Wall clock time and date at job start Tue Mar 31 2020 19:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42895 * 109.47317 * 2 1 4 4 C 1.42903 * 113.99992 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47106 * 30.00181 * 4 3 2 6 6 C 1.50699 * 109.46971 * 269.99904 * 4 3 2 7 7 O 1.21280 * 120.00290 * 355.00314 * 6 4 3 8 8 N 1.34789 * 119.99750 * 174.99930 * 6 4 3 9 9 C 1.46500 * 119.99550 * 180.02562 * 8 6 4 10 10 C 1.53000 * 109.46614 * 180.02562 * 9 8 6 11 11 H 1.08998 * 109.47093 * 65.00241 * 10 9 8 12 12 C 1.53002 * 109.47075 * 185.00109 * 10 9 8 13 13 N 1.46503 * 109.47468 * 305.00165 * 10 9 8 14 14 C 1.36930 * 120.00378 * 119.99916 * 13 10 9 15 15 H 1.08001 * 119.99870 * 320.38972 * 14 13 10 16 16 C 1.38809 * 120.00587 * 140.38979 * 14 13 10 17 17 N 1.31618 * 120.00563 * 156.48924 * 16 14 13 18 18 Si 1.86810 * 119.99542 * 336.48992 * 16 14 13 19 19 H 1.48496 * 109.46807 * 95.30028 * 18 16 14 20 20 H 1.48500 * 109.47010 * 215.30089 * 18 16 14 21 21 H 1.48498 * 109.47033 * 335.30399 * 18 16 14 22 22 C 1.46508 * 119.99763 * 300.00461 * 13 10 9 23 23 C 1.52994 * 109.47313 * 94.57333 * 22 13 10 24 24 C 1.50698 * 109.46808 * 150.00277 * 4 3 2 25 25 C 1.38239 * 119.99832 * 219.99835 * 24 4 3 26 26 C 1.38231 * 119.99990 * 180.02562 * 25 24 4 27 27 C 1.38239 * 120.00416 * 359.95429 * 26 25 24 28 28 C 1.38240 * 119.99355 * 0.02562 * 27 26 25 29 29 C 1.38229 * 120.00291 * 0.06615 * 28 27 26 30 30 H 1.08994 * 109.46974 * 299.99789 * 1 2 3 31 31 H 1.08999 * 109.46587 * 60.00093 * 1 2 3 32 32 H 1.08995 * 109.46978 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47191 * 239.99806 * 2 1 3 34 34 H 1.09000 * 109.47219 * 120.00324 * 2 1 3 35 35 H 0.97002 * 119.99601 * 0.02562 * 8 6 4 36 36 H 1.08997 * 109.47548 * 299.99881 * 9 8 6 37 37 H 1.09001 * 109.46812 * 60.00816 * 9 8 6 38 38 H 1.08998 * 109.46936 * 300.00174 * 12 10 9 39 39 H 1.08998 * 109.47052 * 60.00107 * 12 10 9 40 40 H 1.09000 * 109.47093 * 179.97438 * 12 10 9 41 41 H 0.97001 * 120.00129 * 179.97438 * 17 16 14 42 42 H 1.08996 * 109.46710 * 214.57107 * 22 13 10 43 43 H 1.09004 * 109.46551 * 334.57048 * 22 13 10 44 44 H 1.08997 * 109.47061 * 180.02562 * 23 22 13 45 45 H 1.09006 * 109.47002 * 299.99754 * 23 22 13 46 46 H 1.08998 * 109.47256 * 59.99684 * 23 22 13 47 47 H 1.08002 * 119.99739 * 359.97438 * 25 24 4 48 48 H 1.08000 * 119.99860 * 179.97438 * 26 25 24 49 49 H 1.07990 * 120.00327 * 179.72678 * 27 26 25 50 50 H 1.08002 * 119.99500 * 179.97438 * 28 27 26 51 51 H 1.08000 * 119.99924 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 0.0006 5 1 3.8636 0.6014 -0.5130 6 6 3.9311 1.4999 1.4216 7 8 3.1416 1.5293 2.3418 8 7 5.2559 1.5027 1.6699 9 6 5.7421 1.5409 3.0514 10 6 7.2721 1.5367 3.0538 11 1 7.6386 2.4543 2.5936 12 6 7.7795 1.4507 4.4946 13 7 7.7585 0.3817 2.2950 14 6 8.5480 0.5702 1.1922 15 1 8.3367 1.3793 0.5087 16 6 9.6199 -0.2785 0.9527 17 7 10.0870 -0.4201 -0.2696 18 14 10.3997 -1.2198 2.3654 19 1 9.8062 -2.5789 2.4419 20 1 11.8630 -1.3308 2.1383 21 1 10.1496 -0.4981 3.6389 22 6 7.4001 -0.9750 2.7161 23 6 6.1632 -1.4386 1.9442 24 6 3.8348 2.7262 -0.7098 25 6 4.9335 2.7277 -1.5487 26 6 5.3043 3.8892 -2.1999 27 6 4.5760 5.0492 -2.0130 28 6 3.4770 5.0476 -1.1744 29 6 3.1073 3.8865 -0.5217 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 5.8873 1.4795 0.9339 36 1 5.3809 2.4465 3.5388 37 1 5.3751 0.6672 3.5899 38 1 7.4177 2.3101 5.0591 39 1 7.4130 0.5332 4.9548 40 1 8.8695 1.4473 4.4963 41 1 10.8363 -1.0130 -0.4369 42 1 8.2306 -1.6503 2.5109 43 1 7.1841 -0.9786 3.7845 44 1 5.8963 -2.4477 2.2578 45 1 5.3326 -0.7631 2.1493 46 1 6.3791 -1.4348 0.8758 47 1 5.5027 1.8215 -1.6947 48 1 6.1630 3.8905 -2.8551 49 1 4.8683 5.9577 -2.5183 50 1 2.9082 5.9539 -1.0280 51 1 2.2490 3.8854 0.1338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157241279.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:57 Heat of formation + Delta-G solvation = -51.259391 kcal Electronic energy + Delta-G solvation = -30719.526816 eV Core-core repulsion = 26812.109313 eV Total energy + Delta-G solvation = -3907.417503 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.44324 -39.85543 -39.02782 -38.24198 -35.46345 -34.10819 -33.51979 -32.75239 -31.84715 -31.46709 -30.43250 -28.50802 -26.42069 -25.51174 -24.11796 -23.91800 -23.31126 -22.77756 -21.28172 -20.85503 -18.84817 -18.53941 -18.17004 -17.78460 -17.52901 -16.84307 -16.54014 -16.36093 -16.07977 -15.64119 -15.51470 -15.03258 -14.90383 -14.75191 -14.52722 -14.37600 -14.25836 -14.04724 -13.74717 -13.60849 -13.46872 -13.31318 -13.16154 -12.95184 -12.87747 -12.79454 -12.62339 -12.56683 -12.26256 -12.14564 -12.03904 -11.85546 -11.78881 -11.51174 -11.41444 -11.33967 -10.53225 -10.47418 -9.97362 -9.83136 -9.67120 -8.71457 -8.14760 -5.51978 0.31107 0.49402 1.34058 1.45694 1.54756 1.55844 2.07516 2.47685 2.61195 2.98560 3.10216 3.34086 3.62825 3.80170 3.83013 4.00708 4.10141 4.14991 4.16774 4.27801 4.29738 4.34249 4.38459 4.43349 4.51417 4.61156 4.66808 4.68229 4.71074 4.75825 4.81011 4.83541 4.87355 4.99946 5.01197 5.07682 5.14654 5.19933 5.22425 5.26852 5.36039 5.49014 5.53948 5.57277 5.58256 5.61303 6.00429 6.00866 6.07696 6.26195 6.59803 7.04893 7.21885 7.68620 8.13910 9.03714 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011083 B = 0.004171 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.716867 B = 6710.616898 C = 7633.549487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.046 3.954 3 O -0.366 6.366 4 C 0.122 3.878 5 H 0.100 0.900 6 C 0.495 3.505 7 O -0.571 6.571 8 N -0.697 5.697 9 C 0.117 3.883 10 C 0.156 3.844 11 H 0.072 0.928 12 C -0.156 4.156 13 N -0.603 5.603 14 C -0.245 4.245 15 H 0.055 0.945 16 C -0.005 4.005 17 N -0.939 5.939 18 Si 0.925 3.075 19 H -0.285 1.285 20 H -0.317 1.317 21 H -0.257 1.257 22 C 0.129 3.871 23 C -0.156 4.156 24 C -0.099 4.099 25 C -0.112 4.112 26 C -0.124 4.124 27 C -0.112 4.112 28 C -0.125 4.125 29 C -0.102 4.102 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.038 0.962 35 H 0.409 0.591 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.259 0.741 42 H 0.027 0.973 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.037 0.963 47 H 0.126 0.874 48 H 0.140 0.860 49 H 0.150 0.850 50 H 0.146 0.854 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.144 5.893 -0.609 15.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.030 4.030 3 O -0.284 6.284 4 C 0.060 3.940 5 H 0.118 0.882 6 C 0.281 3.719 7 O -0.451 6.451 8 N -0.349 5.349 9 C -0.009 4.009 10 C 0.050 3.950 11 H 0.090 0.910 12 C -0.215 4.215 13 N -0.327 5.327 14 C -0.374 4.374 15 H 0.073 0.927 16 C -0.203 4.203 17 N -0.583 5.583 18 Si 0.756 3.244 19 H -0.213 1.213 20 H -0.247 1.247 21 H -0.181 1.181 22 C 0.004 3.996 23 C -0.215 4.215 24 C -0.100 4.100 25 C -0.131 4.131 26 C -0.141 4.141 27 C -0.129 4.129 28 C -0.143 4.143 29 C -0.120 4.120 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.245 0.755 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.045 0.955 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.144 0.856 48 H 0.158 0.842 49 H 0.168 0.832 50 H 0.164 0.836 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.718 6.008 -0.033 15.897 hybrid contribution 1.381 -1.149 0.193 1.807 sum -13.337 4.858 0.160 14.195 Atomic orbital electron populations 1.21700 0.91769 1.03563 1.02826 1.22795 0.97294 0.82588 1.00299 1.87950 1.17765 1.28212 1.94448 1.20654 0.83704 0.98202 0.91413 0.88200 1.21352 0.82649 0.76008 0.91913 1.90638 1.56076 1.51549 1.46880 1.45952 1.06365 1.72508 1.10062 1.21833 0.95550 1.01075 0.82413 1.20853 0.90406 0.91069 0.92696 0.91011 1.22139 1.00869 1.02213 0.96262 1.44262 1.57366 1.00519 1.30513 1.18592 1.05364 1.14848 0.98640 0.92721 1.25934 0.97483 0.99935 0.96939 1.69974 1.27857 1.40059 1.20410 0.86147 0.76143 0.78828 0.83282 1.21315 1.24666 1.18069 1.21099 0.95169 0.86145 0.97169 1.22218 0.98776 0.99978 1.00557 1.19354 0.97655 0.93595 0.99373 1.21161 0.95885 0.99854 0.96162 1.21399 1.00343 0.92575 0.99819 1.21549 0.94745 0.98849 0.97793 1.21428 0.97790 0.98151 0.96906 1.21054 0.99117 0.92571 0.99263 0.92721 0.91347 0.88886 0.91739 0.94350 0.75467 0.91492 0.92416 0.90448 0.92695 0.93576 0.93175 0.95511 0.92045 0.92764 0.92674 0.94357 0.85634 0.84205 0.83216 0.83646 0.86541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 10.28 71.98 0.74 -2.00 16 2 C 0.05 1.14 6.46 71.98 0.46 1.60 16 3 O -0.37 -10.91 8.85 -129.99 -1.15 -12.06 16 4 C 0.12 3.62 2.72 29.10 0.08 3.70 16 5 H 0.10 2.74 7.65 -2.39 -0.02 2.72 16 6 C 0.49 16.85 6.87 87.65 0.60 17.45 16 7 O -0.57 -22.75 16.51 15.96 0.26 -22.49 16 8 N -0.70 -23.09 3.94 -463.05 -1.83 -24.92 16 9 C 0.12 3.75 4.33 86.38 0.37 4.13 16 10 C 0.16 5.35 2.87 44.99 0.13 5.48 16 11 H 0.07 2.56 7.89 -2.39 -0.02 2.54 16 12 C -0.16 -4.66 9.18 71.98 0.66 -4.00 16 13 N -0.60 -24.64 1.42 -678.03 -0.96 -25.60 16 14 C -0.24 -12.12 9.50 84.03 0.80 -11.33 16 15 H 0.06 2.94 8.06 -2.91 -0.02 2.91 16 16 C -0.01 -0.29 5.29 84.86 0.45 0.16 16 17 N -0.94 -54.48 13.97 21.65 0.30 -54.17 16 18 Si 0.93 43.78 25.23 68.60 1.73 45.51 16 19 H -0.29 -13.26 6.66 99.48 0.66 -12.59 16 20 H -0.32 -15.63 7.11 99.48 0.71 -14.92 16 21 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 22 C 0.13 5.03 4.70 86.38 0.41 5.44 16 23 C -0.16 -5.59 9.83 71.98 0.71 -4.89 16 24 C -0.10 -2.79 4.92 -19.87 -0.10 -2.89 16 25 C -0.11 -3.01 9.67 22.27 0.22 -2.79 16 26 C -0.12 -2.89 10.05 22.27 0.22 -2.66 16 27 C -0.11 -2.28 10.05 22.27 0.22 -2.06 16 28 C -0.12 -2.72 10.05 22.27 0.22 -2.50 16 29 C -0.10 -2.73 9.35 22.27 0.21 -2.52 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.36 8.09 -2.39 -0.02 1.34 16 34 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.41 14.21 7.89 -92.71 -0.73 13.48 16 36 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.06 1.92 6.97 -2.39 -0.02 1.90 16 38 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.05 1.59 6.66 -2.39 -0.02 1.57 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 42 H 0.03 1.18 3.44 -2.39 -0.01 1.17 16 43 H 0.06 2.13 6.43 -2.38 -0.02 2.12 16 44 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.05 1.91 4.89 -2.38 -0.01 1.90 16 46 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.13 3.37 8.04 -2.91 -0.02 3.34 16 48 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 49 H 0.15 2.16 8.06 -2.92 -0.02 2.14 16 50 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 51 H 0.12 3.28 7.78 -2.91 -0.02 3.26 16 Total: -1.00 -64.04 406.46 4.90 -59.14 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: 0.14 Total: 34.28 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 6.41 Total: 0.31 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -2.48 Total: -104.69 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -0.89 Total: -34.55 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.73 Total: 45.51 kcal Total: -64.04 4.90 -59.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157241279.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.882 kcal (2) G-P(sol) polarization free energy of solvation -64.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds