Wall clock time and date at job start Tue Mar 31 2020 19:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47341 * 2 1 4 4 C 1.36937 * 120.00105 * 84.26952 * 3 2 1 5 5 H 1.07999 * 119.99596 * 28.84359 * 4 3 2 6 6 C 1.38809 * 120.00014 * 209.11796 * 4 3 2 7 7 N 1.31625 * 120.00056 * 18.62872 * 6 4 3 8 8 Si 1.86790 * 119.99961 * 198.63301 * 6 4 3 9 9 H 1.48500 * 109.47464 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47606 * 119.99855 * 8 6 4 11 11 H 1.48508 * 109.47104 * 240.00003 * 8 6 4 12 12 C 1.46502 * 119.99925 * 264.27268 * 3 2 1 13 13 H 1.08993 * 109.47136 * 183.52086 * 12 3 2 14 14 C 1.53002 * 109.46981 * 63.52079 * 12 3 2 15 15 C 1.52999 * 109.47234 * 303.52494 * 12 3 2 16 16 N 1.46498 * 109.46799 * 304.99610 * 15 12 3 17 17 C 1.34782 * 120.00013 * 180.02562 * 16 15 12 18 18 O 1.21283 * 119.99828 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.99847 * 180.02562 * 17 16 15 20 20 H 1.08997 * 109.47298 * 304.99733 * 19 17 16 21 21 C 1.52997 * 109.47365 * 64.99919 * 19 17 16 22 22 C 1.50705 * 109.47273 * 184.99705 * 21 19 17 23 23 C 1.38232 * 120.00056 * 269.73067 * 22 21 19 24 24 C 1.38239 * 120.00297 * 179.76572 * 23 22 21 25 25 C 1.38237 * 119.99080 * 0.50434 * 24 23 22 26 26 C 1.38231 * 120.00727 * 359.74772 * 25 24 23 27 27 C 1.38232 * 119.99743 * 89.99833 * 22 21 19 28 28 O 1.42902 * 109.47006 * 184.99685 * 19 17 16 29 29 C 1.42901 * 114.00088 * 149.99644 * 28 19 17 30 30 H 1.09008 * 109.46781 * 60.00456 * 1 2 3 31 31 H 1.08999 * 109.47070 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47250 * 300.00205 * 1 2 3 33 33 H 1.09001 * 109.47542 * 239.99731 * 2 1 3 34 34 H 1.08999 * 109.47191 * 119.99968 * 2 1 3 35 35 H 0.96994 * 119.99828 * 179.97438 * 7 6 4 36 36 H 1.09003 * 109.47217 * 300.00057 * 14 12 3 37 37 H 1.08999 * 109.46882 * 60.00182 * 14 12 3 38 38 H 1.08999 * 109.47288 * 179.97438 * 14 12 3 39 39 H 1.09003 * 109.47295 * 64.99783 * 15 12 3 40 40 H 1.08998 * 109.47332 * 185.00247 * 15 12 3 41 41 H 0.97007 * 120.00400 * 0.02562 * 16 15 12 42 42 H 1.08997 * 109.47565 * 304.99821 * 21 19 17 43 43 H 1.09002 * 109.47286 * 65.00149 * 21 19 17 44 44 H 1.08004 * 120.00312 * 359.97438 * 23 22 21 45 45 H 1.07996 * 120.00454 * 180.22996 * 24 23 22 46 46 H 1.08007 * 119.99322 * 179.72613 * 25 24 23 47 47 H 1.08003 * 120.00418 * 179.97438 * 26 25 24 48 48 H 1.07997 * 120.00394 * 0.02562 * 27 22 21 49 49 H 1.09002 * 109.47388 * 300.00612 * 29 28 19 50 50 H 1.09001 * 109.46926 * 60.00160 * 29 28 19 51 51 H 1.08995 * 109.47435 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1350 2.0663 1.1800 5 1 2.3291 1.5314 2.0979 6 6 1.9980 3.4475 1.1971 7 7 1.4073 4.0627 0.1946 8 14 2.6519 4.4330 2.6429 9 1 3.2683 3.5121 3.6314 10 1 3.6731 5.3983 2.1627 11 1 1.5347 5.1722 3.2838 12 6 2.3819 2.0296 -1.2624 13 1 2.7791 3.0240 -1.0589 14 6 1.1418 2.1478 -2.1507 15 6 3.4440 1.1927 -1.9783 16 7 4.5831 0.9792 -1.0821 17 6 5.6459 0.2643 -1.5016 18 8 5.6594 -0.2017 -2.6213 19 6 6.8173 0.0442 -0.5796 20 1 7.1873 1.0065 -0.2259 21 6 6.3738 -0.8020 0.6155 22 6 7.5108 -0.9194 1.5976 23 6 8.4095 -1.9645 1.4928 24 6 9.4553 -2.0695 2.3907 25 6 9.5963 -1.1351 3.3997 26 6 8.6946 -0.0929 3.5076 27 6 7.6519 0.0149 2.6065 28 8 7.8575 -0.6360 -1.2849 29 6 9.1733 -0.3236 -0.8234 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.3113 5.0278 0.2068 36 1 0.7445 1.1533 -2.3542 37 1 0.3851 2.7440 -1.6407 38 1 1.4121 2.6306 -3.0898 39 1 3.0184 0.2298 -2.2607 40 1 3.7789 1.7183 -2.8725 41 1 4.5724 1.3522 -0.1867 42 1 5.5218 -0.3265 1.1012 43 1 6.0874 -1.7957 0.2708 44 1 8.2965 -2.6973 0.7074 45 1 10.1595 -2.8840 2.3067 46 1 10.4108 -1.2197 4.1039 47 1 8.8046 0.6368 4.2962 48 1 6.9470 0.8288 2.6912 49 1 9.3538 0.7454 -0.9364 50 1 9.2645 -0.5983 0.2275 51 1 9.9054 -0.8792 -1.4093 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156994628.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:02 Heat of formation + Delta-G solvation = -36.473799 kcal Electronic energy + Delta-G solvation = -30357.602642 eV Core-core repulsion = 26450.826291 eV Total energy + Delta-G solvation = -3906.776351 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.18006 -39.05189 -37.48240 -36.68638 -33.88826 -33.15088 -31.89478 -31.08833 -30.91162 -29.51510 -28.34117 -26.34226 -25.74983 -24.12889 -23.59207 -22.69313 -21.62705 -21.19450 -19.87353 -19.31477 -17.35083 -16.96653 -16.84441 -16.54930 -15.81341 -15.15089 -15.03336 -14.99317 -14.75553 -14.69610 -14.10552 -13.96339 -13.53428 -13.50303 -13.23074 -12.83450 -12.78848 -12.71478 -12.52547 -12.30794 -11.98651 -11.77765 -11.55856 -11.43626 -11.32554 -11.23942 -11.18346 -11.06009 -10.91405 -10.85403 -10.48551 -10.31268 -10.01546 -9.93924 -9.60952 -9.51671 -9.32429 -8.99917 -8.57371 -8.54449 -8.41214 -6.77207 -5.90642 -3.34024 1.19562 1.27351 2.99784 3.25745 3.27322 3.36968 3.38314 3.65929 4.19632 4.39378 4.63098 4.76835 4.87805 4.97044 5.02608 5.08774 5.22432 5.25849 5.30910 5.36145 5.38945 5.41709 5.46677 5.60402 5.69692 5.80789 5.90023 5.94979 6.03039 6.09519 6.14362 6.32767 6.34480 6.39309 6.43970 6.48982 6.52389 6.54914 6.69449 6.73041 6.77851 6.87601 6.95806 7.00979 7.12901 7.25639 7.50482 7.59679 7.75040 8.11665 8.37143 8.71153 9.12681 9.75349 10.30112 11.16426 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010909 B = 0.003931 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.991283 B = 7120.359556 C = 8419.297948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.142 3.858 3 N -0.583 5.583 4 C -0.258 4.258 5 H 0.067 0.933 6 C 0.008 3.992 7 N -0.891 5.891 8 Si 0.894 3.106 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.291 1.291 12 C 0.178 3.822 13 H 0.103 0.897 14 C -0.144 4.144 15 C 0.103 3.897 16 N -0.701 5.701 17 C 0.507 3.493 18 O -0.537 6.537 19 C 0.081 3.919 20 H 0.084 0.916 21 C -0.101 4.101 22 C -0.080 4.080 23 C -0.106 4.106 24 C -0.126 4.126 25 C -0.125 4.125 26 C -0.120 4.120 27 C -0.115 4.115 28 O -0.355 6.355 29 C 0.013 3.987 30 H 0.049 0.951 31 H 0.027 0.973 32 H 0.052 0.948 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.253 0.747 36 H 0.030 0.970 37 H 0.080 0.920 38 H 0.029 0.971 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.410 0.590 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.125 0.875 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.121 0.879 48 H 0.127 0.873 49 H 0.037 0.963 50 H 0.060 0.940 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.381 -7.843 3.353 15.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.016 3.984 3 N -0.305 5.305 4 C -0.387 4.387 5 H 0.084 0.916 6 C -0.192 4.192 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.216 1.216 11 H -0.218 1.218 12 C 0.070 3.930 13 H 0.121 0.879 14 C -0.203 4.203 15 C -0.023 4.023 16 N -0.353 5.353 17 C 0.291 3.709 18 O -0.414 6.414 19 C 0.020 3.980 20 H 0.102 0.898 21 C -0.139 4.139 22 C -0.080 4.080 23 C -0.124 4.124 24 C -0.144 4.144 25 C -0.143 4.143 26 C -0.138 4.138 27 C -0.133 4.133 28 O -0.273 6.273 29 C -0.083 4.083 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.099 0.901 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.246 0.754 42 H 0.114 0.886 43 H 0.105 0.895 44 H 0.143 0.857 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.139 0.861 48 H 0.145 0.855 49 H 0.056 0.944 50 H 0.078 0.922 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.314 -8.132 2.378 15.781 hybrid contribution 0.221 1.039 1.428 1.780 sum 13.535 -7.093 3.806 15.748 Atomic orbital electron populations 1.22395 0.99822 0.98364 1.02078 1.20793 0.91908 0.87587 0.98124 1.44033 1.73788 1.09731 1.02959 1.19182 1.43066 0.89191 0.87300 0.91551 1.25036 0.98952 0.97886 0.97291 1.70022 1.42783 1.08498 1.32158 0.86371 0.78551 0.80288 0.82430 1.20259 1.21622 1.21812 1.20515 0.90910 0.96597 0.84943 0.87945 1.22125 1.00577 0.99564 0.98038 1.22132 0.86976 1.00540 0.92613 1.45887 1.17196 1.53226 1.19007 1.20214 0.83671 0.79186 0.87796 1.90672 1.80498 1.49747 1.20527 1.21899 0.88877 0.96290 0.90963 0.89841 1.21132 0.96642 1.02554 0.93589 1.19827 0.96611 0.95370 0.96229 1.21093 0.94545 0.97873 0.98871 1.21136 0.98376 0.99320 0.95564 1.21144 0.99389 0.95244 0.98517 1.21157 0.95068 0.98369 0.99179 1.21206 0.98370 0.99015 0.94683 1.88011 1.13597 1.66949 1.58709 1.23226 0.84127 1.00022 1.00958 0.93155 0.95368 0.92931 0.94394 0.94582 0.93652 0.95145 0.90098 0.95171 0.92789 0.92729 0.75360 0.88570 0.89451 0.85736 0.86173 0.86335 0.86065 0.85498 0.94406 0.92152 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 10.02 37.16 0.37 -2.79 16 2 C 0.14 2.77 5.73 -4.04 -0.02 2.74 16 3 N -0.58 -12.53 1.84 -165.66 -0.30 -12.84 16 4 C -0.26 -6.12 9.50 -15.06 -0.14 -6.26 16 5 H 0.07 1.59 7.90 -52.49 -0.41 1.17 16 6 C 0.01 0.19 4.84 -17.43 -0.08 0.11 16 7 N -0.89 -22.96 10.24 55.49 0.57 -22.40 16 8 Si 0.89 19.68 29.59 -169.99 -5.03 14.65 16 9 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.18 3.69 1.93 -67.93 -0.13 3.56 16 13 H 0.10 2.43 5.93 -51.93 -0.31 2.12 16 14 C -0.14 -2.92 8.25 37.16 0.31 -2.61 16 15 C 0.10 1.94 4.86 -4.04 -0.02 1.92 16 16 N -0.70 -12.29 5.29 -60.29 -0.32 -12.61 16 17 C 0.51 9.00 7.18 -10.98 -0.08 8.92 16 18 O -0.54 -11.56 16.51 -14.30 -0.24 -11.80 16 19 C 0.08 1.17 2.73 -27.89 -0.08 1.09 16 20 H 0.08 1.08 7.79 -51.93 -0.40 0.68 16 21 C -0.10 -1.29 5.03 -27.88 -0.14 -1.43 16 22 C -0.08 -0.92 3.87 -104.62 -0.41 -1.33 16 23 C -0.11 -1.12 6.83 -39.58 -0.27 -1.39 16 24 C -0.13 -1.17 9.94 -39.58 -0.39 -1.56 16 25 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 26 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 27 C -0.11 -1.27 9.70 -39.58 -0.38 -1.66 16 28 O -0.36 -5.37 9.75 -55.09 -0.54 -5.90 16 29 C 0.01 0.15 10.24 101.05 1.03 1.18 16 30 H 0.05 0.98 6.03 -51.92 -0.31 0.67 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.04 0.71 6.35 -51.93 -0.33 0.38 16 34 H 0.04 0.69 8.09 -51.93 -0.42 0.27 16 35 H 0.25 6.46 8.31 -40.82 -0.34 6.12 16 36 H 0.03 0.58 6.50 -51.93 -0.34 0.24 16 37 H 0.08 1.87 7.22 -51.93 -0.37 1.50 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 1.05 6.76 -51.93 -0.35 0.70 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.41 7.08 7.78 -40.82 -0.32 6.76 16 42 H 0.10 1.23 7.71 -51.93 -0.40 0.83 16 43 H 0.09 1.16 8.08 -51.93 -0.42 0.74 16 44 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 45 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 46 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 47 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 48 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 49 H 0.04 0.41 8.09 -51.93 -0.42 -0.01 16 50 H 0.06 0.65 3.85 -51.93 -0.20 0.45 16 51 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 402.66 15.07 6.07 6.07 Total: -1.00 -28.28 402.66 -9.40 -37.68 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -8.37 Total: 9.76 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -1.23 Total: -2.61 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.06 Total: -47.84 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.77 Total: -17.70 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.65 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -28.28 -9.40 -37.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156994628.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.204 kcal (2) G-P(sol) polarization free energy of solvation -28.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds