 1.09006 * 109.46963 * 59.99667 * 19 17 16 21 21 C 1.52998 * 109.46801 * 300.00137 * 19 17 16 22 22 C 1.52999 * 109.47318 * 179.97438 * 19 17 16 23 23 O 1.42904 * 109.46883 * 185.00073 * 22 19 17 24 24 C 1.35903 * 116.99469 * 180.02562 * 23 22 19 25 25 C 1.38727 * 120.05814 * 359.72817 * 24 23 22 26 26 C 1.38150 * 119.94023 * 179.74565 * 25 24 23 27 27 C 1.38262 * 120.05657 * 0.50355 * 26 25 24 28 28 C 1.38270 * 120.11268 * 359.77161 * 27 26 25 29 29 C 1.38145 * 120.05252 * 359.97410 * 28 27 26 30 30 H 1.08998 * 109.46770 * 299.99864 * 1 2 3 31 31 H 1.08999 * 109.47057 * 59.99877 * 1 2 3 32 32 H 1.09000 * 109.47166 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47350 * 239.99686 * 2 1 3 34 34 H 1.09001 * 109.46755 * 120.00568 * 2 1 3 35 35 H 0.96997 * 119.99939 * 180.02562 * 7 6 4 36 36 H 1.09003 * 109.46874 * 300.00271 * 14 12 3 37 37 H 1.08999 * 109.46541 * 59.99998 * 14 12 3 38 38 H 1.08991 * 109.47194 * 179.97438 * 14 12 3 39 39 H 1.09004 * 109.46866 * 65.00698 * 15 12 3 40 40 H 1.09006 * 109.47115 * 184.99975 * 15 12 3 41 41 H 0.97000 * 119.99579 * 359.97438 * 16 15 12 42 42 H 1.08999 * 109.47519 * 60.00200 * 21 19 17 43 43 H 1.09004 * 109.46843 * 179.97438 * 21 19 17 44 44 H 1.08994 * 109.47349 * 299.99698 * 21 19 17 45 45 H 1.08997 * 109.47154 * 305.00225 * 22 19 17 46 46 H 1.08996 * 109.46972 * 65.00507 * 22 19 17 47 47 H 1.08003 * 120.02882 * 359.97438 * 25 24 23 48 48 H 1.07996 * 119.96715 * 180.27419 * 26 25 24 49 49 H 1.07994 * 119.94744 * 179.74726 * 27 26 25 50 50 H 1.07994 * 119.97251 * 179.97438 * 28 27 26 51 51 H 1.08000 * 120.02773 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1351 2.0661 1.1801 5 1 2.3293 1.5312 2.0980 6 6 1.9982 3.4473 1.1972 7 7 1.4075 4.0626 0.1948 8 14 2.6522 4.4327 2.6431 9 1 3.2675 3.5116 3.6322 10 1 3.6735 5.3980 2.1628 11 1 1.5352 5.1720 3.2840 12 6 2.3819 2.0295 -1.2624 13 1 2.7793 3.0239 -1.0588 14 6 1.1418 2.1479 -2.1506 15 6 3.4441 1.1927 -1.9781 16 7 4.5832 0.9789 -1.0820 17 6 5.6458 0.2641 -1.5016 18 8 5.6590 -0.2027 -2.6210 19 6 6.8178 0.0446 -0.5800 20 1 6.4833 -0.4811 0.3144 21 6 7.4149 1.3964 -0.1836 22 6 7.8799 -0.7924 -1.2958 23 8 8.9381 -1.0988 -0.3856 24 6 9.9697 -1.8415 -0.8664 25 6 9.9609 -2.2713 -2.1854 26 6 11.0133 -3.0217 -2.6731 27 6 12.0697 -3.3532 -1.8450 28 6 12.0781 -2.9308 -0.5284 29 6 11.0306 -2.1758 -0.0373 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.3122 5.0279 0.2067 36 1 0.7445 1.1534 -2.3541 37 1 0.3853 2.7441 -1.6406 38 1 1.4122 2.6307 -3.0896 39 1 3.0183 0.2298 -2.2607 40 1 3.7790 1.7183 -2.8724 41 1 4.5728 1.3525 -0.1869 42 1 6.6581 1.9923 0.3266 43 1 8.2623 1.2377 0.4834 44 1 7.7494 1.9222 -1.0778 45 1 7.4310 -1.7180 -1.6561 46 1 8.2782 -0.2293 -2.1397 47 1 9.1338 -2.0164 -2.8314 48 1 11.0090 -3.3527 -3.7010 49 1 12.8895 -3.9433 -2.2269 50 1 12.9042 -3.1914 0.1166 51 1 11.0374 -1.8465 0.9912 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156913020.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:15 Heat of formation + Delta-G solvation = -40.864838 kcal Electronic energy + Delta-G solvation = -29232.878662 eV Core-core repulsion = 25325.911901 eV Total energy + Delta-G solvation = -3906.966761 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.38029 -39.45634 -37.61116 -36.94264 -33.96841 -33.64875 -31.89802 -31.21269 -30.76368 -29.87496 -28.35482 -26.84909 -25.77173 -24.04680 -23.34648 -22.63095 -21.70809 -21.56628 -19.63380 -19.17529 -18.50367 -17.11043 -16.65615 -16.19222 -15.98807 -15.91816 -15.39738 -15.02151 -14.72806 -14.47190 -14.31255 -13.78374 -13.69112 -13.57929 -13.27487 -13.17807 -12.74899 -12.62979 -12.41814 -12.18741 -11.94018 -11.78579 -11.75768 -11.59042 -11.45992 -11.32691 -11.28905 -11.06500 -10.85704 -10.84587 -10.79324 -10.50766 -10.30801 -9.94717 -9.62784 -9.53652 -9.43598 -9.20528 -8.58226 -8.47039 -8.36663 -6.78175 -5.90987 -3.34552 1.13939 1.26212 2.87122 2.94673 3.28624 3.39267 3.39418 3.60372 3.87108 4.39976 4.54046 4.67533 4.76024 4.82007 4.93616 5.03605 5.16293 5.20796 5.24821 5.32551 5.36280 5.44739 5.51948 5.55727 5.79483 5.80126 5.87494 5.93616 6.07265 6.11704 6.12553 6.18948 6.23422 6.29689 6.32752 6.41553 6.46961 6.52614 6.59045 6.67173 6.70600 6.75457 6.94159 7.01353 7.24059 7.27806 7.48179 7.57867 7.74817 8.05039 8.36609 8.61996 9.12232 9.74656 10.29107 11.16079 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016020 B = 0.002530 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.379788 B =11062.539878 C =11958.242436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.142 3.858 3 N -0.583 5.583 4 C -0.258 4.258 5 H 0.067 0.933 6 C 0.007 3.993 7 N -0.892 5.892 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.291 1.291 12 C 0.177 3.823 13 H 0.103 0.897 14 C -0.143 4.143 15 C 0.101 3.899 16 N -0.697 5.697 17 C 0.515 3.485 18 O -0.562 6.562 19 C -0.109 4.109 20 H 0.108 0.892 21 C -0.143 4.143 22 C 0.082 3.918 23 O -0.314 6.314 24 C 0.136 3.864 25 C -0.209 4.209 26 C -0.081 4.081 27 C -0.164 4.164 28 C -0.083 4.083 29 C -0.155 4.155 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.027 0.973 33 H 0.037 0.963 34 H 0.036 0.964 35 H 0.253 0.747 36 H 0.029 0.971 37 H 0.080 0.920 38 H 0.029 0.971 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.412 0.588 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.059 0.941 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.131 0.869 48 H 0.123 0.877 49 H 0.121 0.879 50 H 0.127 0.873 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.613 -9.947 -2.992 18.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.016 3.984 3 N -0.305 5.305 4 C -0.388 4.388 5 H 0.085 0.915 6 C -0.192 4.192 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.216 1.216 11 H -0.218 1.218 12 C 0.069 3.931 13 H 0.121 0.879 14 C -0.203 4.203 15 C -0.024 4.024 16 N -0.347 5.347 17 C 0.300 3.700 18 O -0.442 6.442 19 C -0.131 4.131 20 H 0.126 0.874 21 C -0.201 4.201 22 C 0.006 3.994 23 O -0.227 6.227 24 C 0.090 3.910 25 C -0.228 4.228 26 C -0.099 4.099 27 C -0.183 4.183 28 C -0.101 4.101 29 C -0.174 4.174 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.099 0.901 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.249 0.751 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.149 0.851 48 H 0.141 0.859 49 H 0.139 0.861 50 H 0.145 0.855 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 15.513 -9.999 -3.591 18.802 hybrid contribution -0.064 0.757 0.893 1.172 sum 15.449 -9.242 -2.698 18.203 Atomic orbital electron populations 1.22395 0.99781 0.98370 1.02098 1.20796 0.91945 0.87610 0.98099 1.44030 1.73785 1.09731 1.02967 1.19196 1.43050 0.89221 0.87303 0.91532 1.25047 0.98919 0.97885 0.97387 1.70022 1.42809 1.08505 1.32230 0.86342 0.78510 0.80240 0.82378 1.20217 1.21557 1.21833 1.20522 0.90939 0.96632 0.84963 0.87916 1.22122 1.00590 0.99546 0.98020 1.22147 0.87122 1.00531 0.92643 1.45903 1.17077 1.52601 1.19074 1.20136 0.83662 0.78697 0.87473 1.90659 1.81414 1.51176 1.20994 1.21158 0.93464 0.98699 0.99746 0.87436 1.21763 1.01825 0.94332 1.02167 1.22520 0.85964 0.99674 0.91224 1.85996 1.29601 1.66963 1.40183 1.19040 0.88151 0.91455 0.92319 1.21401 1.01676 1.04303 0.95379 1.20972 0.93057 0.96218 0.99617 1.21048 0.99546 1.03311 0.94354 1.20952 0.97347 0.96258 0.95588 1.20466 0.93627 1.03090 1.00230 0.92899 0.93155 0.95357 0.94463 0.94563 0.93642 0.95170 0.90077 0.95180 0.92812 0.92706 0.75073 0.91175 0.90952 0.92227 0.91020 0.91224 0.85114 0.85873 0.86097 0.85524 0.85226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 10.02 37.16 0.37 -2.80 16 2 C 0.14 2.78 5.73 -4.04 -0.02 2.76 16 3 N -0.58 -12.66 1.84 -165.67 -0.30 -12.96 16 4 C -0.26 -6.22 9.50 -15.06 -0.14 -6.36 16 5 H 0.07 1.62 7.90 -52.49 -0.41 1.21 16 6 C 0.01 0.18 4.84 -17.43 -0.08 0.09 16 7 N -0.89 -23.14 10.24 55.49 0.57 -22.57 16 8 Si 0.90 19.92 29.59 -169.99 -5.03 14.89 16 9 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 12 C 0.18 3.68 1.93 -67.93 -0.13 3.54 16 13 H 0.10 2.44 5.93 -51.93 -0.31 2.13 16 14 C -0.14 -2.90 8.25 37.16 0.31 -2.59 16 15 C 0.10 1.87 4.85 -4.04 -0.02 1.85 16 16 N -0.70 -11.97 5.28 -60.29 -0.32 -12.29 16 17 C 0.52 8.46 7.15 -10.99 -0.08 8.38 16 18 O -0.56 -10.77 15.92 5.56 0.09 -10.68 16 19 C -0.11 -1.44 2.96 -91.77 -0.27 -1.71 16 20 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 21 C -0.14 -1.73 8.99 37.16 0.33 -1.39 16 22 C 0.08 1.04 3.47 37.16 0.13 1.17 16 23 O -0.31 -4.01 9.67 -19.43 -0.19 -4.20 16 24 C 0.14 1.63 6.69 -39.22 -0.26 1.37 16 25 C -0.21 -2.34 9.04 -39.43 -0.36 -2.70 16 26 C -0.08 -0.77 10.04 -39.60 -0.40 -1.17 16 27 C -0.16 -1.43 10.04 -39.56 -0.40 -1.83 16 28 C -0.08 -0.74 10.04 -39.60 -0.40 -1.13 16 29 C -0.16 -1.63 9.99 -39.43 -0.39 -2.02 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.98 6.03 -51.93 -0.31 0.67 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.04 0.70 6.35 -51.93 -0.33 0.37 16 34 H 0.04 0.70 8.09 -51.93 -0.42 0.28 16 35 H 0.25 6.49 8.31 -40.82 -0.34 6.15 16 36 H 0.03 0.57 6.50 -51.93 -0.34 0.23 16 37 H 0.08 1.88 7.22 -51.93 -0.37 1.50 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 1.02 6.76 -51.93 -0.35 0.67 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.41 7.18 7.50 -40.82 -0.31 6.87 16 42 H 0.07 0.86 7.56 -51.93 -0.39 0.47 16 43 H 0.07 0.81 7.82 -51.93 -0.41 0.40 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.07 0.95 7.46 -51.93 -0.39 0.56 16 46 H 0.07 0.89 7.67 -51.93 -0.40 0.49 16 47 H 0.13 1.43 6.30 -52.48 -0.33 1.10 16 48 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 49 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 50 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 51 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 405.89 15.07 6.12 6.12 Total: -1.00 -27.27 405.89 -9.32 -36.59 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -8.43 Total: 9.64 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -1.82 Total: -4.53 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: -0.06 Total: -47.82 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.10 Total: -14.88 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.03 Total: 14.89 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -27.27 -9.32 -36.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156913020.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.274 kcal (2) G-P(sol) polarization free energy of solvation -27.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds