Wall clock time and date at job start Tue Mar 31 2020 19:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.47109 * 2 1 4 4 C 1.36940 * 119.99863 * 275.73615 * 3 2 1 5 5 H 1.07995 * 120.00384 * 33.27329 * 4 3 2 6 6 C 1.38815 * 119.99961 * 213.27435 * 4 3 2 7 7 N 1.31623 * 119.99941 * 17.26592 * 6 4 3 8 8 Si 1.86797 * 120.00231 * 197.26431 * 6 4 3 9 9 H 1.48503 * 109.46971 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47120 * 119.99758 * 8 6 4 11 11 H 1.48497 * 109.47188 * 240.00008 * 8 6 4 12 12 C 1.46502 * 120.00022 * 95.73450 * 3 2 1 13 13 H 1.08998 * 109.46895 * 180.02562 * 12 3 2 14 14 C 1.53000 * 109.47079 * 60.07366 * 12 3 2 15 15 C 1.52998 * 109.46994 * 300.07279 * 12 3 2 16 16 N 1.46499 * 109.47066 * 305.00124 * 15 12 3 17 17 C 1.34775 * 119.99699 * 180.02562 * 16 15 12 18 18 O 1.21280 * 120.00635 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.99911 * 179.97438 * 17 16 15 20 20 H 1.09004 * 109.47450 * 55.00290 * 19 17 16 21 21 C 1.53002 * 109.47209 * 294.99929 * 19 17 16 22 22 C 1.50706 * 109.47091 * 174.99808 * 21 19 17 23 23 C 1.38232 * 120.00263 * 269.72708 * 22 21 19 24 24 C 1.38233 * 120.00141 * 179.76733 * 23 22 21 25 25 C 1.38234 * 119.99968 * 0.50789 * 24 23 22 26 26 C 1.38243 * 120.00051 * 359.74521 * 25 24 23 27 27 C 1.38232 * 119.99738 * 359.97438 * 26 25 24 28 28 O 1.42901 * 109.47361 * 175.00149 * 19 17 16 29 29 C 1.42899 * 113.99914 * 270.00057 * 28 19 17 30 30 H 1.09002 * 109.47134 * 60.00139 * 1 2 3 31 31 H 1.08993 * 109.47166 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46917 * 300.00651 * 1 2 3 33 33 H 1.09003 * 109.47129 * 240.00083 * 2 1 3 34 34 H 1.09002 * 109.47134 * 119.99861 * 2 1 3 35 35 H 0.96997 * 120.00375 * 180.02562 * 7 6 4 36 36 H 1.09005 * 109.46842 * 59.99780 * 14 12 3 37 37 H 1.08995 * 109.47170 * 179.97438 * 14 12 3 38 38 H 1.09002 * 109.47001 * 300.00174 * 14 12 3 39 39 H 1.09003 * 109.47032 * 184.99825 * 15 12 3 40 40 H 1.08996 * 109.47021 * 65.00147 * 15 12 3 41 41 H 0.97000 * 120.00759 * 359.97438 * 16 15 12 42 42 H 1.08995 * 109.47225 * 55.00205 * 21 19 17 43 43 H 1.08995 * 109.46896 * 294.99736 * 21 19 17 44 44 H 1.08002 * 119.99750 * 0.02562 * 23 22 21 45 45 H 1.07994 * 120.00256 * 180.23089 * 24 23 22 46 46 H 1.07997 * 120.00613 * 179.72568 * 25 24 23 47 47 H 1.07995 * 120.00426 * 179.97438 * 26 25 24 48 48 H 1.08003 * 120.00189 * 179.97438 * 27 26 25 49 49 H 1.09005 * 109.47345 * 299.99830 * 29 28 19 50 50 H 1.09005 * 109.47135 * 59.99604 * 29 28 19 51 51 H 1.09003 * 109.47472 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1348 2.0663 -1.1800 5 1 1.4369 1.8812 -1.9831 6 6 3.1501 2.9987 -1.3440 7 7 4.1872 2.9917 -0.5335 8 14 3.0446 4.2631 -2.7149 9 1 1.7882 4.0599 -3.4801 10 1 3.0524 5.6284 -2.1307 11 1 4.2088 4.1066 -3.6233 12 6 2.3820 2.0296 1.2624 13 1 2.7200 3.0468 1.0642 14 6 3.5076 1.2411 1.9350 15 6 1.1630 2.0671 2.1862 16 7 0.0468 2.7178 1.4956 17 6 -1.1384 2.8646 2.1201 18 8 -1.2809 2.4585 3.2540 19 6 -2.2865 3.5345 1.4100 20 1 -2.4742 3.0271 0.4637 21 6 -1.9356 4.9995 1.1425 22 6 -3.0298 5.6370 0.3254 23 6 -2.9636 5.6153 -1.0551 24 6 -3.9697 6.1958 -1.8046 25 6 -5.0368 6.8072 -1.1734 26 6 -5.1004 6.8335 0.2073 27 6 -4.0972 6.2480 0.9567 28 8 -3.4569 3.4666 2.2271 29 6 -4.2538 2.3014 2.0052 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 4.8964 3.6434 -0.6478 36 1 4.3760 1.2144 1.2767 37 1 3.7785 1.7237 2.8739 38 1 3.1703 0.2237 2.1330 39 1 1.4081 2.6272 3.0886 40 1 0.8799 1.0496 2.4557 41 1 0.1609 3.0437 0.5891 42 1 -0.9948 5.0537 0.5948 43 1 -1.8352 5.5280 2.0904 44 1 -2.1279 5.1411 -1.5483 45 1 -3.9199 6.1755 -2.8832 46 1 -5.8206 7.2646 -1.7588 47 1 -5.9338 7.3116 0.7005 48 1 -4.1467 6.2689 2.0354 49 1 -4.5848 2.2799 0.9668 50 1 -3.6619 1.4107 2.2164 51 1 -5.1224 2.3245 2.6633 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156994629.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:05 Heat of formation + Delta-G solvation = -42.752751 kcal Electronic energy + Delta-G solvation = -30520.611388 eV Core-core repulsion = 26613.562761 eV Total energy + Delta-G solvation = -3907.048627 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.99231 -39.00876 -37.51208 -36.58165 -33.90078 -33.22262 -31.91556 -31.12879 -30.89487 -29.37115 -28.19015 -26.40405 -25.72291 -24.00147 -23.79333 -22.56923 -21.72967 -21.11575 -19.85332 -19.28980 -17.41428 -16.84485 -16.79719 -16.69477 -15.62001 -15.21125 -14.95976 -14.86830 -14.80562 -14.62109 -14.19644 -13.90501 -13.53992 -13.41998 -13.20960 -12.86935 -12.74024 -12.65456 -12.37587 -12.25051 -12.10916 -11.85343 -11.70855 -11.52739 -11.18768 -11.11722 -11.06577 -10.98096 -10.89748 -10.85701 -10.70294 -10.34682 -10.32212 -10.11010 -9.67743 -9.46705 -9.08443 -8.92189 -8.65000 -8.55909 -8.40463 -6.71082 -5.92451 -3.41341 1.30381 1.39606 2.98879 3.26579 3.36275 3.37529 3.47645 3.79254 3.94025 4.37581 4.69555 4.84678 4.96171 5.04929 5.08830 5.12262 5.22338 5.26133 5.36483 5.36771 5.41387 5.49350 5.52799 5.66900 5.72177 5.84546 5.89170 6.00985 6.04801 6.05302 6.15673 6.22537 6.34557 6.44226 6.45902 6.48381 6.51420 6.59916 6.62668 6.64919 6.80255 6.86983 6.97768 7.01648 7.10568 7.11566 7.45436 7.54981 7.73201 8.12572 8.38889 8.71097 9.11909 9.73278 10.30723 11.14054 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010357 B = 0.004296 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.936741 B = 6515.442388 C = 8220.404380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 N -0.583 5.583 4 C -0.263 4.263 5 H 0.064 0.936 6 C 0.013 3.987 7 N -0.889 5.889 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.290 1.290 12 C 0.177 3.823 13 H 0.100 0.900 14 C -0.145 4.145 15 C 0.102 3.898 16 N -0.698 5.698 17 C 0.483 3.517 18 O -0.544 6.544 19 C 0.082 3.918 20 H 0.085 0.915 21 C -0.076 4.076 22 C -0.076 4.076 23 C -0.116 4.116 24 C -0.122 4.122 25 C -0.126 4.126 26 C -0.125 4.125 27 C -0.099 4.099 28 O -0.355 6.355 29 C 0.033 3.967 30 H 0.046 0.954 31 H 0.032 0.968 32 H 0.050 0.950 33 H 0.040 0.960 34 H 0.036 0.964 35 H 0.254 0.746 36 H 0.078 0.922 37 H 0.033 0.967 38 H 0.029 0.971 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.410 0.590 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.125 0.875 45 H 0.120 0.880 46 H 0.117 0.883 47 H 0.118 0.882 48 H 0.123 0.877 49 H 0.039 0.961 50 H 0.044 0.956 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.510 3.846 0.832 15.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.393 4.393 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.532 5.532 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.217 1.217 12 C 0.069 3.931 13 H 0.118 0.882 14 C -0.204 4.204 15 C -0.024 4.024 16 N -0.351 5.351 17 C 0.267 3.733 18 O -0.422 6.422 19 C 0.020 3.980 20 H 0.102 0.898 21 C -0.114 4.114 22 C -0.076 4.076 23 C -0.134 4.134 24 C -0.140 4.140 25 C -0.144 4.144 26 C -0.143 4.143 27 C -0.117 4.117 28 O -0.272 6.272 29 C -0.064 4.064 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.247 0.753 42 H 0.114 0.886 43 H 0.106 0.894 44 H 0.143 0.857 45 H 0.138 0.862 46 H 0.135 0.865 47 H 0.136 0.864 48 H 0.141 0.859 49 H 0.058 0.942 50 H 0.063 0.937 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.492 3.788 1.767 15.083 hybrid contribution 0.142 0.487 -1.365 1.457 sum -14.350 4.275 0.402 14.979 Atomic orbital electron populations 1.22454 1.00188 0.98983 1.01388 1.20745 0.91590 0.87501 0.98731 1.43901 1.75979 1.08254 1.02300 1.19111 1.08615 1.18189 0.93369 0.91835 1.25151 0.94522 1.01342 0.97744 1.70012 1.07851 1.35837 1.39468 0.86381 0.77687 0.81674 0.81955 1.20158 1.21465 1.21692 1.20493 0.88882 0.99524 0.84152 0.88211 1.22026 1.01146 0.97958 0.99268 1.22166 0.88139 0.96231 0.95818 1.46030 1.10943 1.59036 1.19066 1.21166 0.84522 0.80315 0.87294 1.90660 1.83067 1.50183 1.18270 1.21997 0.85717 0.96503 0.93738 0.89761 1.20694 0.97286 0.92548 1.00842 1.19723 0.96075 0.98269 0.93558 1.21185 0.99161 0.99658 0.93386 1.21118 0.94474 0.98575 0.99806 1.21124 0.98428 1.00117 0.94763 1.21125 0.98886 1.00199 0.94059 1.21082 0.93520 0.96954 1.00102 1.87937 1.34329 1.42285 1.62675 1.22789 0.94985 0.88312 1.00305 0.93488 0.94872 0.93074 0.94117 0.94527 0.93571 0.90290 0.94834 0.95178 0.92951 0.92925 0.75333 0.88575 0.89443 0.85659 0.86193 0.86481 0.86358 0.85855 0.94232 0.93741 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 9.87 37.16 0.37 -2.61 16 2 C 0.14 2.76 5.67 -4.04 -0.02 2.74 16 3 N -0.58 -12.65 1.85 -165.66 -0.31 -12.96 16 4 C -0.26 -6.29 9.26 -15.06 -0.14 -6.43 16 5 H 0.06 1.53 7.89 -52.49 -0.41 1.12 16 6 C 0.01 0.31 4.85 -17.43 -0.08 0.23 16 7 N -0.89 -23.01 10.60 55.49 0.59 -22.42 16 8 Si 0.89 19.66 29.59 -169.99 -5.03 14.63 16 9 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 10 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.18 3.68 1.92 -67.93 -0.13 3.55 16 13 H 0.10 2.36 6.03 -51.93 -0.31 2.05 16 14 C -0.14 -2.91 9.05 37.16 0.34 -2.57 16 15 C 0.10 1.92 4.34 -4.04 -0.02 1.90 16 16 N -0.70 -12.20 3.89 -60.30 -0.23 -12.43 16 17 C 0.48 8.39 6.90 -10.99 -0.08 8.32 16 18 O -0.54 -11.33 16.51 -14.30 -0.24 -11.57 16 19 C 0.08 1.18 2.50 -27.88 -0.07 1.11 16 20 H 0.08 1.12 7.79 -51.93 -0.40 0.72 16 21 C -0.08 -0.99 5.03 -27.88 -0.14 -1.13 16 22 C -0.08 -0.94 4.97 -104.62 -0.52 -1.46 16 23 C -0.12 -1.38 9.70 -39.59 -0.38 -1.76 16 24 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 25 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 26 C -0.12 -1.30 10.05 -39.58 -0.40 -1.69 16 27 C -0.10 -1.15 9.40 -39.58 -0.37 -1.52 16 28 O -0.36 -5.27 9.38 -55.09 -0.52 -5.78 16 29 C 0.03 0.40 10.81 101.05 1.09 1.50 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.92 4.99 -51.93 -0.26 0.66 16 33 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 34 H 0.04 0.70 6.45 -51.93 -0.33 0.37 16 35 H 0.25 6.49 8.31 -40.82 -0.34 6.15 16 36 H 0.08 1.81 7.40 -51.93 -0.38 1.42 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.03 0.56 6.67 -51.93 -0.35 0.22 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 1.03 7.05 -51.93 -0.37 0.66 16 41 H 0.41 7.19 7.60 -40.82 -0.31 6.88 16 42 H 0.10 1.21 7.71 -51.93 -0.40 0.81 16 43 H 0.09 1.15 8.09 -51.93 -0.42 0.73 16 44 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 45 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 46 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 47 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 48 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 49 H 0.04 0.43 8.09 -51.93 -0.42 0.01 16 50 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 408.83 15.07 6.16 6.16 Total: -1.00 -28.11 408.83 -9.51 -37.62 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -8.58 Total: 9.96 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -1.35 Total: -3.21 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.05 Total: -47.81 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.75 Total: -17.35 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -28.11 -9.51 -37.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156994629.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.132 kcal (2) G-P(sol) polarization free energy of solvation -28.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds