Wall clock time and date at job start Tue Mar 31 2020 19:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.47109 * 2 1 4 4 C 1.36940 * 119.99863 * 275.73615 * 3 2 1 5 5 H 1.07995 * 120.00384 * 33.27329 * 4 3 2 6 6 C 1.38815 * 119.99961 * 213.27435 * 4 3 2 7 7 N 1.31623 * 119.99941 * 17.26592 * 6 4 3 8 8 Si 1.86797 * 120.00231 * 197.26431 * 6 4 3 9 9 H 1.48503 * 109.46971 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47120 * 119.99758 * 8 6 4 11 11 H 1.48497 * 109.47188 * 240.00008 * 8 6 4 12 12 C 1.46502 * 120.00022 * 95.73450 * 3 2 1 13 13 H 1.08998 * 109.46895 * 180.02562 * 12 3 2 14 14 C 1.53000 * 109.47079 * 60.07366 * 12 3 2 15 15 C 1.52998 * 109.46994 * 300.07279 * 12 3 2 16 16 N 1.46499 * 109.47066 * 305.00124 * 15 12 3 17 17 C 1.34775 * 119.99699 * 180.02562 * 16 15 12 18 18 O 1.21280 * 120.00635 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.99911 * 179.97438 * 17 16 15 20 20 H 1.09004 * 109.47450 * 55.00290 * 19 17 16 21 21 C 1.53002 * 109.47209 * 294.99929 * 19 17 16 22 22 C 1.50706 * 109.47091 * 174.99808 * 21 19 17 23 23 C 1.38232 * 120.00263 * 269.72708 * 22 21 19 24 24 C 1.38233 * 120.00141 * 179.76733 * 23 22 21 25 25 C 1.38234 * 119.99968 * 0.50789 * 24 23 22 26 26 C 1.38243 * 120.00051 * 359.74521 * 25 24 23 27 27 C 1.38232 * 119.99738 * 359.97438 * 26 25 24 28 28 O 1.42901 * 109.47361 * 175.00149 * 19 17 16 29 29 C 1.42899 * 113.99914 * 270.00057 * 28 19 17 30 30 H 1.09002 * 109.47134 * 60.00139 * 1 2 3 31 31 H 1.08993 * 109.47166 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46917 * 300.00651 * 1 2 3 33 33 H 1.09003 * 109.47129 * 240.00083 * 2 1 3 34 34 H 1.09002 * 109.47134 * 119.99861 * 2 1 3 35 35 H 0.96997 * 120.00375 * 180.02562 * 7 6 4 36 36 H 1.09005 * 109.46842 * 59.99780 * 14 12 3 37 37 H 1.08995 * 109.47170 * 179.97438 * 14 12 3 38 38 H 1.09002 * 109.47001 * 300.00174 * 14 12 3 39 39 H 1.09003 * 109.47032 * 184.99825 * 15 12 3 40 40 H 1.08996 * 109.47021 * 65.00147 * 15 12 3 41 41 H 0.97000 * 120.00759 * 359.97438 * 16 15 12 42 42 H 1.08995 * 109.47225 * 55.00205 * 21 19 17 43 43 H 1.08995 * 109.46896 * 294.99736 * 21 19 17 44 44 H 1.08002 * 119.99750 * 0.02562 * 23 22 21 45 45 H 1.07994 * 120.00256 * 180.23089 * 24 23 22 46 46 H 1.07997 * 120.00613 * 179.72568 * 25 24 23 47 47 H 1.07995 * 120.00426 * 179.97438 * 26 25 24 48 48 H 1.08003 * 120.00189 * 179.97438 * 27 26 25 49 49 H 1.09005 * 109.47345 * 299.99830 * 29 28 19 50 50 H 1.09005 * 109.47135 * 59.99604 * 29 28 19 51 51 H 1.09003 * 109.47472 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1348 2.0663 -1.1800 5 1 1.4369 1.8812 -1.9831 6 6 3.1501 2.9987 -1.3440 7 7 4.1872 2.9917 -0.5335 8 14 3.0446 4.2631 -2.7149 9 1 1.7882 4.0599 -3.4801 10 1 3.0524 5.6284 -2.1307 11 1 4.2088 4.1066 -3.6233 12 6 2.3820 2.0296 1.2624 13 1 2.7200 3.0468 1.0642 14 6 3.5076 1.2411 1.9350 15 6 1.1630 2.0671 2.1862 16 7 0.0468 2.7178 1.4956 17 6 -1.1384 2.8646 2.1201 18 8 -1.2809 2.4585 3.2540 19 6 -2.2865 3.5345 1.4100 20 1 -2.4742 3.0271 0.4637 21 6 -1.9356 4.9995 1.1425 22 6 -3.0298 5.6370 0.3254 23 6 -2.9636 5.6153 -1.0551 24 6 -3.9697 6.1958 -1.8046 25 6 -5.0368 6.8072 -1.1734 26 6 -5.1004 6.8335 0.2073 27 6 -4.0972 6.2480 0.9567 28 8 -3.4569 3.4666 2.2271 29 6 -4.2538 2.3014 2.0052 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 4.8964 3.6434 -0.6478 36 1 4.3760 1.2144 1.2767 37 1 3.7785 1.7237 2.8739 38 1 3.1703 0.2237 2.1330 39 1 1.4081 2.6272 3.0886 40 1 0.8799 1.0496 2.4557 41 1 0.1609 3.0437 0.5891 42 1 -0.9948 5.0537 0.5948 43 1 -1.8352 5.5280 2.0904 44 1 -2.1279 5.1411 -1.5483 45 1 -3.9199 6.1755 -2.8832 46 1 -5.8206 7.2646 -1.7588 47 1 -5.9338 7.3116 0.7005 48 1 -4.1467 6.2689 2.0354 49 1 -4.5848 2.2799 0.9668 50 1 -3.6619 1.4107 2.2164 51 1 -5.1224 2.3245 2.6633 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156994629.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:04 Heat of formation + Delta-G solvation = -55.281443 kcal Electronic energy + Delta-G solvation = -30521.154673 eV Core-core repulsion = 26613.562761 eV Total energy + Delta-G solvation = -3907.591912 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.24452 -40.00850 -38.89993 -38.02076 -35.33919 -34.36679 -33.67362 -32.67976 -31.70902 -30.44996 -29.86650 -27.51125 -27.00097 -25.77610 -25.03273 -23.38953 -23.31950 -22.03169 -21.21753 -20.97601 -18.92153 -18.29847 -18.00062 -17.64359 -16.85434 -16.71464 -16.34633 -16.11558 -15.84131 -15.81293 -15.60335 -15.32842 -15.06147 -14.39046 -14.31839 -14.20623 -13.99577 -13.89366 -13.70985 -13.60086 -13.49652 -13.21172 -13.14670 -12.81460 -12.70301 -12.68630 -12.54949 -12.40055 -12.13871 -12.00635 -11.97001 -11.84920 -11.77884 -11.53546 -11.35213 -11.15771 -10.42893 -10.33330 -9.91591 -9.75369 -9.55871 -8.51291 -7.79902 -5.30074 0.46117 0.56826 1.49992 1.56434 1.61325 1.62572 2.19750 2.56387 2.79342 2.93750 3.35045 3.61567 3.67926 3.89494 4.00750 4.03283 4.12335 4.23348 4.27119 4.36262 4.44249 4.46099 4.47069 4.52881 4.57574 4.68689 4.68994 4.78343 4.81117 4.84007 4.87452 4.88910 4.94298 4.98198 5.06912 5.18556 5.22890 5.23579 5.32687 5.51420 5.59087 5.63320 5.68106 5.71526 5.76000 5.78094 5.88170 6.00926 6.17976 6.52154 6.69779 7.25434 7.30003 7.94395 8.47369 9.24242 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010357 B = 0.004296 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.936741 B = 6515.442388 C = 8220.404380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.139 3.861 3 N -0.591 5.591 4 C -0.258 4.258 5 H 0.063 0.937 6 C -0.030 4.030 7 N -0.915 5.915 8 Si 0.947 3.053 9 H -0.264 1.264 10 H -0.293 1.293 11 H -0.303 1.303 12 C 0.184 3.816 13 H 0.072 0.928 14 C -0.136 4.136 15 C 0.115 3.885 16 N -0.694 5.694 17 C 0.485 3.515 18 O -0.579 6.579 19 C 0.092 3.908 20 H 0.098 0.902 21 C -0.070 4.070 22 C -0.088 4.088 23 C -0.130 4.130 24 C -0.128 4.128 25 C -0.126 4.126 26 C -0.127 4.127 27 C -0.111 4.111 28 O -0.369 6.369 29 C 0.028 3.972 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.044 0.956 33 H 0.031 0.969 34 H 0.041 0.959 35 H 0.247 0.753 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.041 0.959 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.411 0.589 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.126 0.874 45 H 0.137 0.863 46 H 0.143 0.857 47 H 0.140 0.860 48 H 0.122 0.878 49 H 0.056 0.944 50 H 0.030 0.970 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.768 4.183 -0.026 17.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.013 3.987 3 N -0.313 5.313 4 C -0.389 4.389 5 H 0.081 0.919 6 C -0.227 4.227 7 N -0.559 5.559 8 Si 0.777 3.223 9 H -0.188 1.188 10 H -0.220 1.220 11 H -0.231 1.231 12 C 0.077 3.923 13 H 0.090 0.910 14 C -0.196 4.196 15 C -0.011 4.011 16 N -0.345 5.345 17 C 0.271 3.729 18 O -0.460 6.460 19 C 0.030 3.970 20 H 0.115 0.885 21 C -0.108 4.108 22 C -0.088 4.088 23 C -0.148 4.148 24 C -0.146 4.146 25 C -0.144 4.144 26 C -0.145 4.145 27 C -0.129 4.129 28 O -0.286 6.286 29 C -0.068 4.068 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.248 0.752 42 H 0.114 0.886 43 H 0.099 0.901 44 H 0.144 0.856 45 H 0.155 0.845 46 H 0.160 0.840 47 H 0.158 0.842 48 H 0.140 0.860 49 H 0.074 0.926 50 H 0.049 0.951 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -16.777 4.114 0.896 17.297 hybrid contribution 0.804 0.336 -1.092 1.397 sum -15.973 4.449 -0.196 16.583 Atomic orbital electron populations 1.22261 0.98115 1.00262 1.00871 1.20824 0.93046 0.86278 0.98517 1.44024 1.76114 1.09125 1.02046 1.19272 1.07904 1.17826 0.93856 0.91894 1.25686 0.94499 1.02970 0.99564 1.70143 1.08415 1.36338 1.40992 0.85527 0.77431 0.79583 0.79767 1.18808 1.21950 1.23061 1.20322 0.89730 0.97996 0.84270 0.91014 1.21897 0.99729 0.98762 0.99172 1.21889 0.87761 0.96187 0.95250 1.45975 1.10840 1.58777 1.18944 1.21729 0.84881 0.79467 0.86831 1.90639 1.83662 1.51755 1.19908 1.21956 0.84444 0.97074 0.93516 0.88480 1.20621 0.97795 0.91639 1.00752 1.19668 0.96190 0.99190 0.93760 1.21305 0.99815 1.00329 0.93331 1.21394 0.94262 0.98142 1.00781 1.21465 0.98691 0.99372 0.94896 1.21414 0.99011 0.99634 0.94413 1.21190 0.93921 0.97456 1.00295 1.87928 1.34355 1.43242 1.63068 1.22951 0.95006 0.86923 1.01900 0.93758 0.92713 0.93696 0.95027 0.94034 0.94318 0.93246 0.93329 0.94015 0.93054 0.93200 0.75223 0.88596 0.90115 0.85618 0.84491 0.83968 0.84227 0.85998 0.92553 0.95125 0.87760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.15 9.87 71.98 0.71 -4.44 16 2 C 0.14 5.32 5.67 86.38 0.49 5.81 16 3 N -0.59 -25.50 1.85 -678.02 -1.25 -26.75 16 4 C -0.26 -12.25 9.26 84.03 0.78 -11.48 16 5 H 0.06 2.97 7.89 -2.91 -0.02 2.95 16 6 C -0.03 -1.46 4.85 84.86 0.41 -1.05 16 7 N -0.91 -48.15 10.60 21.65 0.23 -47.92 16 8 Si 0.95 40.51 29.59 68.60 2.03 42.54 16 9 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 10 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 12 C 0.18 7.68 1.92 44.99 0.09 7.77 16 13 H 0.07 3.45 6.03 -2.39 -0.01 3.44 16 14 C -0.14 -5.49 9.05 71.98 0.65 -4.84 16 15 C 0.12 4.31 4.34 86.38 0.37 4.68 16 16 N -0.69 -23.99 3.89 -463.07 -1.80 -25.79 16 17 C 0.48 16.66 6.90 87.66 0.60 17.26 16 18 O -0.58 -24.05 16.51 15.96 0.26 -23.79 16 19 C 0.09 2.56 2.50 29.85 0.07 2.63 16 20 H 0.10 2.45 7.79 -2.38 -0.02 2.43 16 21 C -0.07 -1.79 5.03 29.85 0.15 -1.64 16 22 C -0.09 -2.08 4.97 -19.86 -0.10 -2.17 16 23 C -0.13 -2.89 9.70 22.27 0.22 -2.68 16 24 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 25 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 26 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 27 C -0.11 -2.43 9.40 22.27 0.21 -2.22 16 28 O -0.37 -10.55 9.38 -129.99 -1.22 -11.77 16 29 C 0.03 0.65 10.81 113.37 1.23 1.88 16 30 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.04 1.54 4.99 -2.39 -0.01 1.53 16 33 H 0.03 1.26 8.09 -2.39 -0.02 1.24 16 34 H 0.04 1.54 6.45 -2.39 -0.02 1.52 16 35 H 0.25 12.92 8.31 -92.71 -0.77 12.15 16 36 H 0.05 2.28 7.40 -2.38 -0.02 2.27 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.04 1.54 6.67 -2.39 -0.02 1.53 16 39 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.05 1.91 7.05 -2.39 -0.02 1.89 16 41 H 0.41 14.25 7.60 -92.71 -0.70 13.55 16 42 H 0.10 2.39 7.71 -2.39 -0.02 2.37 16 43 H 0.08 2.12 8.09 -2.39 -0.02 2.10 16 44 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 45 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 46 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 47 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 48 H 0.12 2.64 8.06 -2.91 -0.02 2.61 16 49 H 0.06 1.10 8.09 -2.38 -0.02 1.08 16 50 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 51 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -59.58 408.83 5.01 -54.57 By element: Atomic # 1 Polarization: 35.48 SS G_CDS: 0.20 Total: 35.68 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 6.56 Total: 3.22 kcal Atomic # 7 Polarization: -97.63 SS G_CDS: -2.82 Total: -100.46 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -0.96 Total: -35.56 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -59.58 5.01 -54.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156994629.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.708 kcal (2) G-P(sol) polarization free energy of solvation -59.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds