Wall clock time and date at job start Tue Mar 31 2020 19:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47604 * 2 1 4 4 C 1.36943 * 119.99846 * 84.27292 * 3 2 1 5 5 H 1.07999 * 119.99904 * 28.84108 * 4 3 2 6 6 C 1.38809 * 119.99706 * 209.11638 * 4 3 2 7 7 N 1.31618 * 120.00334 * 18.63280 * 6 4 3 8 8 Si 1.86797 * 119.99733 * 198.63168 * 6 4 3 9 9 H 1.48503 * 109.47368 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47160 * 120.00179 * 8 6 4 11 11 H 1.48498 * 109.47041 * 239.99906 * 8 6 4 12 12 C 1.46498 * 120.00095 * 264.27653 * 3 2 1 13 13 H 1.09003 * 109.46860 * 183.52441 * 12 3 2 14 14 C 1.52998 * 109.47430 * 63.52157 * 12 3 2 15 15 C 1.52998 * 109.46760 * 303.51820 * 12 3 2 16 16 N 1.46499 * 109.47758 * 305.00230 * 15 12 3 17 17 C 1.34770 * 120.00144 * 180.02562 * 16 15 12 18 18 O 1.21283 * 120.00169 * 359.97438 * 17 16 15 19 19 C 1.50705 * 120.00193 * 179.97438 * 17 16 15 20 20 H 1.09006 * 109.46963 * 59.99667 * 19 17 16 21 21 C 1.52998 * 109.46801 * 300.00137 * 19 17 16 22 22 C 1.52999 * 109.47318 * 179.97438 * 19 17 16 23 23 O 1.42904 * 109.46883 * 185.00073 * 22 19 17 24 24 C 1.35903 * 116.99469 * 180.02562 * 23 22 19 25 25 C 1.38727 * 120.05814 * 359.72817 * 24 23 22 26 26 C 1.38150 * 119.94023 * 179.74565 * 25 24 23 27 27 C 1.38262 * 120.05657 * 0.50355 * 26 25 24 28 28 C 1.38270 * 120.11268 * 359.77161 * 27 26 25 29 29 C 1.38145 * 120.05252 * 359.97410 * 28 27 26 30 30 H 1.08998 * 109.46770 * 299.99864 * 1 2 3 31 31 H 1.08999 * 109.47057 * 59.99877 * 1 2 3 32 32 H 1.09000 * 109.47166 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47350 * 239.99686 * 2 1 3 34 34 H 1.09001 * 109.46755 * 120.00568 * 2 1 3 35 35 H 0.96997 * 119.99939 * 180.02562 * 7 6 4 36 36 H 1.09003 * 109.46874 * 300.00271 * 14 12 3 37 37 H 1.08999 * 109.46541 * 59.99998 * 14 12 3 38 38 H 1.08991 * 109.47194 * 179.97438 * 14 12 3 39 39 H 1.09004 * 109.46866 * 65.00698 * 15 12 3 40 40 H 1.09006 * 109.47115 * 184.99975 * 15 12 3 41 41 H 0.97000 * 119.99579 * 359.97438 * 16 15 12 42 42 H 1.08999 * 109.47519 * 60.00200 * 21 19 17 43 43 H 1.09004 * 109.46843 * 179.97438 * 21 19 17 44 44 H 1.08994 * 109.47349 * 299.99698 * 21 19 17 45 45 H 1.08997 * 109.47154 * 305.00225 * 22 19 17 46 46 H 1.08996 * 109.46972 * 65.00507 * 22 19 17 47 47 H 1.08003 * 120.02882 * 359.97438 * 25 24 23 48 48 H 1.07996 * 119.96715 * 180.27419 * 26 25 24 49 49 H 1.07994 * 119.94744 * 179.74726 * 27 26 25 50 50 H 1.07994 * 119.97251 * 179.97438 * 28 27 26 51 51 H 1.08000 * 120.02773 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1351 2.0661 1.1801 5 1 2.3293 1.5312 2.0980 6 6 1.9982 3.4473 1.1972 7 7 1.4075 4.0626 0.1948 8 14 2.6522 4.4327 2.6431 9 1 3.2675 3.5116 3.6322 10 1 3.6735 5.3980 2.1628 11 1 1.5352 5.1720 3.2840 12 6 2.3819 2.0295 -1.2624 13 1 2.7793 3.0239 -1.0588 14 6 1.1418 2.1479 -2.1506 15 6 3.4441 1.1927 -1.9781 16 7 4.5832 0.9789 -1.0820 17 6 5.6458 0.2641 -1.5016 18 8 5.6590 -0.2027 -2.6210 19 6 6.8178 0.0446 -0.5800 20 1 6.4833 -0.4811 0.3144 21 6 7.4149 1.3964 -0.1836 22 6 7.8799 -0.7924 -1.2958 23 8 8.9381 -1.0988 -0.3856 24 6 9.9697 -1.8415 -0.8664 25 6 9.9609 -2.2713 -2.1854 26 6 11.0133 -3.0217 -2.6731 27 6 12.0697 -3.3532 -1.8450 28 6 12.0781 -2.9308 -0.5284 29 6 11.0306 -2.1758 -0.0373 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.3122 5.0279 0.2067 36 1 0.7445 1.1534 -2.3541 37 1 0.3853 2.7441 -1.6406 38 1 1.4122 2.6307 -3.0896 39 1 3.0183 0.2298 -2.2607 40 1 3.7790 1.7183 -2.8724 41 1 4.5728 1.3525 -0.1869 42 1 6.6581 1.9923 0.3266 43 1 8.2623 1.2377 0.4834 44 1 7.7494 1.9222 -1.0778 45 1 7.4310 -1.7180 -1.6561 46 1 8.2782 -0.2293 -2.1397 47 1 9.1338 -2.0164 -2.8314 48 1 11.0090 -3.3527 -3.7010 49 1 12.8895 -3.9433 -2.2269 50 1 12.9042 -3.1914 0.1166 51 1 11.0374 -1.8465 0.9912 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156913020.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:14 Heat of formation + Delta-G solvation = -53.766594 kcal Electronic energy + Delta-G solvation = -29233.438124 eV Core-core repulsion = 25325.911901 eV Total energy + Delta-G solvation = -3907.526223 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.36922 -40.65944 -38.75379 -38.29935 -35.39251 -34.85974 -33.70394 -32.36317 -31.91128 -30.67824 -30.09309 -27.83972 -27.23523 -25.82106 -24.41874 -23.44186 -23.26714 -22.55980 -21.12969 -20.62765 -19.43709 -18.77785 -17.77895 -17.35337 -17.09019 -16.81157 -16.60086 -16.47694 -16.33579 -15.77835 -15.44383 -15.21559 -14.80600 -14.64530 -14.43474 -14.30812 -14.13709 -13.95042 -13.63822 -13.50938 -13.29173 -13.19787 -13.08059 -12.98691 -12.81264 -12.70275 -12.61150 -12.46789 -12.23149 -12.13491 -12.04408 -11.81332 -11.71822 -11.66254 -11.28005 -11.24211 -10.81469 -10.43639 -9.94652 -9.93765 -9.17347 -8.58650 -7.79909 -5.23826 0.40044 0.49864 1.49876 1.56528 1.61749 1.62746 1.83511 2.56515 2.65514 2.85812 3.35357 3.51305 3.65217 3.77115 3.88369 3.93364 4.01077 4.20319 4.26969 4.31601 4.36004 4.46982 4.50594 4.52045 4.54020 4.59854 4.73782 4.74698 4.83178 4.85523 4.89918 4.91592 4.94563 5.03955 5.10097 5.10661 5.17776 5.22091 5.34264 5.38483 5.50056 5.52049 5.61189 5.61235 5.76758 5.77471 5.86856 5.93306 6.40679 6.49729 6.66194 7.23380 7.27384 7.95329 8.44996 9.25017 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016020 B = 0.002530 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.379788 B =11062.539878 C =11958.242436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.141 3.859 3 N -0.590 5.590 4 C -0.254 4.254 5 H 0.065 0.935 6 C -0.035 4.035 7 N -0.916 5.916 8 Si 0.949 3.051 9 H -0.268 1.268 10 H -0.292 1.292 11 H -0.304 1.304 12 C 0.183 3.817 13 H 0.074 0.926 14 C -0.133 4.133 15 C 0.114 3.886 16 N -0.697 5.697 17 C 0.518 3.482 18 O -0.589 6.589 19 C -0.101 4.101 20 H 0.119 0.881 21 C -0.138 4.138 22 C 0.091 3.909 23 O -0.321 6.321 24 C 0.108 3.892 25 C -0.225 4.225 26 C -0.088 4.088 27 C -0.163 4.163 28 C -0.083 4.083 29 C -0.166 4.166 30 H 0.029 0.971 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.040 0.960 35 H 0.247 0.753 36 H 0.041 0.959 37 H 0.049 0.951 38 H 0.043 0.957 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.412 0.588 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.125 0.875 48 H 0.142 0.858 49 H 0.149 0.851 50 H 0.156 0.844 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.534 -11.508 -2.661 21.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.015 3.985 3 N -0.312 5.312 4 C -0.384 4.384 5 H 0.082 0.918 6 C -0.232 4.232 7 N -0.561 5.561 8 Si 0.779 3.221 9 H -0.192 1.192 10 H -0.219 1.219 11 H -0.232 1.232 12 C 0.076 3.924 13 H 0.092 0.908 14 C -0.193 4.193 15 C -0.012 4.012 16 N -0.346 5.346 17 C 0.304 3.696 18 O -0.471 6.471 19 C -0.122 4.122 20 H 0.137 0.863 21 C -0.195 4.195 22 C 0.015 3.985 23 O -0.235 6.235 24 C 0.063 3.937 25 C -0.244 4.244 26 C -0.106 4.106 27 C -0.181 4.181 28 C -0.100 4.100 29 C -0.185 4.185 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.249 0.751 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.143 0.857 48 H 0.160 0.840 49 H 0.166 0.834 50 H 0.173 0.827 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 17.449 -11.585 -3.250 21.196 hybrid contribution -0.609 1.142 0.763 1.502 sum 16.841 -10.443 -2.487 19.971 Atomic orbital electron populations 1.22272 0.99166 0.99793 1.00477 1.20875 0.92346 0.86442 0.98810 1.44126 1.74114 1.10318 1.02648 1.19341 1.41699 0.89365 0.87987 0.91780 1.25567 0.99707 0.98741 0.99213 1.70154 1.44229 1.08028 1.33648 0.85492 0.77307 0.78924 0.80334 1.19206 1.21933 1.23233 1.20360 0.91580 0.95549 0.84935 0.90793 1.21969 0.99505 0.99671 0.98121 1.21868 0.86978 0.99858 0.92512 1.45872 1.17055 1.52883 1.18822 1.20599 0.83926 0.77612 0.87422 1.90647 1.81932 1.52147 1.22374 1.21093 0.92300 0.99627 0.99197 0.86341 1.21734 1.02067 0.93447 1.02299 1.22328 0.86006 0.99087 0.91085 1.85955 1.29835 1.67583 1.40143 1.19343 0.88625 0.92597 0.93159 1.21497 1.02362 1.05245 0.95273 1.21283 0.92794 0.95735 1.00824 1.21442 0.99763 1.02655 0.94205 1.21343 0.97445 0.95108 0.96139 1.20732 0.93698 1.03460 1.00606 0.95178 0.94016 0.92394 0.93320 0.94176 0.94406 0.94038 0.93202 0.93780 0.92891 0.92600 0.75078 0.91349 0.89736 0.92388 0.91847 0.91658 0.85743 0.84017 0.83361 0.82658 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.80 10.02 71.98 0.72 -5.08 16 2 C 0.14 5.35 5.73 86.38 0.49 5.84 16 3 N -0.59 -25.38 1.84 -678.05 -1.25 -26.63 16 4 C -0.25 -12.16 9.50 84.03 0.80 -11.36 16 5 H 0.06 3.08 7.90 -2.91 -0.02 3.06 16 6 C -0.04 -1.76 4.84 84.86 0.41 -1.35 16 7 N -0.92 -48.34 10.24 21.65 0.22 -48.11 16 8 Si 0.95 41.23 29.59 68.60 2.03 43.26 16 9 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 10 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 12 C 0.18 7.60 1.93 44.99 0.09 7.69 16 13 H 0.07 3.56 5.93 -2.39 -0.01 3.55 16 14 C -0.13 -5.38 8.25 71.98 0.59 -4.78 16 15 C 0.11 4.15 4.85 86.38 0.42 4.57 16 16 N -0.70 -23.55 5.28 -463.05 -2.45 -25.99 16 17 C 0.52 16.70 7.15 87.66 0.63 17.33 16 18 O -0.59 -22.39 15.92 -3.04 -0.05 -22.44 16 19 C -0.10 -2.59 2.96 -11.54 -0.03 -2.62 16 20 H 0.12 2.80 8.14 -2.38 -0.02 2.78 16 21 C -0.14 -3.19 8.99 71.98 0.65 -2.54 16 22 C 0.09 2.30 3.47 71.98 0.25 2.55 16 23 O -0.32 -8.08 9.67 -92.46 -0.89 -8.97 16 24 C 0.11 2.54 6.69 22.51 0.15 2.69 16 25 C -0.23 -4.96 9.04 22.37 0.20 -4.76 16 26 C -0.09 -1.55 10.04 22.25 0.22 -1.33 16 27 C -0.16 -2.40 10.04 22.28 0.22 -2.18 16 28 C -0.08 -1.25 10.04 22.26 0.22 -1.02 16 29 C -0.17 -3.25 9.99 22.37 0.22 -3.03 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.04 1.58 6.03 -2.39 -0.01 1.57 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.05 1.74 6.35 -2.39 -0.02 1.73 16 34 H 0.04 1.49 8.09 -2.39 -0.02 1.47 16 35 H 0.25 12.93 8.31 -92.71 -0.77 12.16 16 36 H 0.04 1.54 6.50 -2.39 -0.02 1.52 16 37 H 0.05 2.33 7.22 -2.39 -0.02 2.31 16 38 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.05 1.96 6.76 -2.38 -0.02 1.94 16 40 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 41 H 0.41 14.11 7.50 -92.71 -0.70 13.41 16 42 H 0.07 1.60 7.56 -2.39 -0.02 1.58 16 43 H 0.08 1.76 7.82 -2.38 -0.02 1.74 16 44 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.06 1.69 7.46 -2.39 -0.02 1.68 16 46 H 0.07 1.69 7.67 -2.39 -0.02 1.67 16 47 H 0.12 2.78 6.30 -2.91 -0.02 2.76 16 48 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 49 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 50 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 51 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -58.23 405.89 4.10 -54.14 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: 0.22 Total: 34.13 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 6.26 Total: 0.63 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -3.47 Total: -100.74 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -0.94 Total: -31.41 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -58.23 4.10 -54.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156913020.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.373 kcal (2) G-P(sol) polarization free energy of solvation -58.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds