Wall clock time and date at job start Tue Mar 31 2020 19:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47341 * 2 1 4 4 C 1.36937 * 120.00105 * 84.26952 * 3 2 1 5 5 H 1.07999 * 119.99596 * 28.84359 * 4 3 2 6 6 C 1.38809 * 120.00014 * 209.11796 * 4 3 2 7 7 N 1.31625 * 120.00056 * 18.62872 * 6 4 3 8 8 Si 1.86790 * 119.99961 * 198.63301 * 6 4 3 9 9 H 1.48500 * 109.47464 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47606 * 119.99855 * 8 6 4 11 11 H 1.48508 * 109.47104 * 240.00003 * 8 6 4 12 12 C 1.46502 * 119.99925 * 264.27268 * 3 2 1 13 13 H 1.08993 * 109.47136 * 183.52086 * 12 3 2 14 14 C 1.53002 * 109.46981 * 63.52079 * 12 3 2 15 15 C 1.52999 * 109.47234 * 303.52494 * 12 3 2 16 16 N 1.46498 * 109.46799 * 304.99610 * 15 12 3 17 17 C 1.34782 * 120.00013 * 180.02562 * 16 15 12 18 18 O 1.21283 * 119.99828 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.99847 * 180.02562 * 17 16 15 20 20 H 1.08997 * 109.47298 * 304.99733 * 19 17 16 21 21 C 1.52997 * 109.47365 * 64.99919 * 19 17 16 22 22 C 1.50705 * 109.47273 * 184.99705 * 21 19 17 23 23 C 1.38232 * 120.00056 * 269.73067 * 22 21 19 24 24 C 1.38239 * 120.00297 * 179.76572 * 23 22 21 25 25 C 1.38237 * 119.99080 * 0.50434 * 24 23 22 26 26 C 1.38231 * 120.00727 * 359.74772 * 25 24 23 27 27 C 1.38232 * 119.99743 * 89.99833 * 22 21 19 28 28 O 1.42902 * 109.47006 * 184.99685 * 19 17 16 29 29 C 1.42901 * 114.00088 * 149.99644 * 28 19 17 30 30 H 1.09008 * 109.46781 * 60.00456 * 1 2 3 31 31 H 1.08999 * 109.47070 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47250 * 300.00205 * 1 2 3 33 33 H 1.09001 * 109.47542 * 239.99731 * 2 1 3 34 34 H 1.08999 * 109.47191 * 119.99968 * 2 1 3 35 35 H 0.96994 * 119.99828 * 179.97438 * 7 6 4 36 36 H 1.09003 * 109.47217 * 300.00057 * 14 12 3 37 37 H 1.08999 * 109.46882 * 60.00182 * 14 12 3 38 38 H 1.08999 * 109.47288 * 179.97438 * 14 12 3 39 39 H 1.09003 * 109.47295 * 64.99783 * 15 12 3 40 40 H 1.08998 * 109.47332 * 185.00247 * 15 12 3 41 41 H 0.97007 * 120.00400 * 0.02562 * 16 15 12 42 42 H 1.08997 * 109.47565 * 304.99821 * 21 19 17 43 43 H 1.09002 * 109.47286 * 65.00149 * 21 19 17 44 44 H 1.08004 * 120.00312 * 359.97438 * 23 22 21 45 45 H 1.07996 * 120.00454 * 180.22996 * 24 23 22 46 46 H 1.08007 * 119.99322 * 179.72613 * 25 24 23 47 47 H 1.08003 * 120.00418 * 179.97438 * 26 25 24 48 48 H 1.07997 * 120.00394 * 0.02562 * 27 22 21 49 49 H 1.09002 * 109.47388 * 300.00612 * 29 28 19 50 50 H 1.09001 * 109.46926 * 60.00160 * 29 28 19 51 51 H 1.08995 * 109.47435 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1350 2.0663 1.1800 5 1 2.3291 1.5314 2.0979 6 6 1.9980 3.4475 1.1971 7 7 1.4073 4.0627 0.1946 8 14 2.6519 4.4330 2.6429 9 1 3.2683 3.5121 3.6314 10 1 3.6731 5.3983 2.1627 11 1 1.5347 5.1722 3.2838 12 6 2.3819 2.0296 -1.2624 13 1 2.7791 3.0240 -1.0589 14 6 1.1418 2.1478 -2.1507 15 6 3.4440 1.1927 -1.9783 16 7 4.5831 0.9792 -1.0821 17 6 5.6459 0.2643 -1.5016 18 8 5.6594 -0.2017 -2.6213 19 6 6.8173 0.0442 -0.5796 20 1 7.1873 1.0065 -0.2259 21 6 6.3738 -0.8020 0.6155 22 6 7.5108 -0.9194 1.5976 23 6 8.4095 -1.9645 1.4928 24 6 9.4553 -2.0695 2.3907 25 6 9.5963 -1.1351 3.3997 26 6 8.6946 -0.0929 3.5076 27 6 7.6519 0.0149 2.6065 28 8 7.8575 -0.6360 -1.2849 29 6 9.1733 -0.3236 -0.8234 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.3113 5.0278 0.2068 36 1 0.7445 1.1533 -2.3542 37 1 0.3851 2.7440 -1.6407 38 1 1.4121 2.6306 -3.0898 39 1 3.0184 0.2298 -2.2607 40 1 3.7789 1.7183 -2.8725 41 1 4.5724 1.3522 -0.1867 42 1 5.5218 -0.3265 1.1012 43 1 6.0874 -1.7957 0.2708 44 1 8.2965 -2.6973 0.7074 45 1 10.1595 -2.8840 2.3067 46 1 10.4108 -1.2197 4.1039 47 1 8.8046 0.6368 4.2962 48 1 6.9470 0.8288 2.6912 49 1 9.3538 0.7454 -0.9364 50 1 9.2645 -0.5983 0.2275 51 1 9.9054 -0.8792 -1.4093 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156994628.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:01 Heat of formation + Delta-G solvation = -50.131739 kcal Electronic energy + Delta-G solvation = -30358.194895 eV Core-core repulsion = 26450.826291 eV Total energy + Delta-G solvation = -3907.368604 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.31007 -40.16969 -38.81339 -38.12610 -35.39436 -34.20218 -33.67989 -32.46386 -31.80980 -30.57446 -30.07266 -27.35021 -27.07846 -25.82855 -24.87715 -23.44403 -23.26012 -22.05790 -21.26636 -20.98315 -18.91846 -18.28017 -17.93868 -17.60729 -16.94320 -16.58362 -16.39569 -16.23438 -15.92409 -15.82368 -15.51016 -15.43787 -15.06731 -14.43435 -14.27469 -14.14456 -14.08202 -13.75524 -13.65703 -13.64649 -13.46808 -13.22086 -13.07701 -12.98844 -12.80776 -12.76494 -12.61385 -12.21885 -12.09206 -12.03673 -11.98200 -11.77932 -11.69922 -11.26542 -11.23091 -11.08218 -10.64946 -10.42204 -9.95021 -9.76040 -9.40455 -8.57172 -7.78204 -5.22031 0.41734 0.51996 1.50275 1.56814 1.60115 1.62850 1.99133 2.58088 2.88090 3.05432 3.37185 3.57094 3.68499 3.88394 3.96165 4.05642 4.08289 4.21283 4.27312 4.34022 4.43512 4.48120 4.50046 4.54945 4.58861 4.66561 4.74957 4.78981 4.86386 4.86592 4.89521 4.90831 4.93352 5.05313 5.11788 5.16280 5.19289 5.20309 5.35812 5.50969 5.60642 5.62641 5.66203 5.72279 5.78100 5.78328 5.93471 6.06298 6.13512 6.51308 6.67890 7.25530 7.29213 7.96656 8.47021 9.26889 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010909 B = 0.003931 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.991283 B = 7120.359556 C = 8419.297948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.142 3.858 3 N -0.590 5.590 4 C -0.252 4.252 5 H 0.066 0.934 6 C -0.034 4.034 7 N -0.915 5.915 8 Si 0.947 3.053 9 H -0.265 1.265 10 H -0.294 1.294 11 H -0.305 1.305 12 C 0.185 3.815 13 H 0.075 0.925 14 C -0.134 4.134 15 C 0.114 3.886 16 N -0.696 5.696 17 C 0.507 3.493 18 O -0.577 6.577 19 C 0.090 3.910 20 H 0.098 0.902 21 C -0.091 4.091 22 C -0.092 4.092 23 C -0.114 4.114 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.126 4.126 27 C -0.128 4.128 28 O -0.379 6.379 29 C 0.010 3.990 30 H 0.040 0.960 31 H 0.057 0.943 32 H 0.030 0.970 33 H 0.047 0.953 34 H 0.041 0.959 35 H 0.246 0.754 36 H 0.040 0.960 37 H 0.050 0.950 38 H 0.042 0.958 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.412 0.588 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.123 0.877 45 H 0.143 0.857 46 H 0.144 0.856 47 H 0.137 0.863 48 H 0.125 0.875 49 H 0.042 0.958 50 H 0.069 0.931 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.200 -8.981 4.625 18.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.016 3.984 3 N -0.312 5.312 4 C -0.383 4.383 5 H 0.084 0.916 6 C -0.231 4.231 7 N -0.561 5.561 8 Si 0.777 3.223 9 H -0.190 1.190 10 H -0.221 1.221 11 H -0.233 1.233 12 C 0.078 3.922 13 H 0.093 0.907 14 C -0.193 4.193 15 C -0.012 4.012 16 N -0.347 5.347 17 C 0.293 3.707 18 O -0.457 6.457 19 C 0.029 3.971 20 H 0.116 0.884 21 C -0.129 4.129 22 C -0.092 4.092 23 C -0.132 4.132 24 C -0.143 4.143 25 C -0.141 4.141 26 C -0.144 4.144 27 C -0.146 4.146 28 O -0.297 6.297 29 C -0.086 4.086 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.249 0.751 42 H 0.111 0.889 43 H 0.096 0.904 44 H 0.141 0.859 45 H 0.161 0.839 46 H 0.161 0.839 47 H 0.155 0.845 48 H 0.143 0.857 49 H 0.061 0.939 50 H 0.087 0.913 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.144 -9.287 3.674 18.141 hybrid contribution -0.313 1.330 1.044 1.720 sum 14.831 -7.957 4.718 17.479 Atomic orbital electron populations 1.22275 0.99228 0.99761 1.00473 1.20866 0.92280 0.86429 0.98808 1.44127 1.74085 1.10309 1.02630 1.19347 1.41637 0.89310 0.87958 0.91592 1.25555 0.99723 0.98746 0.99105 1.70157 1.44266 1.07992 1.33636 0.85525 0.77316 0.78992 0.80449 1.18953 1.22101 1.23310 1.20335 0.91426 0.95479 0.84959 0.90710 1.21976 0.99529 0.99681 0.98131 1.21882 0.86898 0.99887 0.92498 1.45834 1.16987 1.53083 1.18817 1.20818 0.84201 0.78001 0.87658 1.90646 1.81365 1.51326 1.22383 1.21818 0.87620 0.97382 0.90313 0.88411 1.20988 0.97214 1.01538 0.93170 1.19713 0.96696 0.96383 0.96443 1.21166 0.94955 0.97661 0.99396 1.21417 0.98099 0.99868 0.94909 1.21480 0.99589 0.94470 0.98581 1.21410 0.94715 0.99028 0.99201 1.21296 0.99080 0.99086 0.95131 1.87974 1.14950 1.67325 1.59481 1.23401 0.82708 1.00668 1.01784 0.94076 0.92459 0.95111 0.93471 0.94037 0.94465 0.94060 0.93092 0.93850 0.92959 0.92784 0.75074 0.88928 0.90356 0.85866 0.83945 0.83870 0.84505 0.85691 0.93910 0.91269 0.88254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.81 10.02 71.98 0.72 -5.08 16 2 C 0.14 5.36 5.73 86.38 0.49 5.86 16 3 N -0.59 -25.17 1.84 -678.04 -1.25 -26.42 16 4 C -0.25 -11.90 9.50 84.03 0.80 -11.10 16 5 H 0.07 3.10 7.90 -2.91 -0.02 3.07 16 6 C -0.03 -1.69 4.84 84.86 0.41 -1.28 16 7 N -0.92 -48.01 10.24 21.65 0.22 -47.79 16 8 Si 0.95 40.61 29.59 68.60 2.03 42.64 16 9 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 10 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.31 -13.73 7.11 99.48 0.71 -13.02 16 12 C 0.19 7.73 1.93 44.99 0.09 7.81 16 13 H 0.07 3.60 5.93 -2.39 -0.01 3.59 16 14 C -0.13 -5.44 8.25 71.98 0.59 -4.84 16 15 C 0.11 4.28 4.86 86.38 0.42 4.70 16 16 N -0.70 -24.25 5.29 -463.06 -2.45 -26.70 16 17 C 0.51 17.92 7.18 87.66 0.63 18.55 16 18 O -0.58 -24.94 16.51 15.95 0.26 -24.68 16 19 C 0.09 2.53 2.73 29.85 0.08 2.61 16 20 H 0.10 2.44 7.79 -2.39 -0.02 2.42 16 21 C -0.09 -2.27 5.03 29.85 0.15 -2.12 16 22 C -0.09 -2.01 3.87 -19.87 -0.08 -2.09 16 23 C -0.11 -2.21 6.83 22.27 0.15 -2.06 16 24 C -0.13 -1.96 9.94 22.27 0.22 -1.74 16 25 C -0.12 -1.85 10.05 22.27 0.22 -1.63 16 26 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 27 C -0.13 -2.64 9.70 22.27 0.22 -2.42 16 28 O -0.38 -11.16 9.75 -129.99 -1.27 -12.43 16 29 C 0.01 0.21 10.24 113.37 1.16 1.37 16 30 H 0.04 1.57 6.03 -2.38 -0.01 1.55 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.05 1.70 6.35 -2.39 -0.02 1.69 16 34 H 0.04 1.53 8.09 -2.39 -0.02 1.51 16 35 H 0.25 12.85 8.31 -92.71 -0.77 12.08 16 36 H 0.04 1.55 6.50 -2.39 -0.02 1.53 16 37 H 0.05 2.39 7.22 -2.39 -0.02 2.37 16 38 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.05 2.00 6.76 -2.39 -0.02 1.98 16 40 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.41 14.12 7.78 -92.70 -0.72 13.40 16 42 H 0.09 2.32 7.71 -2.39 -0.02 2.30 16 43 H 0.08 2.06 8.08 -2.39 -0.02 2.04 16 44 H 0.12 2.38 8.06 -2.91 -0.02 2.35 16 45 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 46 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 47 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 48 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 49 H 0.04 0.86 8.09 -2.39 -0.02 0.84 16 50 H 0.07 1.35 3.85 -2.39 -0.01 1.34 16 51 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -60.41 402.66 4.25 -56.15 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: 0.19 Total: 34.63 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 6.51 Total: 4.59 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -3.47 Total: -100.91 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -1.00 Total: -37.11 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -60.41 4.25 -56.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156994628.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.022 kcal (2) G-P(sol) polarization free energy of solvation -60.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds