Wall clock time and date at job start Tue Mar 31 2020 17:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00014 * 2 1 4 4 C 1.53006 * 109.46809 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.46814 * 54.29398 * 4 3 2 6 6 C 1.52994 * 109.47262 * 294.28620 * 4 3 2 7 7 C 1.50704 * 109.46773 * 174.28762 * 4 3 2 8 8 O 1.21279 * 119.99903 * 107.00933 * 7 4 3 9 9 N 1.34771 * 120.00005 * 287.01314 * 7 4 3 10 10 C 1.46498 * 120.00518 * 4.97047 * 9 7 4 11 11 C 1.52999 * 109.47534 * 264.37544 * 10 9 7 12 12 N 1.46495 * 109.47172 * 179.97438 * 11 10 9 13 13 C 1.36936 * 119.99899 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99889 * 0.02562 * 13 12 11 15 15 C 1.38814 * 120.00247 * 180.02562 * 13 12 11 16 16 N 1.31619 * 119.99531 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00253 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47372 * 60.00188 * 17 15 13 19 19 H 1.48503 * 109.47411 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47317 * 299.99860 * 17 15 13 21 21 C 1.46504 * 119.99982 * 184.69790 * 9 7 4 22 22 C 1.52996 * 109.47479 * 270.27686 * 21 9 7 23 23 C 1.50697 * 109.47526 * 179.97438 * 22 21 9 24 24 C 1.38233 * 119.99868 * 269.72760 * 23 22 21 25 25 C 1.38232 * 120.00104 * 179.76197 * 24 23 22 26 26 C 1.38237 * 119.99583 * 0.50866 * 25 24 23 27 27 C 1.38229 * 120.00345 * 359.74208 * 26 25 24 28 28 C 1.38231 * 119.99863 * 0.02562 * 27 26 25 29 29 H 1.09004 * 109.46677 * 60.00035 * 1 2 3 30 30 H 1.08995 * 109.46974 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46841 * 300.00813 * 1 2 3 32 32 H 1.08994 * 109.47239 * 59.99925 * 3 2 1 33 33 H 1.08998 * 109.46685 * 299.99530 * 3 2 1 34 34 H 1.09002 * 109.47463 * 300.00776 * 6 4 3 35 35 H 1.09002 * 109.46952 * 60.00389 * 6 4 3 36 36 H 1.08997 * 109.46963 * 179.97438 * 6 4 3 37 37 H 1.09006 * 109.46903 * 24.37327 * 10 9 7 38 38 H 1.08997 * 109.47482 * 144.36631 * 10 9 7 39 39 H 1.09003 * 109.46360 * 299.99795 * 11 10 9 40 40 H 1.09002 * 109.46835 * 59.99357 * 11 10 9 41 41 H 0.96994 * 120.00332 * 359.97438 * 12 11 10 42 42 H 0.97006 * 119.99681 * 180.02562 * 16 15 13 43 43 H 1.09004 * 109.46567 * 30.27556 * 21 9 7 44 44 H 1.09005 * 109.47045 * 150.27024 * 21 9 7 45 45 H 1.09001 * 109.46940 * 300.00044 * 22 21 9 46 46 H 1.08998 * 109.47136 * 59.99677 * 22 21 9 47 47 H 1.08000 * 119.99847 * 359.97438 * 24 23 22 48 48 H 1.08004 * 120.00209 * 180.22472 * 25 24 23 49 49 H 1.08010 * 119.99639 * 179.72283 * 26 25 24 50 50 H 1.08002 * 120.00363 * 179.97438 * 27 26 25 51 51 H 1.08001 * 120.00069 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8506 0.5578 -0.8336 6 6 3.9966 0.5531 1.3157 7 6 4.1480 2.5543 -0.1408 8 8 4.6827 3.0808 0.8120 9 7 4.1015 3.1941 -1.3260 10 6 3.3622 2.6077 -2.4466 11 6 4.3258 1.8217 -3.3380 12 7 3.5863 1.2349 -4.4582 13 6 4.2447 0.4829 -5.3942 14 1 5.3090 0.3220 -5.3063 15 6 3.5441 -0.0728 -6.4560 16 7 2.2471 0.1236 -6.5633 17 14 4.4421 -1.0992 -7.7324 18 1 5.0768 -2.2675 -7.0709 19 1 3.4754 -1.5747 -8.7546 20 1 5.4878 -0.2722 -8.3863 21 6 4.7854 4.4790 -1.4921 22 6 3.8306 5.6164 -1.1238 23 6 4.5342 6.9381 -1.2941 24 6 5.2270 7.4938 -0.2347 25 6 5.8765 8.7037 -0.3923 26 6 5.8245 9.3631 -1.6061 27 6 5.1275 8.8100 -2.6639 28 6 4.4820 7.5977 -2.5078 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 1.6887 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.6813 1.1799 2.1500 35 1 3.5536 -0.4376 1.4180 36 1 5.0831 0.4666 1.3159 37 1 2.5930 1.9371 -2.0632 38 1 2.8945 3.4018 -3.0286 39 1 5.0949 2.4924 -3.7213 40 1 4.7934 1.0276 -2.7558 41 1 2.6304 1.3790 -4.5369 42 1 1.7575 -0.2650 -7.3050 43 1 5.6588 4.5126 -0.8408 44 1 5.1012 4.5912 -2.5294 45 1 2.9572 5.5828 -1.7751 46 1 3.5149 5.5042 -0.0866 47 1 5.2635 6.9809 0.7150 48 1 6.4208 9.1362 0.4343 49 1 6.3284 10.3107 -1.7279 50 1 5.0866 9.3253 -3.6122 51 1 3.9370 7.1657 -3.3341 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162738277.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:24 Heat of formation + Delta-G solvation = -65.051446 kcal Electronic energy + Delta-G solvation = -29177.436021 eV Core-core repulsion = 25269.420450 eV Total energy + Delta-G solvation = -3908.015571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.54252 -40.11654 -38.84302 -37.75949 -36.24509 -34.98980 -33.94899 -33.02449 -31.75498 -30.11065 -28.91613 -28.31916 -26.83148 -25.73994 -25.24442 -23.70434 -23.44573 -22.68577 -21.79979 -20.12485 -19.15603 -18.47631 -17.77413 -17.54283 -17.24647 -16.87794 -16.57726 -16.34969 -16.10430 -15.98015 -15.55078 -15.32282 -15.20544 -15.00508 -14.69767 -14.44887 -14.29218 -14.13344 -13.97211 -13.69529 -13.48886 -13.19087 -13.03897 -12.95542 -12.81536 -12.73991 -12.52569 -12.45306 -12.18655 -12.16104 -12.12501 -11.93933 -11.86914 -11.81280 -11.70316 -10.96111 -10.89904 -10.56154 -9.99294 -9.80886 -9.48218 -9.01753 -7.94712 -5.23911 0.43389 0.51339 1.40329 1.49454 1.51399 1.57323 1.81899 2.57205 2.77038 2.89798 3.39146 3.48564 3.73992 3.78820 3.87724 3.90796 3.98370 4.09269 4.13939 4.18328 4.22529 4.26316 4.31989 4.35095 4.41701 4.45826 4.53198 4.56783 4.60736 4.61157 4.66012 4.69997 4.88030 4.88714 4.90739 4.92757 5.00767 5.05696 5.11796 5.19316 5.19819 5.24607 5.45637 5.51167 5.60155 5.64137 5.73491 6.13934 6.15558 6.22674 6.28279 7.01342 7.34713 8.05623 8.31103 9.27839 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.007258 B = 0.003521 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3856.927469 B = 7949.327602 C =10813.692653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.071 3.929 4 C -0.114 4.114 5 H 0.097 0.903 6 C -0.120 4.120 7 C 0.527 3.473 8 O -0.561 6.561 9 N -0.599 5.599 10 C 0.101 3.899 11 C 0.143 3.857 12 N -0.738 5.738 13 C -0.248 4.248 14 H 0.071 0.929 15 C -0.066 4.066 16 N -0.963 5.963 17 Si 0.969 3.031 18 H -0.280 1.280 19 H -0.294 1.294 20 H -0.279 1.279 21 C 0.123 3.877 22 C -0.083 4.083 23 C -0.090 4.090 24 C -0.128 4.128 25 C -0.126 4.126 26 C -0.130 4.130 27 C -0.127 4.127 28 C -0.127 4.127 29 H 0.045 0.955 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.021 0.979 40 H 0.015 0.985 41 H 0.378 0.622 42 H 0.253 0.747 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.067 0.933 47 H 0.121 0.879 48 H 0.139 0.861 49 H 0.142 0.858 50 H 0.139 0.861 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.350 13.682 14.711 20.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C -0.006 4.006 4 C -0.135 4.135 5 H 0.115 0.885 6 C -0.178 4.178 7 C 0.315 3.685 8 O -0.440 6.440 9 N -0.330 5.330 10 C -0.022 4.022 11 C 0.015 3.985 12 N -0.382 5.382 13 C -0.380 4.380 14 H 0.089 0.911 15 C -0.259 4.259 16 N -0.613 5.613 17 Si 0.798 3.202 18 H -0.206 1.206 19 H -0.220 1.220 20 H -0.205 1.205 21 C 0.001 3.999 22 C -0.122 4.122 23 C -0.091 4.091 24 C -0.146 4.146 25 C -0.144 4.144 26 C -0.148 4.148 27 C -0.145 4.145 28 C -0.145 4.145 29 H 0.063 0.937 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.039 0.961 40 H 0.033 0.967 41 H 0.210 0.790 42 H 0.061 0.939 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.099 0.901 46 H 0.086 0.914 47 H 0.139 0.861 48 H 0.157 0.843 49 H 0.160 0.840 50 H 0.157 0.843 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.893 13.716 15.137 20.446 hybrid contribution -0.100 -0.492 -1.039 1.154 sum 0.794 13.225 14.097 19.346 Atomic orbital electron populations 1.22946 0.79259 1.03987 1.00894 1.87859 1.21546 1.27393 1.95556 1.22552 0.90970 0.85553 1.01488 1.21321 0.95736 0.93792 1.02632 0.88464 1.21496 1.01085 1.00861 0.94339 1.20611 0.79052 0.86820 0.81974 1.90647 1.46284 1.68289 1.38742 1.47935 1.52492 1.21450 1.11131 1.21984 0.94240 0.98622 0.87357 1.21033 0.94401 0.94589 0.88471 1.42291 1.08023 1.61197 1.26644 1.19488 0.92869 1.23303 1.02332 0.91099 1.25471 0.96495 1.02835 1.01123 1.69777 1.07402 1.50658 1.33467 0.85292 0.77310 0.78828 0.78800 1.20639 1.21969 1.20480 1.21480 0.95022 0.80972 1.02409 1.20815 0.98116 0.90679 1.02564 1.19831 0.98830 0.96039 0.94356 1.21256 0.98016 0.96530 0.98828 1.21428 0.99375 0.95119 0.98486 1.21479 0.99382 1.00824 0.93090 1.21451 0.97364 0.95739 0.99908 1.21302 1.00308 0.95895 0.97040 0.93662 0.88484 0.92442 0.91686 0.91749 0.91969 0.90703 0.92718 0.88437 0.88810 0.96129 0.96664 0.78959 0.93869 0.90897 0.89731 0.90072 0.91397 0.86062 0.84305 0.83983 0.84325 0.85370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 113.37 1.25 1.75 16 2 O -0.40 -10.70 10.27 -148.98 -1.53 -12.23 16 3 C 0.07 1.73 4.91 71.98 0.35 2.09 16 4 C -0.11 -3.07 2.14 -11.54 -0.02 -3.10 16 5 H 0.10 2.93 6.93 -2.39 -0.02 2.91 16 6 C -0.12 -3.02 8.48 71.98 0.61 -2.41 16 7 C 0.53 15.33 6.93 87.66 0.61 15.94 16 8 O -0.56 -18.73 15.62 -3.03 -0.05 -18.77 16 9 N -0.60 -16.22 2.47 -821.80 -2.03 -18.25 16 10 C 0.10 2.92 5.02 86.38 0.43 3.35 16 11 C 0.14 5.40 6.53 86.38 0.56 5.97 16 12 N -0.74 -35.55 5.60 -343.46 -1.92 -37.47 16 13 C -0.25 -13.50 9.99 84.03 0.84 -12.66 16 14 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 15 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 16 N -0.96 -56.70 13.06 21.65 0.28 -56.42 16 17 Si 0.97 45.16 29.55 68.60 2.03 47.19 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 C 0.12 3.08 5.37 86.38 0.46 3.55 16 22 C -0.08 -1.84 5.67 29.85 0.17 -1.67 16 23 C -0.09 -1.95 5.13 -19.87 -0.10 -2.05 16 24 C -0.13 -2.68 9.70 22.27 0.22 -2.46 16 25 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 26 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 27 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 28 C -0.13 -2.60 9.70 22.27 0.22 -2.38 16 29 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 1.54 5.40 -2.39 -0.01 1.53 16 34 H 0.06 1.53 7.96 -2.39 -0.02 1.51 16 35 H 0.07 1.77 7.84 -2.39 -0.02 1.76 16 36 H 0.05 1.39 8.14 -2.39 -0.02 1.38 16 37 H 0.10 2.78 4.01 -2.38 -0.01 2.77 16 38 H 0.09 2.52 8.11 -2.39 -0.02 2.50 16 39 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.02 0.61 7.39 -2.39 -0.02 0.59 16 41 H 0.38 18.94 7.67 -92.71 -0.71 18.22 16 42 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 43 H 0.07 1.99 7.50 -2.39 -0.02 1.97 16 44 H 0.08 2.07 8.07 -2.38 -0.02 2.05 16 45 H 0.08 1.67 8.09 -2.39 -0.02 1.65 16 46 H 0.07 1.61 8.08 -2.39 -0.02 1.59 16 47 H 0.12 2.47 8.06 -2.91 -0.02 2.44 16 48 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 49 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 50 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 51 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -66.25 416.43 3.70 -62.55 By element: Atomic # 1 Polarization: 36.57 SS G_CDS: 0.19 Total: 36.76 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 6.73 Total: -3.36 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -3.67 Total: -112.14 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -1.58 Total: -31.00 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -66.25 3.70 -62.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162738277.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.500 kcal (2) G-P(sol) polarization free energy of solvation -66.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds