Wall clock time and date at job start Tue Mar 31 2020 19:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47011 * 2 1 4 4 C 1.36927 * 120.00593 * 84.27189 * 3 2 1 5 5 H 1.08004 * 120.00015 * 28.83755 * 4 3 2 6 6 C 1.38815 * 120.00246 * 209.11744 * 4 3 2 7 7 N 1.31618 * 119.99692 * 18.62334 * 6 4 3 8 8 Si 1.86799 * 119.99969 * 198.61930 * 6 4 3 9 9 H 1.48499 * 109.47143 * 60.00366 * 8 6 4 10 10 H 1.48506 * 109.46892 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47490 * 299.99963 * 8 6 4 12 12 C 1.46499 * 119.99406 * 264.27278 * 3 2 1 13 13 H 1.09008 * 109.46886 * 183.53149 * 12 3 2 14 14 C 1.53001 * 109.47602 * 63.52686 * 12 3 2 15 15 C 1.53005 * 109.47089 * 303.52600 * 12 3 2 16 16 N 1.46498 * 109.47276 * 305.00255 * 15 12 3 17 17 C 1.34779 * 120.00279 * 180.02562 * 16 15 12 18 18 O 1.21283 * 119.99668 * 359.97438 * 17 16 15 19 19 C 1.50692 * 120.00430 * 180.02562 * 17 16 15 20 20 H 1.09006 * 109.47082 * 300.00085 * 19 17 16 21 21 C 1.53002 * 109.47061 * 59.99310 * 19 17 16 22 22 C 1.50696 * 109.47309 * 179.97438 * 19 17 16 23 23 C 1.38284 * 119.97100 * 299.72523 * 22 19 17 24 24 C 1.38247 * 120.10747 * 179.72766 * 23 22 19 25 25 C 1.38165 * 120.06074 * 0.54446 * 24 23 22 26 26 C 1.38714 * 119.93635 * 359.73111 * 25 24 23 27 27 O 1.35903 * 120.04954 * 179.97438 * 26 25 24 28 28 C 1.42900 * 117.00616 * 0.02562 * 27 26 25 29 29 C 1.38123 * 119.97332 * 120.00147 * 22 19 17 30 30 H 1.09001 * 109.46999 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47089 * 300.00500 * 1 2 3 32 32 H 1.09001 * 109.46739 * 60.00349 * 1 2 3 33 33 H 1.08987 * 109.47414 * 239.99573 * 2 1 3 34 34 H 1.08999 * 109.47041 * 119.99206 * 2 1 3 35 35 H 0.97001 * 119.99808 * 180.02562 * 7 6 4 36 36 H 1.08998 * 109.46897 * 300.00353 * 14 12 3 37 37 H 1.09006 * 109.46887 * 59.99833 * 14 12 3 38 38 H 1.08996 * 109.47302 * 179.97438 * 14 12 3 39 39 H 1.08995 * 109.46777 * 65.00625 * 15 12 3 40 40 H 1.09002 * 109.46812 * 185.00284 * 15 12 3 41 41 H 0.97002 * 119.99636 * 0.02562 * 16 15 12 42 42 H 1.09005 * 109.46982 * 60.00736 * 21 19 17 43 43 H 1.09006 * 109.47438 * 179.97438 * 21 19 17 44 44 H 1.08996 * 109.47392 * 300.00351 * 21 19 17 45 45 H 1.07997 * 119.95061 * 359.97438 * 23 22 19 46 46 H 1.08003 * 119.96868 * 180.25690 * 24 23 22 47 47 H 1.07998 * 120.03088 * 179.70831 * 25 24 23 48 48 H 1.08995 * 109.47578 * 180.02562 * 28 27 26 49 49 H 1.09009 * 109.46437 * 300.00179 * 28 27 26 50 50 H 1.09002 * 109.46580 * 59.99499 * 28 27 26 51 51 H 1.08005 * 120.02778 * 0.02562 * 29 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1350 2.0663 1.1798 5 1 2.3292 1.5315 2.0979 6 6 1.9980 3.4476 1.1970 7 7 1.4073 4.0627 0.1944 8 14 2.6516 4.4331 2.6429 9 1 4.1153 4.2164 2.7684 10 1 2.3818 5.8765 2.4205 11 1 1.9769 3.9903 3.8894 12 6 2.3818 2.0295 -1.2625 13 1 2.7792 3.0240 -1.0590 14 6 1.1417 2.1478 -2.1508 15 6 3.4440 1.1926 -1.9783 16 7 4.5830 0.9789 -1.0821 17 6 5.6458 0.2640 -1.5017 18 8 5.6589 -0.2028 -2.6210 19 6 6.8172 0.0438 -0.5797 20 1 7.2428 1.0065 -0.2965 21 6 6.3469 -0.6948 0.6750 22 6 7.8634 -0.7805 -1.2848 23 6 7.5543 -2.0511 -1.7345 24 6 8.5102 -2.8075 -2.3867 25 6 9.7805 -2.2999 -2.5808 26 6 10.0946 -1.0278 -2.1255 27 8 11.3435 -0.5264 -2.3146 28 6 12.2834 -1.3639 -2.9908 29 6 9.1318 -0.2684 -1.4762 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8898 34 1 1.8934 -0.5137 0.8901 35 1 1.3119 5.0279 0.2062 36 1 0.7444 1.1534 -2.3541 37 1 0.3850 2.7440 -1.6408 38 1 1.4121 2.6305 -3.0898 39 1 3.0182 0.2298 -2.2607 40 1 3.7788 1.7182 -2.8725 41 1 4.5723 1.3520 -0.1868 42 1 5.9214 -1.6576 0.3918 43 1 7.1944 -0.8546 1.3417 44 1 5.5901 -0.0990 1.1851 45 1 6.5634 -2.4517 -1.5796 46 1 8.2651 -3.7980 -2.7407 47 1 10.5282 -2.8930 -3.0861 48 1 13.2380 -0.8446 -3.0751 49 1 12.4204 -2.2860 -2.4258 50 1 11.9087 -1.6002 -3.9867 51 1 9.3742 0.7221 -1.1204 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157132136.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:07 Heat of formation + Delta-G solvation = -51.109081 kcal Electronic energy + Delta-G solvation = -29710.841586 eV Core-core repulsion = 25803.430601 eV Total energy + Delta-G solvation = -3907.410985 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.44872 -40.54925 -38.83855 -38.17256 -35.30993 -34.82959 -33.68414 -32.38171 -31.65280 -30.08892 -29.98611 -28.12534 -27.18349 -25.82431 -25.16664 -23.52515 -23.26695 -22.49344 -21.07820 -20.65209 -18.97884 -18.54424 -17.89225 -17.11463 -16.98892 -16.82727 -16.60845 -16.45275 -16.35857 -15.81364 -15.41782 -15.13956 -14.83383 -14.46746 -14.37730 -14.27644 -14.07736 -13.72486 -13.57821 -13.29213 -13.22444 -13.14465 -13.03020 -12.96275 -12.90193 -12.81631 -12.54422 -12.34401 -12.28344 -12.14834 -12.10801 -11.88072 -11.70103 -11.64686 -11.25945 -11.22468 -10.69431 -10.39822 -9.86671 -9.78325 -9.10380 -8.56337 -7.77751 -5.21476 0.34249 0.53217 1.53954 1.57284 1.61280 1.74692 2.29119 2.47798 2.59314 2.89221 3.37440 3.58770 3.66966 3.85127 3.97190 4.15443 4.16170 4.24830 4.30499 4.36125 4.41151 4.42298 4.49513 4.55947 4.58181 4.68912 4.74333 4.77472 4.87451 4.89440 4.90590 4.93305 4.93644 5.05579 5.08134 5.12817 5.19448 5.25914 5.33144 5.36401 5.50628 5.58805 5.63019 5.68429 5.78388 5.79664 5.81930 5.94703 6.48329 6.51613 6.76578 7.27443 7.37829 7.97718 8.47706 9.27023 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015696 B = 0.002868 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.514712 B = 9759.021486 C =10528.198312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.142 3.858 3 N -0.588 5.588 4 C -0.254 4.254 5 H 0.066 0.934 6 C -0.036 4.036 7 N -0.917 5.917 8 Si 0.950 3.050 9 H -0.274 1.274 10 H -0.305 1.305 11 H -0.285 1.285 12 C 0.184 3.816 13 H 0.073 0.927 14 C -0.133 4.133 15 C 0.116 3.884 16 N -0.701 5.701 17 C 0.512 3.488 18 O -0.581 6.581 19 C -0.068 4.068 20 H 0.116 0.884 21 C -0.133 4.133 22 C -0.032 4.032 23 C -0.136 4.136 24 C -0.087 4.087 25 C -0.209 4.209 26 C 0.112 3.888 27 O -0.337 6.337 28 C 0.019 3.981 29 C -0.162 4.162 30 H 0.057 0.943 31 H 0.029 0.971 32 H 0.040 0.960 33 H 0.047 0.953 34 H 0.042 0.958 35 H 0.246 0.754 36 H 0.040 0.960 37 H 0.049 0.951 38 H 0.041 0.959 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.411 0.589 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.114 0.886 46 H 0.146 0.854 47 H 0.151 0.849 48 H 0.118 0.882 49 H 0.067 0.933 50 H 0.061 0.939 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.578 -12.323 -3.303 20.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.017 3.983 3 N -0.310 5.310 4 C -0.385 4.385 5 H 0.084 0.916 6 C -0.233 4.233 7 N -0.562 5.562 8 Si 0.780 3.220 9 H -0.200 1.200 10 H -0.232 1.232 11 H -0.212 1.212 12 C 0.077 3.923 13 H 0.091 0.909 14 C -0.192 4.192 15 C -0.010 4.010 16 N -0.351 5.351 17 C 0.299 3.701 18 O -0.462 6.462 19 C -0.089 4.089 20 H 0.134 0.866 21 C -0.191 4.191 22 C -0.032 4.032 23 C -0.154 4.154 24 C -0.105 4.105 25 C -0.228 4.228 26 C 0.067 3.933 27 O -0.252 6.252 28 C -0.076 4.076 29 C -0.181 4.181 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.248 0.752 42 H 0.078 0.922 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.132 0.868 46 H 0.164 0.836 47 H 0.169 0.831 48 H 0.136 0.864 49 H 0.085 0.915 50 H 0.080 0.920 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 16.621 -12.299 -4.041 21.068 hybrid contribution -0.323 1.034 0.833 1.367 sum 16.297 -11.265 -3.208 20.070 Atomic orbital electron populations 1.22282 0.99277 0.99767 1.00427 1.20862 0.92233 0.86402 0.98824 1.44082 1.74080 1.10310 1.02548 1.19290 1.41782 0.89358 0.88030 0.91618 1.25581 0.99718 0.98788 0.99224 1.70149 1.44213 1.08044 1.33773 0.85618 0.78958 0.77233 0.80177 1.19980 1.23152 1.21157 1.20339 0.91496 0.95503 0.84990 0.90931 1.21971 0.99575 0.99626 0.98079 1.21805 0.87138 0.99640 0.92439 1.45907 1.17203 1.53355 1.18657 1.20845 0.83998 0.77561 0.87698 1.90651 1.81591 1.51665 1.22274 1.20306 0.91873 1.01265 0.95450 0.86564 1.21754 1.02512 1.00256 0.94544 1.19171 0.92658 0.94283 0.97110 1.20929 0.99492 0.94522 1.00453 1.21181 0.92283 1.00378 0.96615 1.21463 0.99138 0.95702 1.06470 1.19059 0.85031 0.92956 0.96275 1.86035 1.19286 1.45100 1.74734 1.23333 0.91783 0.95911 0.96524 1.20396 0.92109 1.01141 1.04415 0.92390 0.95177 0.94125 0.93438 0.93998 0.94466 0.94055 0.93183 0.93964 0.93084 0.93173 0.75247 0.92205 0.89685 0.91157 0.86795 0.83638 0.83109 0.86397 0.91457 0.92002 0.84923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.83 10.02 71.98 0.72 -5.11 16 2 C 0.14 5.40 5.73 86.38 0.49 5.90 16 3 N -0.59 -25.41 1.84 -678.02 -1.25 -26.66 16 4 C -0.25 -12.20 9.50 84.04 0.80 -11.40 16 5 H 0.07 3.12 7.90 -2.91 -0.02 3.10 16 6 C -0.04 -1.82 4.84 84.86 0.41 -1.41 16 7 N -0.92 -48.88 10.24 21.65 0.22 -48.65 16 8 Si 0.95 41.37 29.59 68.60 2.03 43.40 16 9 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 10 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 11 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 12 C 0.18 7.78 1.93 44.99 0.09 7.87 16 13 H 0.07 3.56 5.93 -2.38 -0.01 3.55 16 14 C -0.13 -5.48 8.25 71.98 0.59 -4.88 16 15 C 0.12 4.37 4.86 86.38 0.42 4.79 16 16 N -0.70 -24.45 5.28 -463.06 -2.45 -26.90 16 17 C 0.51 17.29 7.03 87.65 0.62 17.91 16 18 O -0.58 -23.32 15.13 -3.04 -0.05 -23.37 16 19 C -0.07 -1.80 2.90 -12.29 -0.04 -1.83 16 20 H 0.12 2.75 7.88 -2.38 -0.02 2.73 16 21 C -0.13 -3.02 8.90 71.98 0.64 -2.38 16 22 C -0.03 -0.86 4.39 -19.88 -0.09 -0.95 16 23 C -0.14 -3.62 7.93 22.28 0.18 -3.44 16 24 C -0.09 -1.93 10.04 22.25 0.22 -1.71 16 25 C -0.21 -4.38 9.04 22.37 0.20 -4.18 16 26 C 0.11 2.72 6.69 22.50 0.15 2.87 16 27 O -0.34 -7.41 10.50 -92.46 -0.97 -8.38 16 28 C 0.02 0.23 9.81 113.37 1.11 1.34 16 29 C -0.16 -4.25 9.61 22.36 0.21 -4.04 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.04 1.55 6.03 -2.39 -0.01 1.54 16 33 H 0.05 1.71 6.35 -2.39 -0.02 1.70 16 34 H 0.04 1.54 8.09 -2.39 -0.02 1.52 16 35 H 0.25 13.12 8.31 -92.71 -0.77 12.34 16 36 H 0.04 1.56 6.50 -2.39 -0.02 1.55 16 37 H 0.05 2.37 7.22 -2.38 -0.02 2.35 16 38 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.05 1.95 6.76 -2.39 -0.02 1.93 16 40 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.41 14.40 7.50 -92.71 -0.70 13.70 16 42 H 0.06 1.38 7.37 -2.38 -0.02 1.36 16 43 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 44 H 0.07 1.65 7.56 -2.39 -0.02 1.63 16 45 H 0.11 3.13 7.51 -2.91 -0.02 3.11 16 46 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 47 H 0.15 2.20 6.30 -2.91 -0.02 2.19 16 48 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.07 0.65 7.66 -2.38 -0.02 0.63 16 50 H 0.06 0.67 7.66 -2.39 -0.02 0.65 16 51 H 0.13 3.20 7.94 -2.91 -0.02 3.18 16 Total: -1.00 -61.08 402.74 4.51 -56.57 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: 0.23 Total: 34.63 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 6.74 Total: -0.66 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -3.47 Total: -102.21 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -1.02 Total: -31.74 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -61.08 4.51 -56.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157132136.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.465 kcal (2) G-P(sol) polarization free energy of solvation -61.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds