Wall clock time and date at job start Tue Mar 31 2020 19:19:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 N 1.46506 * 109.47139 * 2 1
4 4 C 1.36933 * 120.00412 * 84.20892 * 3 2 1
5 5 H 1.08002 * 119.99938 * 214.52219 * 4 3 2
6 6 C 1.38808 * 119.99955 * 34.79365 * 4 3 2
7 7 N 1.31622 * 119.99839 * 214.57543 * 6 4 3
8 8 Si 1.86800 * 120.00032 * 34.57706 * 6 4 3
9 9 H 1.48509 * 109.46857 * 92.60319 * 8 6 4
10 10 H 1.48502 * 109.47289 * 212.60028 * 8 6 4
11 11 H 1.48490 * 109.47189 * 332.60351 * 8 6 4
12 12 C 1.46506 * 119.99699 * 264.20368 * 3 2 1
13 13 H 1.08994 * 109.47083 * 179.18566 * 12 3 2
14 14 C 1.53005 * 109.46611 * 59.19045 * 12 3 2
15 15 C 1.53001 * 109.47116 * 299.19351 * 12 3 2
16 16 N 1.46502 * 109.46805 * 301.37673 * 15 12 3
17 17 C 1.34784 * 119.99551 * 183.48305 * 16 15 12
18 18 O 1.21274 * 120.00169 * 5.08087 * 17 16 15
19 19 C 1.50698 * 119.99522 * 185.07610 * 17 16 15
20 20 O 1.42896 * 109.46945 * 182.76705 * 19 17 16
21 21 C 1.42902 * 114.00331 * 180.02562 * 20 19 17
22 22 C 1.53001 * 109.47300 * 180.02562 * 21 20 19
23 23 C 1.50698 * 109.46832 * 179.97438 * 22 21 20
24 24 C 1.38232 * 120.00357 * 269.72707 * 23 22 21
25 25 C 1.38232 * 119.99901 * 179.77075 * 24 23 22
26 26 C 1.38232 * 120.00296 * 0.50007 * 25 24 23
27 27 C 1.38232 * 120.00059 * 359.75332 * 26 25 24
28 28 C 1.38239 * 119.99735 * 359.97438 * 27 26 25
29 29 H 1.09005 * 109.46668 * 305.94666 * 1 2 3
30 30 H 1.08994 * 109.47015 * 65.94244 * 1 2 3
31 31 H 1.08996 * 109.47004 * 185.94700 * 1 2 3
32 32 H 1.08999 * 109.47291 * 239.99477 * 2 1 3
33 33 H 1.09003 * 109.47391 * 119.99487 * 2 1 3
34 34 H 0.96998 * 119.99897 * 179.97438 * 7 6 4
35 35 H 1.08994 * 109.47007 * 299.99569 * 14 12 3
36 36 H 1.08993 * 109.47285 * 60.00263 * 14 12 3
37 37 H 1.09005 * 109.46866 * 179.97438 * 14 12 3
38 38 H 1.08999 * 109.47260 * 61.37940 * 15 12 3
39 39 H 1.08999 * 109.46874 * 181.38134 * 15 12 3
40 40 H 0.96998 * 120.00021 * 3.48614 * 16 15 12
41 41 H 1.08997 * 109.47434 * 302.76950 * 19 17 16
42 42 H 1.09004 * 109.47349 * 62.77027 * 19 17 16
43 43 H 1.09002 * 109.46607 * 299.99986 * 21 20 19
44 44 H 1.08997 * 109.47410 * 59.99704 * 21 20 19
45 45 H 1.08993 * 109.47200 * 299.99753 * 22 21 20
46 46 H 1.09003 * 109.46811 * 59.99835 * 22 21 20
47 47 H 1.08001 * 120.00146 * 359.97438 * 24 23 22
48 48 H 1.08006 * 120.00129 * 180.22588 * 25 24 23
49 49 H 1.08000 * 120.00271 * 179.72299 * 26 25 24
50 50 H 1.08001 * 120.00830 * 179.97438 * 27 26 25
51 51 H 1.08004 * 119.99965 * 179.97438 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3813 0.0000
4 6 2.1338 2.0667 1.1798
5 1 1.9412 3.1291 1.2081
6 6 2.5038 1.3973 2.3381
7 7 2.0037 1.7648 3.4988
8 14 3.7114 -0.0251 2.2495
9 1 5.0905 0.4823 2.4648
10 1 3.3809 -1.0213 3.3001
11 1 3.6231 -0.6669 0.9134
12 6 2.3833 2.0291 -1.2623
13 1 2.7078 3.0509 -1.0658
14 6 1.1700 2.0498 -2.1943
15 6 3.5219 1.2507 -1.9246
16 7 4.6722 1.2028 -1.0185
17 6 5.8223 0.6256 -1.4196
18 8 5.9361 0.2287 -2.5599
19 6 6.9668 0.4737 -0.4511
20 8 8.0873 -0.1032 -1.1246
21 6 9.2326 -0.2916 -0.2910
22 6 10.3650 -0.9111 -1.1126
23 6 11.5729 -1.1092 -0.2336
24 6 12.5193 -0.1077 -0.1233
25 6 13.6249 -0.2877 0.6867
26 6 13.7894 -1.4731 1.3783
27 6 12.8457 -2.4767 1.2640
28 6 11.7372 -2.2946 0.4584
29 1 -0.3633 0.6033 0.8320
30 1 -0.3633 0.4189 -0.9384
31 1 -0.3633 -1.0221 0.1065
32 1 1.8934 -0.5139 -0.8899
33 1 1.8934 -0.5138 0.8900
34 1 2.2620 1.2967 4.3082
35 1 0.8455 1.0280 -2.3909
36 1 0.3589 2.6043 -1.7226
37 1 1.4414 2.5322 -3.1334
38 1 3.1892 0.2361 -2.1434
39 1 3.8100 1.7465 -2.8515
40 1 4.6061 1.5863 -0.1301
41 1 7.2431 1.4524 -0.0588
42 1 6.6636 -0.1749 0.3708
43 1 9.5560 0.6710 0.1049
44 1 8.9762 -0.9562 0.5340
45 1 10.0418 -1.8736 -1.5089
46 1 10.6213 -0.2460 -1.9373
47 1 12.3933 0.8167 -0.6675
48 1 14.3625 0.4963 0.7757
49 1 14.6555 -1.6154 2.0077
50 1 12.9744 -3.4031 1.8041
51 1 11.0001 -3.0789 0.3688
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001157287224.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:19:08
Heat of formation + Delta-G solvation = -38.065923 kcal
Electronic energy + Delta-G solvation = -28669.421245 eV
Core-core repulsion = 24762.575855 eV
Total energy + Delta-G solvation = -3906.845391 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-39.69891 -39.40476 -37.77005 -36.98508 -33.98476 -33.67472 -32.23878 -31.17784
-31.06647 -29.43113 -28.84465 -27.68827 -25.13330 -23.73059 -23.54002 -22.86309
-22.31141 -21.20550 -20.13431 -19.39580 -17.21679 -16.92348 -16.90431 -16.53880
-16.49821 -15.65682 -15.47295 -15.39864 -15.09740 -14.76882 -14.33625 -14.21581
-13.69400 -13.37393 -13.25840 -13.21173 -13.03760 -12.82742 -12.62187 -12.49411
-12.29213 -12.05199 -11.91022 -11.67018 -11.54180 -11.50904 -11.43038 -11.33389
-11.15378 -10.86558 -10.76733 -10.34688 -10.06343 -9.89142 -9.74719 -9.49378
-9.33621 -9.20930 -9.00965 -8.60350 -8.49627 -6.98007 -6.19977 -3.44280
1.03265 1.11034 2.91720 3.01401 3.19891 3.37451 3.39404 3.50586
4.09492 4.42242 4.54339 4.63745 4.74792 4.80641 4.85712 4.88106
4.97370 5.15658 5.17247 5.21756 5.22560 5.25343 5.26122 5.31082
5.45505 5.60832 5.64710 5.75968 5.79709 5.86412 5.95020 5.98679
6.05140 6.17114 6.18322 6.22413 6.25555 6.35587 6.35681 6.41744
6.59650 6.67588 6.71309 6.74067 6.89350 6.92521 7.03373 7.19343
7.90635 7.95372 8.26441 8.58311 8.89469 9.61672 10.06010 10.95816
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.015789 B = 0.002418 C = 0.002217
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1772.919144 B =11576.405498 C =12626.001530
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.142 3.858
3 N -0.595 5.595
4 C -0.280 4.280
5 H 0.077 0.923
6 C 0.050 3.950
7 N -0.874 5.874
8 Si 0.826 3.174
9 H -0.290 1.290
10 H -0.294 1.294
11 H -0.251 1.251
12 C 0.155 3.845
13 H 0.078 0.922
14 C -0.156 4.156
15 C 0.105 3.895
16 N -0.709 5.709
17 C 0.511 3.489
18 O -0.536 6.536
19 C 0.042 3.958
20 O -0.363 6.363
21 C 0.065 3.935
22 C -0.078 4.078
23 C -0.080 4.080
24 C -0.114 4.114
25 C -0.119 4.119
26 C -0.124 4.124
27 C -0.119 4.119
28 C -0.114 4.114
29 H 0.062 0.938
30 H 0.044 0.956
31 H 0.033 0.967
32 H 0.037 0.963
33 H 0.047 0.953
34 H 0.264 0.736
35 H 0.052 0.948
36 H 0.060 0.940
37 H 0.046 0.954
38 H 0.058 0.942
39 H 0.062 0.938
40 H 0.410 0.590
41 H 0.079 0.921
42 H 0.078 0.922
43 H 0.052 0.948
44 H 0.052 0.948
45 H 0.083 0.917
46 H 0.083 0.917
47 H 0.123 0.877
48 H 0.122 0.878
49 H 0.120 0.880
50 H 0.122 0.878
51 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.933 -4.254 -5.748 18.381
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C 0.017 3.983
3 N -0.317 5.317
4 C -0.408 4.408
5 H 0.094 0.906
6 C -0.152 4.152
7 N -0.513 5.513
8 Si 0.652 3.348
9 H -0.218 1.218
10 H -0.221 1.221
11 H -0.176 1.176
12 C 0.048 3.952
13 H 0.096 0.904
14 C -0.215 4.215
15 C -0.020 4.020
16 N -0.362 5.362
17 C 0.296 3.704
18 O -0.413 6.413
19 C -0.038 4.038
20 O -0.281 6.281
21 C -0.012 4.012
22 C -0.116 4.116
23 C -0.081 4.081
24 C -0.132 4.132
25 C -0.137 4.137
26 C -0.143 4.143
27 C -0.137 4.137
28 C -0.132 4.132
29 H 0.082 0.918
30 H 0.063 0.937
31 H 0.052 0.948
32 H 0.056 0.944
33 H 0.065 0.935
34 H 0.073 0.927
35 H 0.071 0.929
36 H 0.079 0.921
37 H 0.065 0.935
38 H 0.077 0.923
39 H 0.080 0.920
40 H 0.247 0.753
41 H 0.097 0.903
42 H 0.096 0.904
43 H 0.071 0.929
44 H 0.070 0.930
45 H 0.101 0.899
46 H 0.102 0.898
47 H 0.141 0.859
48 H 0.140 0.860
49 H 0.139 0.861
50 H 0.140 0.860
51 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges 16.965 -4.607 -6.552 18.761
hybrid contribution 0.695 -0.681 1.121 1.484
sum 17.660 -5.287 -5.431 19.218
Atomic orbital electron populations
1.22339 0.99084 0.99416 1.01741 1.21093 0.92259 0.86281 0.98701
1.44187 1.73830 1.11585 1.02124 1.18665 1.43309 0.94676 0.84147
0.90564 1.25385 0.98189 0.96684 0.94961 1.70078 1.39838 1.42279
0.99108 0.87809 0.84082 0.84270 0.78593 1.21755 1.22060 1.17556
1.20805 0.91041 0.96425 0.86975 0.90426 1.22205 0.99258 1.01545
0.98524 1.22024 0.86313 1.01330 0.92377 1.45863 1.11695 1.59000
1.19655 1.20080 0.83487 0.78431 0.88394 1.90667 1.82094 1.49073
1.19427 1.22266 0.87142 0.99590 0.94839 1.87952 1.21078 1.83005
1.36037 1.22510 0.85753 0.99694 0.93254 1.20454 0.91002 1.02880
0.97241 1.19765 0.95951 0.94390 0.97947 1.21122 0.94253 0.98771
0.99097 1.21163 0.97884 0.97608 0.97095 1.21174 0.99324 0.93934
0.99821 1.21170 0.94504 0.99196 0.98855 1.21140 0.97987 0.97248
0.96875 0.91849 0.93685 0.94773 0.94434 0.93511 0.92660 0.92895
0.92060 0.93468 0.92330 0.92019 0.75342 0.90292 0.90416 0.92935
0.93001 0.89855 0.89842 0.85861 0.86011 0.86148 0.86010 0.85867
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.13 9.96 37.16 0.37 -2.76 16
2 C 0.14 2.90 4.22 -4.04 -0.02 2.89 16
3 N -0.59 -12.46 1.60 -165.65 -0.26 -12.72 16
4 C -0.28 -6.95 9.44 -15.06 -0.14 -7.10 16
5 H 0.08 2.06 8.06 -52.49 -0.42 1.64 16
6 C 0.05 1.32 5.10 -17.43 -0.09 1.23 16
7 N -0.87 -24.74 13.97 55.49 0.78 -23.96 16
8 Si 0.83 19.25 24.97 -169.99 -4.24 15.01 16
9 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16
10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16
11 H -0.25 -5.63 5.68 56.52 0.32 -5.31 16
12 C 0.16 2.74 2.83 -67.92 -0.19 2.55 16
13 H 0.08 1.38 7.89 -51.93 -0.41 0.97 16
14 C -0.16 -2.38 8.32 37.16 0.31 -2.07 16
15 C 0.11 1.82 5.01 -4.04 -0.02 1.80 16
16 N -0.71 -12.87 5.41 -60.29 -0.33 -13.20 16
17 C 0.51 9.49 7.90 -10.98 -0.09 9.41 16
18 O -0.54 -11.52 16.50 -14.33 -0.24 -11.76 16
19 C 0.04 0.65 6.42 36.00 0.23 0.89 16
20 O -0.36 -5.72 9.88 -55.13 -0.54 -6.26 16
21 C 0.06 0.78 5.92 37.16 0.22 1.00 16
22 C -0.08 -0.82 5.72 -27.88 -0.16 -0.98 16
23 C -0.08 -0.79 5.13 -104.62 -0.54 -1.33 16
24 C -0.11 -1.04 9.70 -39.59 -0.38 -1.42 16
25 C -0.12 -0.99 10.05 -39.59 -0.40 -1.38 16
26 C -0.12 -1.00 10.05 -39.59 -0.40 -1.40 16
27 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16
28 C -0.11 -1.07 9.70 -39.58 -0.38 -1.45 16
29 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16
30 H 0.04 0.77 6.20 -51.93 -0.32 0.44 16
31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16
32 H 0.04 0.72 6.51 -51.93 -0.34 0.38 16
33 H 0.05 1.05 3.83 -51.93 -0.20 0.85 16
34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16
35 H 0.05 0.80 6.55 -51.93 -0.34 0.46 16
36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16
37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
38 H 0.06 1.07 6.75 -51.93 -0.35 0.72 16
39 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16
40 H 0.41 7.66 6.57 -40.82 -0.27 7.39 16
41 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16
42 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16
43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
44 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16
45 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16
46 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16
47 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16
48 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16
49 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16
50 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16
51 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16
LS Contribution 408.12 15.07 6.15 6.15
Total: -1.00 -30.39 408.12 -9.39 -39.78
By element:
Atomic # 1 Polarization: 17.12 SS G_CDS: -8.62 Total: 8.50 kcal
Atomic # 6 Polarization: 0.54 SS G_CDS: -2.07 Total: -1.53 kcal
Atomic # 7 Polarization: -50.07 SS G_CDS: 0.18 Total: -49.88 kcal
Atomic # 8 Polarization: -17.24 SS G_CDS: -0.78 Total: -18.02 kcal
Atomic # 14 Polarization: 19.25 SS G_CDS: -4.24 Total: 15.01 kcal
Total LS contribution 6.15 Total: 6.15 kcal
Total: -30.39 -9.39 -39.78 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001157287224.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.717 kcal
(2) G-P(sol) polarization free energy of solvation -30.395 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.677 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.783 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.066 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds