Wall clock time and date at job start Tue Mar 31 2020 19:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42896 * 109.47100 * 2 1 4 4 C 1.35898 * 117.00180 * 180.02562 * 3 2 1 5 5 C 1.38758 * 120.05672 * 0.02562 * 4 3 2 6 6 C 1.38123 * 119.94432 * 179.97438 * 5 4 3 7 7 C 1.38282 * 120.05461 * 359.74812 * 6 5 4 8 8 C 1.38239 * 120.11519 * 0.50741 * 7 6 5 9 9 C 1.50703 * 119.97493 * 179.76853 * 8 7 6 10 10 C 1.50697 * 109.47263 * 269.72463 * 9 8 7 11 11 O 1.21286 * 119.99694 * 359.97438 * 10 9 8 12 12 N 1.34768 * 120.00179 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00288 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47622 * 180.02562 * 13 12 10 15 15 H 1.09005 * 109.47174 * 64.99775 * 14 13 12 16 16 C 1.52999 * 109.47255 * 184.99813 * 14 13 12 17 17 N 1.46501 * 109.47103 * 305.00210 * 14 13 12 18 18 C 1.36931 * 120.00048 * 117.14171 * 17 14 13 19 19 H 1.08005 * 119.99695 * 214.07194 * 18 17 14 20 20 C 1.38809 * 120.00298 * 34.08112 * 18 17 14 21 21 N 1.31622 * 119.99784 * 17.03612 * 20 18 17 22 22 Si 1.86799 * 120.00271 * 197.04574 * 20 18 17 23 23 H 1.48497 * 109.47516 * 89.99415 * 22 20 18 24 24 H 1.48503 * 109.47239 * 209.99610 * 22 20 18 25 25 H 1.48504 * 109.46768 * 329.99341 * 22 20 18 26 26 C 1.46506 * 119.99522 * 297.14458 * 17 14 13 27 27 C 1.52995 * 109.47078 * 95.91721 * 26 17 14 28 28 C 1.38173 * 120.05468 * 359.49176 * 8 7 6 29 29 H 1.08998 * 109.47297 * 59.99798 * 1 2 3 30 30 H 1.08997 * 109.46994 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46886 * 299.99594 * 1 2 3 32 32 H 1.08997 * 109.47096 * 240.00022 * 2 1 3 33 33 H 1.09003 * 109.47436 * 119.99719 * 2 1 3 34 34 H 1.07999 * 120.02205 * 359.95847 * 5 4 3 35 35 H 1.07996 * 119.96705 * 180.02562 * 6 5 4 36 36 H 1.08007 * 119.94305 * 180.27888 * 7 6 5 37 37 H 1.08999 * 109.47284 * 149.71916 * 9 8 7 38 38 H 1.09001 * 109.47181 * 29.72696 * 9 8 7 39 39 H 0.97001 * 120.00128 * 359.97438 * 12 10 9 40 40 H 1.08999 * 109.47355 * 59.99659 * 13 12 10 41 41 H 1.09008 * 109.47060 * 300.00038 * 13 12 10 42 42 H 1.08999 * 109.47351 * 299.99880 * 16 14 13 43 43 H 1.09002 * 109.46894 * 60.00376 * 16 14 13 44 44 H 1.09004 * 109.46869 * 179.97438 * 16 14 13 45 45 H 0.96999 * 119.99872 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.46625 * 215.91528 * 26 17 14 47 47 H 1.08994 * 109.47383 * 335.91103 * 26 17 14 48 48 H 1.09003 * 109.47288 * 179.97438 * 27 26 17 49 49 H 1.09002 * 109.46892 * 299.99785 * 27 26 17 50 50 H 1.08994 * 109.47518 * 59.99465 * 27 26 17 51 51 H 1.07995 * 120.02723 * 180.23300 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.2000 0.4258 -0.0016 6 6 5.5689 0.6095 -0.0027 7 6 6.0961 1.8879 -0.0080 8 6 5.2551 2.9850 -0.0016 9 6 5.8331 4.3768 -0.0021 10 6 6.0269 4.8408 1.4185 11 8 5.7249 4.1131 2.3406 12 7 6.5358 6.0643 1.6643 13 6 6.7237 6.5156 3.0453 14 6 7.3106 7.9285 3.0448 15 1 6.5897 8.6213 2.6106 16 6 7.6228 8.3516 4.4816 17 7 8.5425 7.9453 2.2521 18 6 8.6182 8.7129 1.1207 19 1 9.1978 8.3728 0.2752 20 6 7.9502 9.9282 1.0605 21 7 7.5307 10.5041 2.1672 22 14 7.6464 10.7463 -0.5912 23 1 6.3452 10.2865 -1.1395 24 1 7.6162 12.2205 -0.4153 25 1 8.7363 10.3821 -1.5318 26 6 9.6934 7.1408 2.6699 27 6 9.6840 5.8083 1.9180 28 6 3.8850 2.8066 -0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.7886 -0.5728 -0.0013 35 1 6.2280 -0.2460 -0.0039 36 1 7.1669 2.0294 -0.0134 37 1 5.1502 5.0536 -0.5155 38 1 6.7940 4.3710 -0.5168 39 1 6.7777 6.6461 0.9268 40 1 7.4060 5.8385 3.5592 41 1 5.7625 6.5220 3.5594 42 1 6.7063 8.3391 5.0714 43 1 8.3438 7.6588 4.9158 44 1 8.0414 9.3580 4.4812 45 1 7.0635 11.3532 2.1251 46 1 10.6139 7.6789 2.4441 47 1 9.6357 6.9534 3.7420 48 1 10.5406 5.2099 2.2285 49 1 8.7634 5.2702 2.1437 50 1 9.7417 5.9957 0.8458 51 1 3.2284 3.6641 0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157158529.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:18 Heat of formation + Delta-G solvation = -55.206946 kcal Electronic energy + Delta-G solvation = -29289.209296 eV Core-core repulsion = 25381.620615 eV Total energy + Delta-G solvation = -3907.588681 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.29462 -40.52951 -38.81603 -38.23405 -35.15016 -33.77854 -33.60867 -32.88878 -32.57956 -30.54204 -29.93641 -28.97044 -26.55702 -25.75298 -24.54047 -23.50565 -23.30726 -22.11623 -21.10281 -20.86289 -18.94955 -18.65701 -17.83721 -17.13314 -17.02550 -17.01939 -16.97231 -16.45377 -16.32957 -15.75585 -15.31427 -15.05344 -14.63028 -14.44451 -14.28710 -14.21639 -14.09423 -13.93103 -13.80165 -13.48016 -13.40001 -13.21993 -12.82267 -12.80848 -12.76109 -12.72265 -12.60379 -12.52432 -12.40797 -12.32838 -12.01854 -11.82643 -11.70272 -11.63338 -11.33284 -11.14609 -10.84029 -10.40666 -9.84212 -9.77771 -9.13051 -8.49097 -7.79084 -5.30649 0.33659 0.51614 1.52135 1.56474 1.62018 1.77974 2.24036 2.44092 2.57200 2.91284 3.34989 3.68238 3.68847 3.87088 4.04880 4.07499 4.13589 4.15694 4.26176 4.32214 4.36082 4.41437 4.49840 4.51050 4.60800 4.64101 4.71390 4.72743 4.82561 4.89241 4.92195 4.92794 4.94362 5.01079 5.08756 5.09507 5.19326 5.24875 5.35088 5.36397 5.47899 5.56154 5.64450 5.65029 5.73761 5.79753 5.84039 5.87177 6.49207 6.53444 6.79494 7.26690 7.41158 7.95446 8.48658 9.24379 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015130 B = 0.002614 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.184202 B =10707.420966 C =11156.070558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.338 6.338 4 C 0.115 3.885 5 C -0.213 4.213 6 C -0.081 4.081 7 C -0.156 4.156 8 C -0.030 4.030 9 C -0.100 4.100 10 C 0.510 3.490 11 O -0.587 6.587 12 N -0.700 5.700 13 C 0.117 3.883 14 C 0.180 3.820 15 H 0.072 0.928 16 C -0.135 4.135 17 N -0.589 5.589 18 C -0.257 4.257 19 H 0.063 0.937 20 C -0.034 4.034 21 N -0.917 5.917 22 Si 0.953 3.047 23 H -0.283 1.283 24 H -0.305 1.305 25 H -0.272 1.272 26 C 0.137 3.863 27 C -0.153 4.153 28 C -0.162 4.162 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.133 0.867 37 H 0.118 0.882 38 H 0.126 0.874 39 H 0.411 0.589 40 H 0.049 0.951 41 H 0.046 0.954 42 H 0.049 0.951 43 H 0.044 0.956 44 H 0.045 0.955 45 H 0.247 0.753 46 H 0.030 0.970 47 H 0.042 0.958 48 H 0.054 0.946 49 H 0.045 0.955 50 H 0.043 0.957 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.344 -20.173 -5.872 22.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.253 6.253 4 C 0.070 3.930 5 C -0.232 4.232 6 C -0.099 4.099 7 C -0.174 4.174 8 C -0.031 4.031 9 C -0.139 4.139 10 C 0.297 3.703 11 O -0.468 6.468 12 N -0.350 5.350 13 C -0.009 4.009 14 C 0.072 3.928 15 H 0.090 0.910 16 C -0.195 4.195 17 N -0.311 5.311 18 C -0.387 4.387 19 H 0.081 0.919 20 C -0.231 4.231 21 N -0.561 5.561 22 Si 0.782 3.218 23 H -0.210 1.210 24 H -0.233 1.233 25 H -0.197 1.197 26 C 0.012 3.988 27 C -0.213 4.213 28 C -0.181 4.181 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.167 0.833 35 H 0.170 0.830 36 H 0.151 0.849 37 H 0.136 0.864 38 H 0.144 0.856 39 H 0.248 0.752 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.049 0.951 47 H 0.061 0.939 48 H 0.073 0.927 49 H 0.064 0.936 50 H 0.063 0.937 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.770 -20.365 -5.193 22.406 hybrid contribution -0.002 1.195 -0.736 1.404 sum -7.772 -19.169 -5.929 21.518 Atomic orbital electron populations 1.21814 0.91603 1.04229 1.03026 1.23067 0.96842 0.80754 1.02297 1.86049 1.18934 1.31486 1.88794 1.19062 0.82767 0.94299 0.96858 1.21476 0.94467 0.98424 1.08806 1.21230 0.94699 0.97582 0.96350 1.21169 1.00269 0.92386 1.03553 1.19200 0.92333 0.94636 0.96918 1.20726 1.05121 0.94478 0.93612 1.20896 0.76501 0.81126 0.91767 1.90659 1.52819 1.55649 1.47694 1.45929 1.62933 1.16489 1.09687 1.21842 0.98767 0.97522 0.82758 1.20368 0.89245 0.91474 0.91678 0.91008 1.21873 1.00009 1.00831 0.96758 1.43979 1.08721 1.50853 1.27561 1.19253 1.29729 0.97634 0.92113 0.91893 1.25752 1.02284 0.96370 0.98707 1.70142 1.42302 1.16972 1.26690 0.85503 0.78256 0.76798 0.81194 1.21004 1.23261 1.19712 1.20854 0.89975 0.91578 0.96425 1.22223 1.00499 0.98018 1.00539 1.20361 0.94942 0.95435 1.07385 0.91824 0.87890 0.92312 0.90675 0.91410 0.83285 0.83018 0.84901 0.86404 0.85585 0.75220 0.93258 0.93530 0.93240 0.93736 0.93574 0.94326 0.95132 0.93950 0.92700 0.93636 0.93739 0.86140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 10.28 71.98 0.74 -1.03 16 2 C 0.04 0.70 5.46 71.98 0.39 1.09 16 3 O -0.34 -8.31 10.14 -92.41 -0.94 -9.25 16 4 C 0.12 3.02 6.69 22.51 0.15 3.17 16 5 C -0.21 -4.58 9.04 22.37 0.20 -4.38 16 6 C -0.08 -1.70 10.04 22.25 0.22 -1.47 16 7 C -0.16 -3.80 9.69 22.28 0.22 -3.58 16 8 C -0.03 -0.83 4.37 -19.88 -0.09 -0.91 16 9 C -0.10 -2.58 5.83 29.10 0.17 -2.41 16 10 C 0.51 17.32 7.78 87.66 0.68 18.00 16 11 O -0.59 -24.20 16.03 -3.05 -0.05 -24.25 16 12 N -0.70 -24.63 4.28 -463.07 -1.98 -26.62 16 13 C 0.12 4.48 4.36 86.38 0.38 4.86 16 14 C 0.18 7.65 1.95 44.99 0.09 7.74 16 15 H 0.07 3.54 5.94 -2.38 -0.01 3.53 16 16 C -0.14 -5.51 9.05 71.98 0.65 -4.85 16 17 N -0.59 -25.80 1.88 -678.04 -1.28 -27.08 16 18 C -0.26 -12.38 9.07 84.03 0.76 -11.62 16 19 H 0.06 3.02 7.89 -2.91 -0.02 2.99 16 20 C -0.03 -1.70 4.86 84.86 0.41 -1.28 16 21 N -0.92 -49.20 10.90 21.65 0.24 -48.96 16 22 Si 0.95 41.29 29.59 68.60 2.03 43.32 16 23 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.31 -13.83 7.11 99.48 0.71 -13.13 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 C 0.14 5.32 5.75 86.38 0.50 5.82 16 27 C -0.15 -5.11 9.95 71.98 0.72 -4.40 16 28 C -0.16 -4.64 9.64 22.37 0.22 -4.43 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.08 0.93 7.66 -2.39 -0.02 0.91 16 33 H 0.07 0.94 7.66 -2.39 -0.02 0.92 16 34 H 0.15 2.29 6.30 -2.91 -0.02 2.27 16 35 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 36 H 0.13 2.85 8.06 -2.91 -0.02 2.82 16 37 H 0.12 2.65 8.08 -2.39 -0.02 2.63 16 38 H 0.13 2.68 8.08 -2.39 -0.02 2.66 16 39 H 0.41 14.61 7.74 -92.71 -0.72 13.89 16 40 H 0.05 1.92 6.98 -2.39 -0.02 1.90 16 41 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 43 H 0.04 1.65 6.56 -2.39 -0.02 1.64 16 44 H 0.05 2.14 7.69 -2.38 -0.02 2.12 16 45 H 0.25 13.18 8.31 -92.71 -0.77 12.41 16 46 H 0.03 1.23 8.09 -2.39 -0.02 1.21 16 47 H 0.04 1.59 6.29 -2.39 -0.02 1.57 16 48 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 49 H 0.04 1.57 5.32 -2.39 -0.01 1.56 16 50 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 51 H 0.12 3.43 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -62.86 407.71 4.63 -58.23 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: 0.20 Total: 34.31 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 6.41 Total: 0.29 kcal Atomic # 7 Polarization: -99.63 SS G_CDS: -3.02 Total: -102.66 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -0.99 Total: -33.50 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -62.86 4.63 -58.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157158529.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.022 kcal (2) G-P(sol) polarization free energy of solvation -62.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds