Wall clock time and date at job start Tue Mar 31 2020 19:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.47251 * 2 1 4 4 C 1.36929 * 119.99904 * 84.26818 * 3 2 1 5 5 H 1.08004 * 120.00490 * 28.85000 * 4 3 2 6 6 C 1.38817 * 120.00152 * 209.11957 * 4 3 2 7 7 N 1.31616 * 119.99704 * 18.62699 * 6 4 3 8 8 Si 1.86799 * 120.00010 * 198.62129 * 6 4 3 9 9 H 1.48500 * 109.46940 * 60.00497 * 8 6 4 10 10 H 1.48504 * 109.46869 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47554 * 300.00380 * 8 6 4 12 12 C 1.46498 * 119.99936 * 264.27605 * 3 2 1 13 13 H 1.08995 * 109.47016 * 183.52300 * 12 3 2 14 14 C 1.53004 * 109.47324 * 63.52334 * 12 3 2 15 15 C 1.52998 * 109.47019 * 303.52177 * 12 3 2 16 16 N 1.46504 * 109.47148 * 305.00208 * 15 12 3 17 17 C 1.34778 * 119.99980 * 179.97438 * 16 15 12 18 18 O 1.21286 * 119.99873 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.99716 * 179.97438 * 17 16 15 20 20 C 1.53008 * 109.46913 * 180.02562 * 19 17 16 21 21 O 1.42901 * 109.47109 * 179.97438 * 20 19 17 22 22 C 1.42893 * 114.00019 * 179.97438 * 21 20 19 23 23 C 1.50695 * 109.47484 * 180.02562 * 22 21 20 24 24 C 1.38238 * 120.00091 * 269.73014 * 23 22 21 25 25 C 1.38236 * 120.00187 * 179.76180 * 24 23 22 26 26 C 1.38238 * 119.99613 * 0.50487 * 25 24 23 27 27 C 1.38238 * 120.00040 * 359.75260 * 26 25 24 28 28 C 1.38235 * 120.00283 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47181 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47614 * 299.99974 * 1 2 3 31 31 H 1.09001 * 109.47226 * 60.00437 * 1 2 3 32 32 H 1.09000 * 109.47614 * 240.00025 * 2 1 3 33 33 H 1.09001 * 109.47226 * 119.99563 * 2 1 3 34 34 H 0.97001 * 120.00265 * 179.97438 * 7 6 4 35 35 H 1.09005 * 109.47071 * 300.00031 * 14 12 3 36 36 H 1.08997 * 109.46949 * 59.99619 * 14 12 3 37 37 H 1.08991 * 109.47312 * 180.02562 * 14 12 3 38 38 H 1.09000 * 109.47346 * 65.00265 * 15 12 3 39 39 H 1.08999 * 109.47484 * 184.99926 * 15 12 3 40 40 H 0.96999 * 119.99841 * 359.97438 * 16 15 12 41 41 H 1.08997 * 109.47095 * 299.99701 * 19 17 16 42 42 H 1.08995 * 109.47463 * 60.00268 * 19 17 16 43 43 H 1.08998 * 109.46758 * 300.00181 * 20 19 17 44 44 H 1.09000 * 109.46861 * 60.00189 * 20 19 17 45 45 H 1.09001 * 109.47496 * 300.00306 * 22 21 20 46 46 H 1.09006 * 109.47346 * 59.99711 * 22 21 20 47 47 H 1.08000 * 119.99731 * 359.97438 * 24 23 22 48 48 H 1.07989 * 119.99979 * 180.23233 * 25 24 23 49 49 H 1.07998 * 119.99782 * 179.71982 * 26 25 24 50 50 H 1.08002 * 119.99316 * 179.97438 * 27 26 25 51 51 H 1.07991 * 120.00178 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1349 2.0662 1.1799 5 1 2.3292 1.5314 2.0979 6 6 1.9978 3.4475 1.1971 7 7 1.4072 4.0627 0.1946 8 14 2.6514 4.4330 2.6432 9 1 4.1152 4.2162 2.7687 10 1 2.3816 5.8763 2.4209 11 1 1.9767 3.9899 3.8896 12 6 2.3818 2.0297 -1.2624 13 1 2.7791 3.0240 -1.0589 14 6 1.1416 2.1479 -2.1507 15 6 3.4439 1.1928 -1.9782 16 7 4.5830 0.9791 -1.0820 17 6 5.6453 0.2634 -1.5013 18 8 5.6585 -0.2033 -2.6207 19 6 6.8172 0.0442 -0.5796 20 6 7.8794 -0.7928 -1.2954 21 8 8.9910 -1.0003 -0.4217 22 6 10.0450 -1.7756 -0.9960 23 6 11.1584 -1.9312 0.0074 24 6 12.1835 -1.0049 0.0517 25 6 13.2023 -1.1450 0.9754 26 6 13.2015 -2.2172 1.8480 27 6 12.1792 -3.1464 1.8002 28 6 11.1574 -3.0033 0.8802 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.3111 5.0278 0.2068 35 1 0.7443 1.1535 -2.3542 36 1 0.3850 2.7440 -1.6406 37 1 1.4121 2.6299 -3.0900 38 1 3.0183 0.2299 -2.2607 39 1 3.7788 1.7184 -2.8725 40 1 4.5726 1.3528 -0.1869 41 1 7.2431 1.0072 -0.2980 42 1 6.4827 -0.4808 0.3151 43 1 7.4537 -1.7558 -1.5775 44 1 8.2140 -0.2674 -2.1899 45 1 9.6642 -2.7591 -1.2712 46 1 10.4242 -1.2712 -1.8849 47 1 12.1866 -0.1698 -0.6332 48 1 14.0012 -0.4192 1.0124 49 1 13.9998 -2.3291 2.5667 50 1 12.1788 -3.9843 2.4817 51 1 10.3590 -3.7294 0.8426 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156982617.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:50 Heat of formation + Delta-G solvation = -61.289428 kcal Electronic energy + Delta-G solvation = -28350.094992 eV Core-core repulsion = 24442.242555 eV Total energy + Delta-G solvation = -3907.852438 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.80553 -40.24969 -38.80426 -38.38941 -35.29692 -33.74781 -33.57516 -32.57135 -31.79412 -31.67117 -30.08591 -27.49286 -26.67754 -25.78409 -24.15796 -23.48173 -23.25352 -22.26394 -21.19929 -20.85741 -18.85258 -18.29191 -17.75451 -17.40452 -17.07225 -16.87080 -16.51761 -16.40936 -16.18647 -16.02622 -15.43576 -15.27875 -14.94375 -14.61669 -14.34248 -14.27232 -14.12373 -13.78293 -13.63625 -13.54559 -13.40087 -13.23719 -13.05510 -12.96044 -12.82926 -12.55726 -12.38756 -12.34156 -12.16122 -12.11866 -11.89164 -11.86084 -11.70730 -11.27175 -11.23875 -10.88807 -10.65174 -10.41400 -9.90482 -9.82662 -9.76988 -8.57844 -7.79314 -5.23120 0.32646 0.49626 1.52950 1.56400 1.60402 1.68490 2.14264 2.57695 2.74703 3.18368 3.35697 3.66290 3.79900 3.87962 3.90407 4.05491 4.14561 4.22029 4.28524 4.33486 4.33812 4.42670 4.47826 4.53362 4.56379 4.64730 4.75095 4.76186 4.81838 4.84972 4.87075 4.90975 4.92449 5.04813 5.07143 5.11903 5.15429 5.18634 5.34960 5.54545 5.55514 5.60786 5.61762 5.66464 5.76927 5.78435 5.94059 6.08537 6.14995 6.50196 6.70838 7.25777 7.31487 7.96199 8.45830 9.25343 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013262 B = 0.002199 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.728523 B =12732.190089 C =13730.352342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.141 3.859 3 N -0.590 5.590 4 C -0.256 4.256 5 H 0.064 0.936 6 C -0.036 4.036 7 N -0.916 5.916 8 Si 0.951 3.049 9 H -0.276 1.276 10 H -0.303 1.303 11 H -0.286 1.286 12 C 0.183 3.817 13 H 0.073 0.927 14 C -0.133 4.133 15 C 0.114 3.886 16 N -0.702 5.702 17 C 0.513 3.487 18 O -0.592 6.592 19 C -0.131 4.131 20 C 0.086 3.914 21 O -0.397 6.397 22 C 0.100 3.900 23 C -0.108 4.108 24 C -0.114 4.114 25 C -0.132 4.132 26 C -0.121 4.121 27 C -0.131 4.131 28 C -0.114 4.114 29 H 0.058 0.942 30 H 0.029 0.971 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.040 0.960 34 H 0.247 0.753 35 H 0.041 0.959 36 H 0.049 0.951 37 H 0.043 0.957 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.412 0.588 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.129 0.871 48 H 0.142 0.858 49 H 0.145 0.855 50 H 0.143 0.857 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.547 -11.851 -0.152 22.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.016 3.984 3 N -0.312 5.312 4 C -0.387 4.387 5 H 0.082 0.918 6 C -0.233 4.233 7 N -0.560 5.560 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.230 1.230 11 H -0.212 1.212 12 C 0.075 3.925 13 H 0.091 0.909 14 C -0.193 4.193 15 C -0.012 4.012 16 N -0.352 5.352 17 C 0.301 3.699 18 O -0.474 6.474 19 C -0.171 4.171 20 C 0.010 3.990 21 O -0.317 6.317 22 C 0.024 3.976 23 C -0.108 4.108 24 C -0.132 4.132 25 C -0.149 4.149 26 C -0.139 4.139 27 C -0.149 4.149 28 C -0.132 4.132 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.248 0.752 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.147 0.853 48 H 0.160 0.840 49 H 0.163 0.837 50 H 0.160 0.840 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 19.509 -11.935 -0.758 22.882 hybrid contribution -0.392 1.038 0.770 1.350 sum 19.117 -10.897 0.012 22.004 Atomic orbital electron populations 1.22273 0.99178 0.99802 1.00453 1.20873 0.92332 0.86418 0.98810 1.44101 1.74125 1.10329 1.02613 1.19277 1.41947 0.89410 0.88030 0.91830 1.25578 0.99666 0.98740 0.99269 1.70143 1.44099 1.08097 1.33705 0.85602 0.78853 0.77269 0.80148 1.20155 1.22969 1.21203 1.20363 0.91608 0.95549 0.84944 0.90867 1.21970 0.99505 0.99670 0.98111 1.21840 0.87060 0.99772 0.92501 1.45935 1.17325 1.53116 1.18815 1.20769 0.84132 0.77449 0.87585 1.90643 1.82003 1.52228 1.22565 1.21399 0.92785 1.03734 0.99198 1.22010 0.85969 0.99083 0.91980 1.87869 1.28546 1.73806 1.41497 1.21419 0.86013 0.95820 0.94320 1.19782 0.95815 0.96605 0.98647 1.21315 0.94282 0.98324 0.99271 1.21470 0.99003 0.98862 0.95605 1.21562 0.99021 0.94294 0.99011 1.21473 0.94375 1.00237 0.98835 1.21315 0.98965 0.97851 0.95028 0.92355 0.95221 0.94021 0.93301 0.94184 0.94392 0.94039 0.93217 0.93775 0.92963 0.92703 0.75161 0.87023 0.86971 0.92726 0.92753 0.91495 0.91509 0.85257 0.83984 0.83743 0.83958 0.85231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.84 10.02 71.98 0.72 -5.12 16 2 C 0.14 5.41 5.73 86.38 0.49 5.91 16 3 N -0.59 -25.67 1.84 -678.03 -1.25 -26.92 16 4 C -0.26 -12.44 9.50 84.04 0.80 -11.64 16 5 H 0.06 3.08 7.90 -2.91 -0.02 3.06 16 6 C -0.04 -1.79 4.84 84.86 0.41 -1.38 16 7 N -0.92 -48.77 10.24 21.65 0.22 -48.55 16 8 Si 0.95 41.71 29.59 68.60 2.03 43.74 16 9 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 10 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 11 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 12 C 0.18 7.68 1.93 44.99 0.09 7.76 16 13 H 0.07 3.57 5.93 -2.39 -0.01 3.55 16 14 C -0.13 -5.42 8.25 71.98 0.59 -4.83 16 15 C 0.11 4.23 4.86 86.38 0.42 4.65 16 16 N -0.70 -24.12 5.39 -463.05 -2.49 -26.61 16 17 C 0.51 16.66 7.83 87.66 0.69 17.35 16 18 O -0.59 -22.70 15.98 -3.05 -0.05 -22.75 16 19 C -0.13 -3.33 6.07 29.85 0.18 -3.15 16 20 C 0.09 2.12 5.23 71.98 0.38 2.50 16 21 O -0.40 -9.68 10.33 -148.98 -1.54 -11.22 16 22 C 0.10 1.97 6.06 71.23 0.43 2.40 16 23 C -0.11 -2.13 5.51 -19.87 -0.11 -2.24 16 24 C -0.11 -2.04 9.70 22.27 0.22 -1.82 16 25 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 26 C -0.12 -1.69 10.05 22.27 0.22 -1.47 16 27 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 28 C -0.11 -2.03 9.70 22.27 0.22 -1.82 16 29 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.04 1.59 6.03 -2.39 -0.01 1.58 16 32 H 0.05 1.76 6.35 -2.39 -0.02 1.75 16 33 H 0.04 1.50 8.09 -2.39 -0.02 1.48 16 34 H 0.25 13.12 8.31 -92.71 -0.77 12.34 16 35 H 0.04 1.55 6.50 -2.38 -0.02 1.54 16 36 H 0.05 2.34 7.22 -2.39 -0.02 2.32 16 37 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.05 1.95 6.76 -2.39 -0.02 1.94 16 39 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.41 14.37 8.08 -92.71 -0.75 13.62 16 41 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 42 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.05 1.36 8.10 -2.39 -0.02 1.34 16 44 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 45 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 46 H 0.07 1.16 8.08 -2.38 -0.02 1.14 16 47 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 48 H 0.14 1.48 8.06 -2.92 -0.02 1.45 16 49 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 50 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 51 H 0.13 2.01 8.06 -2.92 -0.02 1.99 16 Total: -1.00 -59.76 412.73 3.27 -56.49 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: 0.15 Total: 32.24 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 6.19 Total: 3.59 kcal Atomic # 7 Polarization: -98.56 SS G_CDS: -3.52 Total: -102.08 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -1.59 Total: -33.97 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -59.76 3.27 -56.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156982617.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.803 kcal (2) G-P(sol) polarization free energy of solvation -59.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds