Wall clock time and date at job start Tue Mar 31 2020 19:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.47251 * 2 1 4 4 C 1.36929 * 119.99904 * 84.26818 * 3 2 1 5 5 H 1.08004 * 120.00490 * 28.85000 * 4 3 2 6 6 C 1.38817 * 120.00152 * 209.11957 * 4 3 2 7 7 N 1.31616 * 119.99704 * 18.62699 * 6 4 3 8 8 Si 1.86799 * 120.00010 * 198.62129 * 6 4 3 9 9 H 1.48500 * 109.46940 * 60.00497 * 8 6 4 10 10 H 1.48504 * 109.46869 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47554 * 300.00380 * 8 6 4 12 12 C 1.46498 * 119.99936 * 264.27605 * 3 2 1 13 13 H 1.08995 * 109.47016 * 183.52300 * 12 3 2 14 14 C 1.53004 * 109.47324 * 63.52334 * 12 3 2 15 15 C 1.52998 * 109.47019 * 303.52177 * 12 3 2 16 16 N 1.46504 * 109.47148 * 305.00208 * 15 12 3 17 17 C 1.34778 * 119.99980 * 179.97438 * 16 15 12 18 18 O 1.21286 * 119.99873 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.99716 * 179.97438 * 17 16 15 20 20 C 1.53008 * 109.46913 * 180.02562 * 19 17 16 21 21 O 1.42901 * 109.47109 * 179.97438 * 20 19 17 22 22 C 1.42893 * 114.00019 * 179.97438 * 21 20 19 23 23 C 1.50695 * 109.47484 * 180.02562 * 22 21 20 24 24 C 1.38238 * 120.00091 * 269.73014 * 23 22 21 25 25 C 1.38236 * 120.00187 * 179.76180 * 24 23 22 26 26 C 1.38238 * 119.99613 * 0.50487 * 25 24 23 27 27 C 1.38238 * 120.00040 * 359.75260 * 26 25 24 28 28 C 1.38235 * 120.00283 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47181 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47614 * 299.99974 * 1 2 3 31 31 H 1.09001 * 109.47226 * 60.00437 * 1 2 3 32 32 H 1.09000 * 109.47614 * 240.00025 * 2 1 3 33 33 H 1.09001 * 109.47226 * 119.99563 * 2 1 3 34 34 H 0.97001 * 120.00265 * 179.97438 * 7 6 4 35 35 H 1.09005 * 109.47071 * 300.00031 * 14 12 3 36 36 H 1.08997 * 109.46949 * 59.99619 * 14 12 3 37 37 H 1.08991 * 109.47312 * 180.02562 * 14 12 3 38 38 H 1.09000 * 109.47346 * 65.00265 * 15 12 3 39 39 H 1.08999 * 109.47484 * 184.99926 * 15 12 3 40 40 H 0.96999 * 119.99841 * 359.97438 * 16 15 12 41 41 H 1.08997 * 109.47095 * 299.99701 * 19 17 16 42 42 H 1.08995 * 109.47463 * 60.00268 * 19 17 16 43 43 H 1.08998 * 109.46758 * 300.00181 * 20 19 17 44 44 H 1.09000 * 109.46861 * 60.00189 * 20 19 17 45 45 H 1.09001 * 109.47496 * 300.00306 * 22 21 20 46 46 H 1.09006 * 109.47346 * 59.99711 * 22 21 20 47 47 H 1.08000 * 119.99731 * 359.97438 * 24 23 22 48 48 H 1.07989 * 119.99979 * 180.23233 * 25 24 23 49 49 H 1.07998 * 119.99782 * 179.71982 * 26 25 24 50 50 H 1.08002 * 119.99316 * 179.97438 * 27 26 25 51 51 H 1.07991 * 120.00178 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1349 2.0662 1.1799 5 1 2.3292 1.5314 2.0979 6 6 1.9978 3.4475 1.1971 7 7 1.4072 4.0627 0.1946 8 14 2.6514 4.4330 2.6432 9 1 4.1152 4.2162 2.7687 10 1 2.3816 5.8763 2.4209 11 1 1.9767 3.9899 3.8896 12 6 2.3818 2.0297 -1.2624 13 1 2.7791 3.0240 -1.0589 14 6 1.1416 2.1479 -2.1507 15 6 3.4439 1.1928 -1.9782 16 7 4.5830 0.9791 -1.0820 17 6 5.6453 0.2634 -1.5013 18 8 5.6585 -0.2033 -2.6207 19 6 6.8172 0.0442 -0.5796 20 6 7.8794 -0.7928 -1.2954 21 8 8.9910 -1.0003 -0.4217 22 6 10.0450 -1.7756 -0.9960 23 6 11.1584 -1.9312 0.0074 24 6 12.1835 -1.0049 0.0517 25 6 13.2023 -1.1450 0.9754 26 6 13.2015 -2.2172 1.8480 27 6 12.1792 -3.1464 1.8002 28 6 11.1574 -3.0033 0.8802 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.3111 5.0278 0.2068 35 1 0.7443 1.1535 -2.3542 36 1 0.3850 2.7440 -1.6406 37 1 1.4121 2.6299 -3.0900 38 1 3.0183 0.2299 -2.2607 39 1 3.7788 1.7184 -2.8725 40 1 4.5726 1.3528 -0.1869 41 1 7.2431 1.0072 -0.2980 42 1 6.4827 -0.4808 0.3151 43 1 7.4537 -1.7558 -1.5775 44 1 8.2140 -0.2674 -2.1899 45 1 9.6642 -2.7591 -1.2712 46 1 10.4242 -1.2712 -1.8849 47 1 12.1866 -0.1698 -0.6332 48 1 14.0012 -0.4192 1.0124 49 1 13.9998 -2.3291 2.5667 50 1 12.1788 -3.9843 2.4817 51 1 10.3590 -3.7294 0.8426 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156982617.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:51 Heat of formation + Delta-G solvation = -47.265554 kcal Electronic energy + Delta-G solvation = -28349.486872 eV Core-core repulsion = 24442.242555 eV Total energy + Delta-G solvation = -3907.244317 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.67148 -39.31619 -37.71958 -36.89020 -33.75064 -32.72524 -31.88334 -31.27724 -31.16858 -30.42605 -28.32976 -26.43359 -25.48631 -23.99576 -22.96418 -22.84998 -21.62002 -21.57607 -19.78380 -19.21684 -17.40665 -17.05722 -16.87088 -16.42992 -15.79193 -15.69771 -15.39580 -15.33320 -14.71115 -14.58354 -14.16351 -14.14991 -13.67499 -13.59674 -13.19907 -13.01532 -12.84203 -12.66727 -12.60874 -12.32510 -11.90718 -11.62705 -11.47474 -11.44599 -11.37520 -11.28983 -11.18728 -11.14257 -11.04477 -10.80075 -10.48624 -10.32906 -9.91755 -9.72658 -9.60561 -9.51387 -9.46176 -9.18335 -9.10155 -8.54361 -8.41498 -6.75405 -5.88229 -3.31687 0.99419 1.13934 3.03452 3.18241 3.32749 3.39738 3.41011 3.63668 4.14785 4.42722 4.54936 4.61625 4.74545 4.84778 4.96977 4.99068 5.10037 5.14829 5.26174 5.27611 5.35626 5.38511 5.39983 5.60949 5.69703 5.76873 5.84512 5.87168 5.91398 6.10038 6.14759 6.17211 6.23013 6.32915 6.33465 6.44078 6.49401 6.55134 6.69572 6.70947 6.73925 6.77838 6.96561 7.05094 7.06735 7.26230 7.51082 7.60434 7.76821 8.11947 8.39466 8.69871 9.14975 9.77461 10.32027 11.18860 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013262 B = 0.002199 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.728523 B =12732.190089 C =13730.352342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.142 3.858 3 N -0.583 5.583 4 C -0.259 4.259 5 H 0.066 0.934 6 C 0.007 3.993 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.283 1.283 10 H -0.292 1.292 11 H -0.284 1.284 12 C 0.177 3.823 13 H 0.103 0.897 14 C -0.143 4.143 15 C 0.101 3.899 16 N -0.701 5.701 17 C 0.511 3.489 18 O -0.565 6.565 19 C -0.140 4.140 20 C 0.080 3.920 21 O -0.384 6.384 22 C 0.104 3.896 23 C -0.088 4.088 24 C -0.099 4.099 25 C -0.124 4.124 26 C -0.117 4.117 27 C -0.124 4.124 28 C -0.099 4.099 29 H 0.027 0.973 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.254 0.746 35 H 0.029 0.971 36 H 0.080 0.920 37 H 0.029 0.971 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.412 0.588 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.123 0.877 48 H 0.123 0.877 49 H 0.121 0.879 50 H 0.123 0.877 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.047 -10.666 -0.844 20.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.016 3.984 3 N -0.305 5.305 4 C -0.389 4.389 5 H 0.084 0.916 6 C -0.192 4.192 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.210 1.210 10 H -0.218 1.218 11 H -0.210 1.210 12 C 0.069 3.931 13 H 0.121 0.879 14 C -0.203 4.203 15 C -0.024 4.024 16 N -0.351 5.351 17 C 0.296 3.704 18 O -0.445 6.445 19 C -0.180 4.180 20 C 0.003 3.997 21 O -0.304 6.304 22 C 0.027 3.973 23 C -0.088 4.088 24 C -0.117 4.117 25 C -0.142 4.142 26 C -0.135 4.135 27 C -0.142 4.142 28 C -0.117 4.117 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.099 0.901 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.249 0.751 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.141 0.859 48 H 0.141 0.859 49 H 0.139 0.861 50 H 0.141 0.859 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 17.994 -10.725 -1.460 20.999 hybrid contribution 0.040 0.740 0.978 1.227 sum 18.035 -9.986 -0.482 20.620 Atomic orbital electron populations 1.22396 0.99808 0.98347 1.02090 1.20793 0.91918 0.87615 0.98092 1.44003 1.73783 1.09725 1.02950 1.19112 1.43240 0.89238 0.87307 0.91634 1.25047 0.98882 0.97875 0.97411 1.70002 1.42689 1.08649 1.32289 0.86451 0.79112 0.79168 0.82493 1.20974 1.21772 1.21000 1.20521 0.90939 0.96646 0.84951 0.87949 1.22124 1.00608 0.99527 0.98009 1.22120 0.87204 1.00448 0.92643 1.45944 1.17291 1.52799 1.19069 1.20284 0.83883 0.78583 0.87641 1.90655 1.81474 1.51225 1.21161 1.21451 0.94037 1.02748 0.99751 1.22137 0.85920 0.99421 0.92176 1.87899 1.28181 1.73242 1.41099 1.21270 0.86483 0.95599 0.93907 1.19653 0.95448 0.95772 0.97968 1.21102 0.93926 0.98075 0.98592 1.21159 0.98819 0.98270 0.95994 1.21204 0.98614 0.94772 0.98891 1.21162 0.94678 0.99513 0.98883 1.21102 0.98193 0.97697 0.94674 0.95373 0.92906 0.93163 0.94459 0.94580 0.93545 0.95196 0.90095 0.95194 0.92894 0.92792 0.75120 0.88265 0.88142 0.92436 0.92471 0.92352 0.92361 0.85868 0.85923 0.86064 0.85910 0.85847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.21 10.02 37.15 0.37 -2.83 16 2 C 0.14 2.83 5.73 -4.04 -0.02 2.80 16 3 N -0.58 -12.85 1.84 -165.66 -0.30 -13.15 16 4 C -0.26 -6.34 9.50 -15.06 -0.14 -6.49 16 5 H 0.07 1.61 7.90 -52.48 -0.41 1.20 16 6 C 0.01 0.19 4.84 -17.43 -0.08 0.10 16 7 N -0.89 -23.42 10.24 55.49 0.57 -22.85 16 8 Si 0.90 20.23 29.59 -169.99 -5.03 15.20 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 12 C 0.18 3.74 1.93 -67.93 -0.13 3.61 16 13 H 0.10 2.47 5.93 -51.93 -0.31 2.16 16 14 C -0.14 -2.94 8.25 37.16 0.31 -2.63 16 15 C 0.10 1.92 4.86 -4.04 -0.02 1.90 16 16 N -0.70 -12.40 5.39 -60.29 -0.32 -12.73 16 17 C 0.51 8.60 7.83 -10.99 -0.09 8.51 16 18 O -0.56 -11.10 15.98 5.55 0.09 -11.01 16 19 C -0.14 -1.88 6.07 -27.88 -0.17 -2.05 16 20 C 0.08 1.03 5.23 37.16 0.19 1.23 16 21 O -0.38 -4.90 10.33 -35.23 -0.36 -5.26 16 22 C 0.10 1.06 6.06 36.00 0.22 1.28 16 23 C -0.09 -0.90 5.51 -104.62 -0.58 -1.48 16 24 C -0.10 -0.93 9.70 -39.58 -0.38 -1.32 16 25 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 26 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 27 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 28 C -0.10 -0.93 9.70 -39.58 -0.38 -1.31 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.05 0.99 6.03 -51.93 -0.31 0.68 16 32 H 0.04 0.71 6.35 -51.93 -0.33 0.38 16 33 H 0.04 0.71 8.09 -51.93 -0.42 0.29 16 34 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 35 H 0.03 0.57 6.50 -51.93 -0.34 0.23 16 36 H 0.08 1.89 7.22 -51.93 -0.37 1.52 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 1.03 6.76 -51.93 -0.35 0.68 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.41 7.39 8.08 -40.82 -0.33 7.06 16 41 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.06 0.75 8.10 -51.93 -0.42 0.32 16 44 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 45 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 46 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 47 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 48 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 49 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 50 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 51 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 412.73 15.07 6.22 6.22 Total: -1.00 -28.31 412.73 -9.90 -38.21 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -8.65 Total: 8.26 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -2.10 Total: -2.88 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.06 Total: -48.73 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.28 Total: -16.28 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.20 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -28.31 -9.90 -38.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156982617.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.055 kcal (2) G-P(sol) polarization free energy of solvation -28.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds