Wall clock time and date at job start Tue Mar 31 2020 19:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42896 * 109.47100 * 2 1 4 4 C 1.35898 * 117.00180 * 180.02562 * 3 2 1 5 5 C 1.38758 * 120.05672 * 0.02562 * 4 3 2 6 6 C 1.38123 * 119.94432 * 179.97438 * 5 4 3 7 7 C 1.38282 * 120.05461 * 359.74812 * 6 5 4 8 8 C 1.38239 * 120.11519 * 0.50741 * 7 6 5 9 9 C 1.50703 * 119.97493 * 179.76853 * 8 7 6 10 10 C 1.50697 * 109.47263 * 269.72463 * 9 8 7 11 11 O 1.21286 * 119.99694 * 359.97438 * 10 9 8 12 12 N 1.34768 * 120.00179 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00288 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47622 * 180.02562 * 13 12 10 15 15 H 1.09005 * 109.47174 * 64.99775 * 14 13 12 16 16 C 1.52999 * 109.47255 * 184.99813 * 14 13 12 17 17 N 1.46501 * 109.47103 * 305.00210 * 14 13 12 18 18 C 1.36931 * 120.00048 * 117.14171 * 17 14 13 19 19 H 1.08005 * 119.99695 * 214.07194 * 18 17 14 20 20 C 1.38809 * 120.00298 * 34.08112 * 18 17 14 21 21 N 1.31622 * 119.99784 * 17.03612 * 20 18 17 22 22 Si 1.86799 * 120.00271 * 197.04574 * 20 18 17 23 23 H 1.48497 * 109.47516 * 89.99415 * 22 20 18 24 24 H 1.48503 * 109.47239 * 209.99610 * 22 20 18 25 25 H 1.48504 * 109.46768 * 329.99341 * 22 20 18 26 26 C 1.46506 * 119.99522 * 297.14458 * 17 14 13 27 27 C 1.52995 * 109.47078 * 95.91721 * 26 17 14 28 28 C 1.38173 * 120.05468 * 359.49176 * 8 7 6 29 29 H 1.08998 * 109.47297 * 59.99798 * 1 2 3 30 30 H 1.08997 * 109.46994 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46886 * 299.99594 * 1 2 3 32 32 H 1.08997 * 109.47096 * 240.00022 * 2 1 3 33 33 H 1.09003 * 109.47436 * 119.99719 * 2 1 3 34 34 H 1.07999 * 120.02205 * 359.95847 * 5 4 3 35 35 H 1.07996 * 119.96705 * 180.02562 * 6 5 4 36 36 H 1.08007 * 119.94305 * 180.27888 * 7 6 5 37 37 H 1.08999 * 109.47284 * 149.71916 * 9 8 7 38 38 H 1.09001 * 109.47181 * 29.72696 * 9 8 7 39 39 H 0.97001 * 120.00128 * 359.97438 * 12 10 9 40 40 H 1.08999 * 109.47355 * 59.99659 * 13 12 10 41 41 H 1.09008 * 109.47060 * 300.00038 * 13 12 10 42 42 H 1.08999 * 109.47351 * 299.99880 * 16 14 13 43 43 H 1.09002 * 109.46894 * 60.00376 * 16 14 13 44 44 H 1.09004 * 109.46869 * 179.97438 * 16 14 13 45 45 H 0.96999 * 119.99872 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.46625 * 215.91528 * 26 17 14 47 47 H 1.08994 * 109.47383 * 335.91103 * 26 17 14 48 48 H 1.09003 * 109.47288 * 179.97438 * 27 26 17 49 49 H 1.09002 * 109.46892 * 299.99785 * 27 26 17 50 50 H 1.08994 * 109.47518 * 59.99465 * 27 26 17 51 51 H 1.07995 * 120.02723 * 180.23300 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.2000 0.4258 -0.0016 6 6 5.5689 0.6095 -0.0027 7 6 6.0961 1.8879 -0.0080 8 6 5.2551 2.9850 -0.0016 9 6 5.8331 4.3768 -0.0021 10 6 6.0269 4.8408 1.4185 11 8 5.7249 4.1131 2.3406 12 7 6.5358 6.0643 1.6643 13 6 6.7237 6.5156 3.0453 14 6 7.3106 7.9285 3.0448 15 1 6.5897 8.6213 2.6106 16 6 7.6228 8.3516 4.4816 17 7 8.5425 7.9453 2.2521 18 6 8.6182 8.7129 1.1207 19 1 9.1978 8.3728 0.2752 20 6 7.9502 9.9282 1.0605 21 7 7.5307 10.5041 2.1672 22 14 7.6464 10.7463 -0.5912 23 1 6.3452 10.2865 -1.1395 24 1 7.6162 12.2205 -0.4153 25 1 8.7363 10.3821 -1.5318 26 6 9.6934 7.1408 2.6699 27 6 9.6840 5.8083 1.9180 28 6 3.8850 2.8066 -0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.7886 -0.5728 -0.0013 35 1 6.2280 -0.2460 -0.0039 36 1 7.1669 2.0294 -0.0134 37 1 5.1502 5.0536 -0.5155 38 1 6.7940 4.3710 -0.5168 39 1 6.7777 6.6461 0.9268 40 1 7.4060 5.8385 3.5592 41 1 5.7625 6.5220 3.5594 42 1 6.7063 8.3391 5.0714 43 1 8.3438 7.6588 4.9158 44 1 8.0414 9.3580 4.4812 45 1 7.0635 11.3532 2.1251 46 1 10.6139 7.6789 2.4441 47 1 9.6357 6.9534 3.7420 48 1 10.5406 5.2099 2.2285 49 1 8.7634 5.2702 2.1437 50 1 9.7417 5.9957 0.8458 51 1 3.2284 3.6641 0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157158529.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:19 Heat of formation + Delta-G solvation = -40.626880 kcal Electronic energy + Delta-G solvation = -29288.577057 eV Core-core repulsion = 25381.620615 eV Total energy + Delta-G solvation = -3906.956442 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.30670 -39.22418 -37.65001 -36.77446 -33.56880 -32.63985 -32.19306 -31.89158 -31.01313 -29.65106 -28.26190 -27.78465 -25.13187 -23.94542 -23.76707 -22.56456 -21.72231 -21.10679 -19.74492 -19.21515 -17.93599 -17.00904 -16.45017 -16.25587 -16.14541 -16.04166 -15.49895 -14.94161 -14.67197 -14.36017 -13.94975 -13.71143 -13.53794 -13.47771 -13.18653 -13.00355 -12.87980 -12.67601 -12.39849 -12.26160 -11.99548 -11.88364 -11.80526 -11.71294 -11.55441 -11.36817 -11.07364 -10.96871 -10.91325 -10.85649 -10.82230 -10.65243 -10.29116 -10.06675 -9.64199 -9.43851 -9.42123 -8.77676 -8.52618 -8.32399 -8.18853 -6.66368 -5.89112 -3.39244 1.30400 1.47756 3.03679 3.15209 3.29849 3.38844 3.39596 3.62545 4.05665 4.40723 4.61542 4.63143 4.71266 4.86087 4.91407 5.02940 5.12612 5.25426 5.31177 5.34827 5.37958 5.47061 5.47663 5.48465 5.63948 5.69538 5.77871 5.93182 6.03471 6.06555 6.21494 6.27078 6.27650 6.39062 6.41120 6.49940 6.53982 6.61768 6.63492 6.68123 6.74689 6.83406 6.91619 7.12930 7.16373 7.36249 7.47868 7.56449 7.75271 8.22585 8.43212 8.81950 9.15112 9.76519 10.34471 11.16948 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015130 B = 0.002614 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.184202 B =10707.420966 C =11156.070558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.318 6.318 4 C 0.128 3.872 5 C -0.214 4.214 6 C -0.081 4.081 7 C -0.142 4.142 8 C -0.015 4.015 9 C -0.108 4.108 10 C 0.508 3.492 11 O -0.552 6.552 12 N -0.701 5.701 13 C 0.103 3.897 14 C 0.174 3.826 15 H 0.102 0.898 16 C -0.144 4.144 17 N -0.581 5.581 18 C -0.262 4.262 19 H 0.064 0.936 20 C 0.011 3.989 21 N -0.890 5.890 22 Si 0.897 3.103 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.140 3.860 27 C -0.169 4.169 28 C -0.138 4.138 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.411 0.589 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.034 0.966 43 H 0.031 0.969 44 H 0.074 0.926 45 H 0.255 0.745 46 H 0.040 0.960 47 H 0.037 0.963 48 H 0.032 0.968 49 H 0.051 0.949 50 H 0.046 0.954 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.595 -17.784 -4.815 19.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.232 6.232 4 C 0.083 3.917 5 C -0.232 4.232 6 C -0.099 4.099 7 C -0.160 4.160 8 C -0.016 4.016 9 C -0.148 4.148 10 C 0.293 3.707 11 O -0.431 6.431 12 N -0.352 5.352 13 C -0.022 4.022 14 C 0.066 3.934 15 H 0.120 0.880 16 C -0.203 4.203 17 N -0.303 5.303 18 C -0.392 4.392 19 H 0.081 0.919 20 C -0.189 4.189 21 N -0.532 5.532 22 Si 0.727 3.273 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.204 1.204 26 C 0.013 3.987 27 C -0.228 4.228 28 C -0.156 4.156 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.248 0.752 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.093 0.907 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.055 0.945 48 H 0.051 0.949 49 H 0.070 0.930 50 H 0.065 0.935 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.028 -17.951 -4.118 20.091 hybrid contribution 0.080 0.534 -1.103 1.228 sum -7.948 -17.417 -5.221 19.844 Atomic orbital electron populations 1.21776 0.92853 1.02712 1.03596 1.22743 0.95774 0.82240 1.01255 1.86064 1.19262 1.29012 1.88853 1.18871 0.82030 0.94041 0.96751 1.21146 0.94461 0.97670 1.09955 1.20840 0.94228 0.97083 0.97721 1.20906 0.99705 0.91984 1.03403 1.19096 0.92241 0.94188 0.96054 1.20724 1.03562 0.94238 0.96229 1.20304 0.77884 0.82038 0.90485 1.90680 1.51445 1.54831 1.46145 1.45956 1.62745 1.16105 1.10409 1.22145 0.99299 0.99007 0.81783 1.20532 0.90042 0.91114 0.91699 0.88041 1.22000 0.99137 1.02402 0.96800 1.43864 1.07804 1.50779 1.27833 1.19086 1.30758 0.97849 0.91516 0.91865 1.25187 1.01654 0.95617 0.96461 1.70005 1.41120 1.16883 1.25241 0.86391 0.78286 0.78639 0.84013 1.21328 1.21816 1.20401 1.20766 0.91241 0.90939 0.95726 1.22422 0.99838 0.99410 1.01169 1.20225 0.94563 0.94870 1.05961 0.91533 0.90486 0.91461 0.92194 0.92130 0.85901 0.85943 0.85983 0.87953 0.87745 0.75222 0.92994 0.93185 0.94723 0.95013 0.90659 0.93535 0.94174 0.94482 0.94916 0.93044 0.93466 0.85435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.06 0.47 5.46 37.16 0.20 0.68 16 3 O -0.32 -3.99 10.14 -19.42 -0.20 -4.19 16 4 C 0.13 1.72 6.69 -39.21 -0.26 1.46 16 5 C -0.21 -2.52 9.04 -39.43 -0.36 -2.87 16 6 C -0.08 -0.94 10.04 -39.61 -0.40 -1.34 16 7 C -0.14 -1.85 9.69 -39.56 -0.38 -2.24 16 8 C -0.02 -0.21 4.37 -104.64 -0.46 -0.67 16 9 C -0.11 -1.45 5.83 -29.03 -0.17 -1.62 16 10 C 0.51 8.81 7.78 -10.99 -0.09 8.72 16 11 O -0.55 -11.47 16.03 5.55 0.09 -11.38 16 12 N -0.70 -12.55 4.28 -60.30 -0.26 -12.81 16 13 C 0.10 1.99 4.36 -4.04 -0.02 1.98 16 14 C 0.17 3.68 1.95 -67.93 -0.13 3.55 16 15 H 0.10 2.46 5.94 -51.93 -0.31 2.15 16 16 C -0.14 -2.93 9.05 37.16 0.34 -2.59 16 17 N -0.58 -12.83 1.88 -165.66 -0.31 -13.14 16 18 C -0.26 -6.37 9.07 -15.06 -0.14 -6.51 16 19 H 0.06 1.55 7.89 -52.48 -0.41 1.13 16 20 C 0.01 0.28 4.86 -17.43 -0.08 0.19 16 21 N -0.89 -23.45 10.90 55.49 0.61 -22.84 16 22 Si 0.90 20.01 29.59 -169.99 -5.03 14.98 16 23 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 C 0.14 2.79 5.75 -4.04 -0.02 2.76 16 27 C -0.17 -2.99 9.95 37.16 0.37 -2.62 16 28 C -0.14 -1.97 9.64 -39.43 -0.38 -2.35 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 32 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 33 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 34 H 0.12 1.13 6.30 -52.49 -0.33 0.80 16 35 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 36 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 37 H 0.10 1.21 8.08 -51.93 -0.42 0.79 16 38 H 0.10 1.22 8.08 -51.93 -0.42 0.80 16 39 H 0.41 7.45 7.74 -40.82 -0.32 7.13 16 40 H 0.05 1.03 6.98 -51.93 -0.36 0.67 16 41 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.03 0.60 6.56 -51.93 -0.34 0.26 16 44 H 0.07 1.72 7.69 -51.93 -0.40 1.33 16 45 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 46 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 47 H 0.04 0.72 6.29 -51.93 -0.33 0.39 16 48 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.05 0.94 5.32 -51.93 -0.28 0.66 16 50 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 51 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 407.71 15.07 6.14 6.14 Total: -1.00 -29.13 407.71 -9.05 -38.18 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -8.49 Total: 9.17 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -1.60 Total: -4.10 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.04 Total: -48.79 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.11 Total: -15.57 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.03 Total: 14.98 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -29.13 -9.05 -38.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157158529.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.450 kcal (2) G-P(sol) polarization free energy of solvation -29.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds