Wall clock time and date at job start Tue Mar 31 2020 19:19:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 N 1.46506 * 109.47139 * 2 1
4 4 C 1.36933 * 120.00412 * 84.20892 * 3 2 1
5 5 H 1.08002 * 119.99938 * 214.52219 * 4 3 2
6 6 C 1.38808 * 119.99955 * 34.79365 * 4 3 2
7 7 N 1.31622 * 119.99839 * 214.57543 * 6 4 3
8 8 Si 1.86800 * 120.00032 * 34.57706 * 6 4 3
9 9 H 1.48509 * 109.46857 * 92.60319 * 8 6 4
10 10 H 1.48502 * 109.47289 * 212.60028 * 8 6 4
11 11 H 1.48490 * 109.47189 * 332.60351 * 8 6 4
12 12 C 1.46506 * 119.99699 * 264.20368 * 3 2 1
13 13 H 1.08994 * 109.47083 * 179.18566 * 12 3 2
14 14 C 1.53005 * 109.46611 * 59.19045 * 12 3 2
15 15 C 1.53001 * 109.47116 * 299.19351 * 12 3 2
16 16 N 1.46502 * 109.46805 * 301.37673 * 15 12 3
17 17 C 1.34784 * 119.99551 * 183.48305 * 16 15 12
18 18 O 1.21274 * 120.00169 * 5.08087 * 17 16 15
19 19 C 1.50698 * 119.99522 * 185.07610 * 17 16 15
20 20 O 1.42896 * 109.46945 * 182.76705 * 19 17 16
21 21 C 1.42902 * 114.00331 * 180.02562 * 20 19 17
22 22 C 1.53001 * 109.47300 * 180.02562 * 21 20 19
23 23 C 1.50698 * 109.46832 * 179.97438 * 22 21 20
24 24 C 1.38232 * 120.00357 * 269.72707 * 23 22 21
25 25 C 1.38232 * 119.99901 * 179.77075 * 24 23 22
26 26 C 1.38232 * 120.00296 * 0.50007 * 25 24 23
27 27 C 1.38232 * 120.00059 * 359.75332 * 26 25 24
28 28 C 1.38239 * 119.99735 * 359.97438 * 27 26 25
29 29 H 1.09005 * 109.46668 * 305.94666 * 1 2 3
30 30 H 1.08994 * 109.47015 * 65.94244 * 1 2 3
31 31 H 1.08996 * 109.47004 * 185.94700 * 1 2 3
32 32 H 1.08999 * 109.47291 * 239.99477 * 2 1 3
33 33 H 1.09003 * 109.47391 * 119.99487 * 2 1 3
34 34 H 0.96998 * 119.99897 * 179.97438 * 7 6 4
35 35 H 1.08994 * 109.47007 * 299.99569 * 14 12 3
36 36 H 1.08993 * 109.47285 * 60.00263 * 14 12 3
37 37 H 1.09005 * 109.46866 * 179.97438 * 14 12 3
38 38 H 1.08999 * 109.47260 * 61.37940 * 15 12 3
39 39 H 1.08999 * 109.46874 * 181.38134 * 15 12 3
40 40 H 0.96998 * 120.00021 * 3.48614 * 16 15 12
41 41 H 1.08997 * 109.47434 * 302.76950 * 19 17 16
42 42 H 1.09004 * 109.47349 * 62.77027 * 19 17 16
43 43 H 1.09002 * 109.46607 * 299.99986 * 21 20 19
44 44 H 1.08997 * 109.47410 * 59.99704 * 21 20 19
45 45 H 1.08993 * 109.47200 * 299.99753 * 22 21 20
46 46 H 1.09003 * 109.46811 * 59.99835 * 22 21 20
47 47 H 1.08001 * 120.00146 * 359.97438 * 24 23 22
48 48 H 1.08006 * 120.00129 * 180.22588 * 25 24 23
49 49 H 1.08000 * 120.00271 * 179.72299 * 26 25 24
50 50 H 1.08001 * 120.00830 * 179.97438 * 27 26 25
51 51 H 1.08004 * 119.99965 * 179.97438 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3813 0.0000
4 6 2.1338 2.0667 1.1798
5 1 1.9412 3.1291 1.2081
6 6 2.5038 1.3973 2.3381
7 7 2.0037 1.7648 3.4988
8 14 3.7114 -0.0251 2.2495
9 1 5.0905 0.4823 2.4648
10 1 3.3809 -1.0213 3.3001
11 1 3.6231 -0.6669 0.9134
12 6 2.3833 2.0291 -1.2623
13 1 2.7078 3.0509 -1.0658
14 6 1.1700 2.0498 -2.1943
15 6 3.5219 1.2507 -1.9246
16 7 4.6722 1.2028 -1.0185
17 6 5.8223 0.6256 -1.4196
18 8 5.9361 0.2287 -2.5599
19 6 6.9668 0.4737 -0.4511
20 8 8.0873 -0.1032 -1.1246
21 6 9.2326 -0.2916 -0.2910
22 6 10.3650 -0.9111 -1.1126
23 6 11.5729 -1.1092 -0.2336
24 6 12.5193 -0.1077 -0.1233
25 6 13.6249 -0.2877 0.6867
26 6 13.7894 -1.4731 1.3783
27 6 12.8457 -2.4767 1.2640
28 6 11.7372 -2.2946 0.4584
29 1 -0.3633 0.6033 0.8320
30 1 -0.3633 0.4189 -0.9384
31 1 -0.3633 -1.0221 0.1065
32 1 1.8934 -0.5139 -0.8899
33 1 1.8934 -0.5138 0.8900
34 1 2.2620 1.2967 4.3082
35 1 0.8455 1.0280 -2.3909
36 1 0.3589 2.6043 -1.7226
37 1 1.4414 2.5322 -3.1334
38 1 3.1892 0.2361 -2.1434
39 1 3.8100 1.7465 -2.8515
40 1 4.6061 1.5863 -0.1301
41 1 7.2431 1.4524 -0.0588
42 1 6.6636 -0.1749 0.3708
43 1 9.5560 0.6710 0.1049
44 1 8.9762 -0.9562 0.5340
45 1 10.0418 -1.8736 -1.5089
46 1 10.6213 -0.2460 -1.9373
47 1 12.3933 0.8167 -0.6675
48 1 14.3625 0.4963 0.7757
49 1 14.6555 -1.6154 2.0077
50 1 12.9744 -3.4031 1.8041
51 1 11.0001 -3.0789 0.3688
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001157287224.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:19:07
Heat of formation + Delta-G solvation = -54.448818 kcal
Electronic energy + Delta-G solvation = -28670.131661 eV
Core-core repulsion = 24762.575855 eV
Total energy + Delta-G solvation = -3907.555806 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.204 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-40.93207 -40.25915 -39.06271 -38.40619 -35.55761 -34.47217 -34.04278 -32.62442
-31.79806 -30.61603 -30.32543 -28.75991 -26.47268 -25.46268 -24.45406 -23.90304
-23.48977 -21.96786 -21.52367 -20.93110 -18.72640 -18.22619 -18.13744 -17.62819
-17.47355 -17.36926 -16.70056 -16.51078 -16.12261 -15.87013 -15.59781 -15.50640
-14.89562 -14.67810 -14.45643 -14.33905 -14.24446 -14.01188 -13.88720 -13.78860
-13.55261 -13.44039 -13.27308 -13.18334 -13.01585 -12.63659 -12.46165 -12.41378
-12.35069 -12.00367 -11.98163 -11.84529 -11.78026 -11.46574 -11.12415 -10.91178
-10.82161 -10.49174 -10.02821 -9.84674 -9.67705 -8.78110 -8.22233 -5.41884
0.37480 0.47420 1.31981 1.43643 1.48387 1.54087 1.82115 2.47911
2.76303 2.94873 3.02076 3.41890 3.69460 3.83900 3.91993 4.02479
4.04920 4.07509 4.15269 4.16394 4.23696 4.29036 4.32640 4.37988
4.40216 4.57403 4.58118 4.61978 4.74932 4.77329 4.81995 4.85332
4.88214 4.90320 5.01751 5.10521 5.14377 5.15680 5.25287 5.32322
5.40045 5.54094 5.55298 5.60641 5.62549 5.67985 5.92808 5.96478
6.09545 6.25802 6.50629 7.03134 7.14500 7.72003 8.16580 8.97847
Molecular weight = 334.20amu
Principal moments of inertia in cm(-1)
A = 0.015789 B = 0.002418 C = 0.002217
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1772.919144 B =11576.405498 C =12626.001530
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.137 3.863
3 N -0.599 5.599
4 C -0.257 4.257
5 H 0.046 0.954
6 C 0.002 3.998
7 N -0.926 5.926
8 Si 0.884 3.116
9 H -0.277 1.277
10 H -0.313 1.313
11 H -0.237 1.237
12 C 0.155 3.845
13 H 0.074 0.926
14 C -0.148 4.148
15 C 0.110 3.890
16 N -0.710 5.710
17 C 0.510 3.490
18 O -0.568 6.568
19 C 0.042 3.958
20 O -0.384 6.384
21 C 0.061 3.939
22 C -0.072 4.072
23 C -0.094 4.094
24 C -0.126 4.126
25 C -0.126 4.126
26 C -0.129 4.129
27 C -0.128 4.128
28 C -0.129 4.129
29 H 0.030 0.970
30 H 0.063 0.937
31 H 0.054 0.946
32 H 0.057 0.943
33 H 0.025 0.975
34 H 0.260 0.740
35 H 0.057 0.943
36 H 0.051 0.949
37 H 0.074 0.926
38 H 0.054 0.946
39 H 0.076 0.924
40 H 0.408 0.592
41 H 0.104 0.896
42 H 0.083 0.917
43 H 0.064 0.936
44 H 0.055 0.945
45 H 0.078 0.922
46 H 0.083 0.917
47 H 0.132 0.868
48 H 0.142 0.858
49 H 0.142 0.858
50 H 0.139 0.861
51 H 0.128 0.872
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.344 -4.857 -6.921 20.199
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C 0.013 3.987
3 N -0.322 5.322
4 C -0.386 4.386
5 H 0.063 0.937
6 C -0.197 4.197
7 N -0.568 5.568
8 Si 0.711 3.289
9 H -0.204 1.204
10 H -0.241 1.241
11 H -0.161 1.161
12 C 0.049 3.951
13 H 0.092 0.908
14 C -0.207 4.207
15 C -0.015 4.015
16 N -0.362 5.362
17 C 0.296 3.704
18 O -0.448 6.448
19 C -0.038 4.038
20 O -0.303 6.303
21 C -0.015 4.015
22 C -0.109 4.109
23 C -0.094 4.094
24 C -0.144 4.144
25 C -0.144 4.144
26 C -0.147 4.147
27 C -0.145 4.145
28 C -0.147 4.147
29 H 0.049 0.951
30 H 0.082 0.918
31 H 0.073 0.927
32 H 0.075 0.925
33 H 0.044 0.956
34 H 0.069 0.931
35 H 0.076 0.924
36 H 0.070 0.930
37 H 0.093 0.907
38 H 0.072 0.928
39 H 0.094 0.906
40 H 0.244 0.756
41 H 0.121 0.879
42 H 0.101 0.899
43 H 0.082 0.918
44 H 0.074 0.926
45 H 0.097 0.903
46 H 0.101 0.899
47 H 0.150 0.850
48 H 0.160 0.840
49 H 0.160 0.840
50 H 0.157 0.843
51 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges 18.392 -5.210 -7.767 20.633
hybrid contribution 0.235 -0.446 1.433 1.519
sum 18.627 -5.655 -6.334 20.471
Atomic orbital electron populations
1.22223 0.97786 1.00299 1.01349 1.21143 0.93350 0.85724 0.98530
1.44222 1.74167 1.11737 1.02110 1.18511 1.41067 0.93534 0.85480
0.93669 1.25812 0.99729 0.99455 0.94656 1.70179 1.42026 1.44747
0.99850 0.86910 0.82453 0.81150 0.78389 1.20390 1.24120 1.16106
1.20922 0.92378 0.95897 0.85939 0.90801 1.22101 0.97553 1.02093
0.98936 1.21985 0.85806 1.01006 0.92704 1.45951 1.11972 1.58758
1.19546 1.20554 0.83981 0.77515 0.88371 1.90646 1.82691 1.50524
1.20938 1.22283 0.86509 1.01062 0.93919 1.87928 1.21868 1.83200
1.37338 1.22704 0.84961 1.00551 0.93265 1.20381 0.90866 1.02450
0.97220 1.19768 0.96024 0.95064 0.98520 1.21328 0.94493 0.99034
0.99513 1.21469 0.97979 0.98322 0.96616 1.21515 0.99838 0.93649
0.99715 1.21453 0.94239 1.00143 0.98707 1.21322 0.98698 0.97378
0.97304 0.95081 0.91768 0.92679 0.92492 0.95644 0.93074 0.92376
0.92966 0.90683 0.92756 0.90609 0.75617 0.87869 0.89935 0.91766
0.92643 0.90341 0.89863 0.84982 0.84050 0.84015 0.84306 0.85444
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.65 9.96 71.98 0.72 -4.93 16
2 C 0.14 5.39 4.22 86.38 0.36 5.75 16
3 N -0.60 -24.44 1.60 -678.00 -1.08 -25.53 16
4 C -0.26 -12.82 9.44 84.03 0.79 -12.02 16
5 H 0.05 2.52 8.06 -2.91 -0.02 2.49 16
6 C 0.00 0.11 5.10 84.86 0.43 0.54 16
7 N -0.93 -53.84 13.97 21.65 0.30 -53.53 16
8 Si 0.88 40.12 24.97 68.60 1.71 41.83 16
9 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16
10 H -0.31 -15.18 7.11 99.48 0.71 -14.47 16
11 H -0.24 -10.09 5.68 99.48 0.57 -9.52 16
12 C 0.16 5.18 2.83 44.99 0.13 5.30 16
13 H 0.07 2.53 7.89 -2.39 -0.02 2.51 16
14 C -0.15 -4.09 8.32 71.98 0.60 -3.49 16
15 C 0.11 3.57 5.01 86.38 0.43 4.00 16
16 N -0.71 -24.46 5.41 -463.06 -2.51 -26.97 16
17 C 0.51 18.08 7.90 87.66 0.69 18.77 16
18 O -0.57 -23.75 16.50 16.01 0.26 -23.49 16
19 C 0.04 1.24 6.42 71.24 0.46 1.70 16
20 O -0.38 -11.65 9.88 -129.96 -1.28 -12.93 16
21 C 0.06 1.39 5.92 71.98 0.43 1.82 16
22 C -0.07 -1.44 5.72 29.85 0.17 -1.27 16
23 C -0.09 -1.75 5.13 -19.87 -0.10 -1.85 16
24 C -0.13 -2.11 9.70 22.27 0.22 -1.90 16
25 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16
26 C -0.13 -1.82 10.05 22.27 0.22 -1.59 16
27 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16
28 C -0.13 -2.28 9.70 22.27 0.22 -2.07 16
29 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16
30 H 0.06 2.03 6.20 -2.39 -0.01 2.01 16
31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16
32 H 0.06 2.02 6.51 -2.39 -0.02 2.01 16
33 H 0.03 1.11 3.83 -2.39 -0.01 1.10 16
34 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16
35 H 0.06 1.56 6.55 -2.39 -0.02 1.54 16
36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16
37 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16
38 H 0.05 1.83 6.75 -2.39 -0.02 1.82 16
39 H 0.08 2.28 8.13 -2.39 -0.02 2.26 16
40 H 0.41 14.53 6.57 -92.71 -0.61 13.92 16
41 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16
42 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16
43 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16
44 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16
45 H 0.08 1.61 8.09 -2.39 -0.02 1.59 16
46 H 0.08 1.64 8.08 -2.39 -0.02 1.62 16
47 H 0.13 1.87 8.06 -2.91 -0.02 1.85 16
48 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16
49 H 0.14 1.31 8.06 -2.91 -0.02 1.28 16
50 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16
51 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16
Total: -1.00 -65.91 408.12 3.78 -62.14
By element:
Atomic # 1 Polarization: 32.90 SS G_CDS: 0.16 Total: 33.05 kcal
Atomic # 6 Polarization: -0.79 SS G_CDS: 6.21 Total: 5.42 kcal
Atomic # 7 Polarization: -102.74 SS G_CDS: -3.29 Total: -106.03 kcal
Atomic # 8 Polarization: -35.40 SS G_CDS: -1.02 Total: -36.42 kcal
Atomic # 14 Polarization: 40.12 SS G_CDS: 1.71 Total: 41.83 kcal
Total: -65.91 3.78 -62.14 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001157287224.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.688 kcal
(2) G-P(sol) polarization free energy of solvation -65.914 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.226 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.777 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.137 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.449 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds