Wall clock time and date at job start Tue Mar 31 2020 19:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.47139 * 2 1 4 4 C 1.36933 * 120.00412 * 84.20892 * 3 2 1 5 5 H 1.08002 * 119.99938 * 214.52219 * 4 3 2 6 6 C 1.38808 * 119.99955 * 34.79365 * 4 3 2 7 7 N 1.31622 * 119.99839 * 214.57543 * 6 4 3 8 8 Si 1.86800 * 120.00032 * 34.57706 * 6 4 3 9 9 H 1.48509 * 109.46857 * 92.60319 * 8 6 4 10 10 H 1.48502 * 109.47289 * 212.60028 * 8 6 4 11 11 H 1.48490 * 109.47189 * 332.60351 * 8 6 4 12 12 C 1.46506 * 119.99699 * 264.20368 * 3 2 1 13 13 H 1.08994 * 109.47083 * 179.18566 * 12 3 2 14 14 C 1.53005 * 109.46611 * 59.19045 * 12 3 2 15 15 C 1.53001 * 109.47116 * 299.19351 * 12 3 2 16 16 N 1.46502 * 109.46805 * 301.37673 * 15 12 3 17 17 C 1.34784 * 119.99551 * 183.48305 * 16 15 12 18 18 O 1.21274 * 120.00169 * 5.08087 * 17 16 15 19 19 C 1.50698 * 119.99522 * 185.07610 * 17 16 15 20 20 O 1.42896 * 109.46945 * 182.76705 * 19 17 16 21 21 C 1.42902 * 114.00331 * 180.02562 * 20 19 17 22 22 C 1.53001 * 109.47300 * 180.02562 * 21 20 19 23 23 C 1.50698 * 109.46832 * 179.97438 * 22 21 20 24 24 C 1.38232 * 120.00357 * 269.72707 * 23 22 21 25 25 C 1.38232 * 119.99901 * 179.77075 * 24 23 22 26 26 C 1.38232 * 120.00296 * 0.50007 * 25 24 23 27 27 C 1.38232 * 120.00059 * 359.75332 * 26 25 24 28 28 C 1.38239 * 119.99735 * 359.97438 * 27 26 25 29 29 H 1.09005 * 109.46668 * 305.94666 * 1 2 3 30 30 H 1.08994 * 109.47015 * 65.94244 * 1 2 3 31 31 H 1.08996 * 109.47004 * 185.94700 * 1 2 3 32 32 H 1.08999 * 109.47291 * 239.99477 * 2 1 3 33 33 H 1.09003 * 109.47391 * 119.99487 * 2 1 3 34 34 H 0.96998 * 119.99897 * 179.97438 * 7 6 4 35 35 H 1.08994 * 109.47007 * 299.99569 * 14 12 3 36 36 H 1.08993 * 109.47285 * 60.00263 * 14 12 3 37 37 H 1.09005 * 109.46866 * 179.97438 * 14 12 3 38 38 H 1.08999 * 109.47260 * 61.37940 * 15 12 3 39 39 H 1.08999 * 109.46874 * 181.38134 * 15 12 3 40 40 H 0.96998 * 120.00021 * 3.48614 * 16 15 12 41 41 H 1.08997 * 109.47434 * 302.76950 * 19 17 16 42 42 H 1.09004 * 109.47349 * 62.77027 * 19 17 16 43 43 H 1.09002 * 109.46607 * 299.99986 * 21 20 19 44 44 H 1.08997 * 109.47410 * 59.99704 * 21 20 19 45 45 H 1.08993 * 109.47200 * 299.99753 * 22 21 20 46 46 H 1.09003 * 109.46811 * 59.99835 * 22 21 20 47 47 H 1.08001 * 120.00146 * 359.97438 * 24 23 22 48 48 H 1.08006 * 120.00129 * 180.22588 * 25 24 23 49 49 H 1.08000 * 120.00271 * 179.72299 * 26 25 24 50 50 H 1.08001 * 120.00830 * 179.97438 * 27 26 25 51 51 H 1.08004 * 119.99965 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1338 2.0667 1.1798 5 1 1.9412 3.1291 1.2081 6 6 2.5038 1.3973 2.3381 7 7 2.0037 1.7648 3.4988 8 14 3.7114 -0.0251 2.2495 9 1 5.0905 0.4823 2.4648 10 1 3.3809 -1.0213 3.3001 11 1 3.6231 -0.6669 0.9134 12 6 2.3833 2.0291 -1.2623 13 1 2.7078 3.0509 -1.0658 14 6 1.1700 2.0498 -2.1943 15 6 3.5219 1.2507 -1.9246 16 7 4.6722 1.2028 -1.0185 17 6 5.8223 0.6256 -1.4196 18 8 5.9361 0.2287 -2.5599 19 6 6.9668 0.4737 -0.4511 20 8 8.0873 -0.1032 -1.1246 21 6 9.2326 -0.2916 -0.2910 22 6 10.3650 -0.9111 -1.1126 23 6 11.5729 -1.1092 -0.2336 24 6 12.5193 -0.1077 -0.1233 25 6 13.6249 -0.2877 0.6867 26 6 13.7894 -1.4731 1.3783 27 6 12.8457 -2.4767 1.2640 28 6 11.7372 -2.2946 0.4584 29 1 -0.3633 0.6033 0.8320 30 1 -0.3633 0.4189 -0.9384 31 1 -0.3633 -1.0221 0.1065 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.2620 1.2967 4.3082 35 1 0.8455 1.0280 -2.3909 36 1 0.3589 2.6043 -1.7226 37 1 1.4414 2.5322 -3.1334 38 1 3.1892 0.2361 -2.1434 39 1 3.8100 1.7465 -2.8515 40 1 4.6061 1.5863 -0.1301 41 1 7.2431 1.4524 -0.0588 42 1 6.6636 -0.1749 0.3708 43 1 9.5560 0.6710 0.1049 44 1 8.9762 -0.9562 0.5340 45 1 10.0418 -1.8736 -1.5089 46 1 10.6213 -0.2460 -1.9373 47 1 12.3933 0.8167 -0.6675 48 1 14.3625 0.4963 0.7757 49 1 14.6555 -1.6154 2.0077 50 1 12.9744 -3.4031 1.8041 51 1 11.0001 -3.0789 0.3688 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157287224.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:08 Heat of formation + Delta-G solvation = -38.065923 kcal Electronic energy + Delta-G solvation = -28669.421245 eV Core-core repulsion = 24762.575855 eV Total energy + Delta-G solvation = -3906.845391 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.69891 -39.40476 -37.77005 -36.98508 -33.98476 -33.67472 -32.23878 -31.17784 -31.06647 -29.43113 -28.84465 -27.68827 -25.13330 -23.73059 -23.54002 -22.86309 -22.31141 -21.20550 -20.13431 -19.39580 -17.21679 -16.92348 -16.90431 -16.53880 -16.49821 -15.65682 -15.47295 -15.39864 -15.09740 -14.76882 -14.33625 -14.21581 -13.69400 -13.37393 -13.25840 -13.21173 -13.03760 -12.82742 -12.62187 -12.49411 -12.29213 -12.05199 -11.91022 -11.67018 -11.54180 -11.50904 -11.43038 -11.33389 -11.15378 -10.86558 -10.76733 -10.34688 -10.06343 -9.89142 -9.74719 -9.49378 -9.33621 -9.20930 -9.00965 -8.60350 -8.49627 -6.98007 -6.19977 -3.44280 1.03265 1.11034 2.91720 3.01401 3.19891 3.37451 3.39404 3.50586 4.09492 4.42242 4.54339 4.63745 4.74792 4.80641 4.85712 4.88106 4.97370 5.15658 5.17247 5.21756 5.22560 5.25343 5.26122 5.31082 5.45505 5.60832 5.64710 5.75968 5.79709 5.86412 5.95020 5.98679 6.05140 6.17114 6.18322 6.22413 6.25555 6.35587 6.35681 6.41744 6.59650 6.67588 6.71309 6.74067 6.89350 6.92521 7.03373 7.19343 7.90635 7.95372 8.26441 8.58311 8.89469 9.61672 10.06010 10.95816 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015789 B = 0.002418 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.919144 B =11576.405498 C =12626.001530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.142 3.858 3 N -0.595 5.595 4 C -0.280 4.280 5 H 0.077 0.923 6 C 0.050 3.950 7 N -0.874 5.874 8 Si 0.826 3.174 9 H -0.290 1.290 10 H -0.294 1.294 11 H -0.251 1.251 12 C 0.155 3.845 13 H 0.078 0.922 14 C -0.156 4.156 15 C 0.105 3.895 16 N -0.709 5.709 17 C 0.511 3.489 18 O -0.536 6.536 19 C 0.042 3.958 20 O -0.363 6.363 21 C 0.065 3.935 22 C -0.078 4.078 23 C -0.080 4.080 24 C -0.114 4.114 25 C -0.119 4.119 26 C -0.124 4.124 27 C -0.119 4.119 28 C -0.114 4.114 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.033 0.967 32 H 0.037 0.963 33 H 0.047 0.953 34 H 0.264 0.736 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.410 0.590 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.123 0.877 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.122 0.878 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.933 -4.254 -5.748 18.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.017 3.983 3 N -0.317 5.317 4 C -0.408 4.408 5 H 0.094 0.906 6 C -0.152 4.152 7 N -0.513 5.513 8 Si 0.652 3.348 9 H -0.218 1.218 10 H -0.221 1.221 11 H -0.176 1.176 12 C 0.048 3.952 13 H 0.096 0.904 14 C -0.215 4.215 15 C -0.020 4.020 16 N -0.362 5.362 17 C 0.296 3.704 18 O -0.413 6.413 19 C -0.038 4.038 20 O -0.281 6.281 21 C -0.012 4.012 22 C -0.116 4.116 23 C -0.081 4.081 24 C -0.132 4.132 25 C -0.137 4.137 26 C -0.143 4.143 27 C -0.137 4.137 28 C -0.132 4.132 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.247 0.753 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.101 0.899 46 H 0.102 0.898 47 H 0.141 0.859 48 H 0.140 0.860 49 H 0.139 0.861 50 H 0.140 0.860 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 16.965 -4.607 -6.552 18.761 hybrid contribution 0.695 -0.681 1.121 1.484 sum 17.660 -5.287 -5.431 19.218 Atomic orbital electron populations 1.22339 0.99084 0.99416 1.01741 1.21093 0.92259 0.86281 0.98701 1.44187 1.73830 1.11585 1.02124 1.18665 1.43309 0.94676 0.84147 0.90564 1.25385 0.98189 0.96684 0.94961 1.70078 1.39838 1.42279 0.99108 0.87809 0.84082 0.84270 0.78593 1.21755 1.22060 1.17556 1.20805 0.91041 0.96425 0.86975 0.90426 1.22205 0.99258 1.01545 0.98524 1.22024 0.86313 1.01330 0.92377 1.45863 1.11695 1.59000 1.19655 1.20080 0.83487 0.78431 0.88394 1.90667 1.82094 1.49073 1.19427 1.22266 0.87142 0.99590 0.94839 1.87952 1.21078 1.83005 1.36037 1.22510 0.85753 0.99694 0.93254 1.20454 0.91002 1.02880 0.97241 1.19765 0.95951 0.94390 0.97947 1.21122 0.94253 0.98771 0.99097 1.21163 0.97884 0.97608 0.97095 1.21174 0.99324 0.93934 0.99821 1.21170 0.94504 0.99196 0.98855 1.21140 0.97987 0.97248 0.96875 0.91849 0.93685 0.94773 0.94434 0.93511 0.92660 0.92895 0.92060 0.93468 0.92330 0.92019 0.75342 0.90292 0.90416 0.92935 0.93001 0.89855 0.89842 0.85861 0.86011 0.86148 0.86010 0.85867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 9.96 37.16 0.37 -2.76 16 2 C 0.14 2.90 4.22 -4.04 -0.02 2.89 16 3 N -0.59 -12.46 1.60 -165.65 -0.26 -12.72 16 4 C -0.28 -6.95 9.44 -15.06 -0.14 -7.10 16 5 H 0.08 2.06 8.06 -52.49 -0.42 1.64 16 6 C 0.05 1.32 5.10 -17.43 -0.09 1.23 16 7 N -0.87 -24.74 13.97 55.49 0.78 -23.96 16 8 Si 0.83 19.25 24.97 -169.99 -4.24 15.01 16 9 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.25 -5.63 5.68 56.52 0.32 -5.31 16 12 C 0.16 2.74 2.83 -67.92 -0.19 2.55 16 13 H 0.08 1.38 7.89 -51.93 -0.41 0.97 16 14 C -0.16 -2.38 8.32 37.16 0.31 -2.07 16 15 C 0.11 1.82 5.01 -4.04 -0.02 1.80 16 16 N -0.71 -12.87 5.41 -60.29 -0.33 -13.20 16 17 C 0.51 9.49 7.90 -10.98 -0.09 9.41 16 18 O -0.54 -11.52 16.50 -14.33 -0.24 -11.76 16 19 C 0.04 0.65 6.42 36.00 0.23 0.89 16 20 O -0.36 -5.72 9.88 -55.13 -0.54 -6.26 16 21 C 0.06 0.78 5.92 37.16 0.22 1.00 16 22 C -0.08 -0.82 5.72 -27.88 -0.16 -0.98 16 23 C -0.08 -0.79 5.13 -104.62 -0.54 -1.33 16 24 C -0.11 -1.04 9.70 -39.59 -0.38 -1.42 16 25 C -0.12 -0.99 10.05 -39.59 -0.40 -1.38 16 26 C -0.12 -1.00 10.05 -39.59 -0.40 -1.40 16 27 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 28 C -0.11 -1.07 9.70 -39.58 -0.38 -1.45 16 29 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.04 0.77 6.20 -51.93 -0.32 0.44 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.04 0.72 6.51 -51.93 -0.34 0.38 16 33 H 0.05 1.05 3.83 -51.93 -0.20 0.85 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.05 0.80 6.55 -51.93 -0.34 0.46 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 1.07 6.75 -51.93 -0.35 0.72 16 39 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 40 H 0.41 7.66 6.57 -40.82 -0.27 7.39 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 46 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 47 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 48 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 49 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 50 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 51 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 LS Contribution 408.12 15.07 6.15 6.15 Total: -1.00 -30.39 408.12 -9.39 -39.78 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -8.62 Total: 8.50 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -2.07 Total: -1.53 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: 0.18 Total: -49.88 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.78 Total: -18.02 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.24 Total: 15.01 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.39 -9.39 -39.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157287224.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.717 kcal (2) G-P(sol) polarization free energy of solvation -30.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds