Wall clock time and date at job start Tue Mar 31 2020 19:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42892 * 109.47206 * 2 1 4 4 C 1.35913 * 116.99935 * 180.02562 * 3 2 1 5 5 C 1.38849 * 119.98378 * 0.02562 * 4 3 2 6 6 C 1.38248 * 120.23987 * 179.97438 * 5 4 3 7 7 C 1.38012 * 120.20424 * 359.68001 * 6 5 4 8 8 C 1.39562 * 119.96369 * 0.59795 * 7 6 5 9 9 C 1.47856 * 120.11953 * 179.69916 * 8 7 6 10 10 O 1.21543 * 120.00345 * 179.72422 * 9 8 7 11 11 N 1.34781 * 119.99785 * 359.72309 * 9 8 7 12 12 C 1.46501 * 120.00231 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.46643 * 324.99984 * 12 11 9 14 14 C 1.53002 * 109.47013 * 84.99743 * 12 11 9 15 15 C 1.52996 * 109.47049 * 204.99988 * 12 11 9 16 16 C 1.52997 * 109.47131 * 65.00110 * 15 12 11 17 17 C 1.53006 * 109.47127 * 179.97438 * 16 15 12 18 18 C 1.52997 * 109.47127 * 180.02562 * 17 16 15 19 19 N 1.46496 * 109.47294 * 179.97438 * 18 17 16 20 20 C 1.36935 * 120.00627 * 179.97438 * 19 18 17 21 21 H 1.08012 * 119.99691 * 359.97438 * 20 19 18 22 22 C 1.38805 * 120.00809 * 180.02562 * 20 19 18 23 23 N 1.31623 * 119.99595 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00541 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47105 * 59.99692 * 24 22 20 26 26 H 1.48496 * 109.47068 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46941 * 299.99925 * 24 22 20 28 28 C 1.38455 * 119.98534 * 179.97438 * 4 3 2 29 29 H 1.09001 * 109.47200 * 59.99480 * 1 2 3 30 30 H 1.08998 * 109.47443 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46748 * 299.99938 * 1 2 3 32 32 H 1.09001 * 109.46748 * 240.00062 * 2 1 3 33 33 H 1.09001 * 109.46686 * 120.00406 * 2 1 3 34 34 H 1.08000 * 119.87926 * 359.97438 * 5 4 3 35 35 H 1.07995 * 119.89654 * 179.97438 * 6 5 4 36 36 H 1.07998 * 120.01331 * 180.29512 * 7 6 5 37 37 H 0.97003 * 120.00102 * 359.97438 * 11 9 8 38 38 H 1.09001 * 109.46843 * 60.00279 * 14 12 11 39 39 H 1.08998 * 109.46646 * 179.97438 * 14 12 11 40 40 H 1.08992 * 109.47133 * 300.00613 * 14 12 11 41 41 H 1.08996 * 109.47452 * 305.00111 * 15 12 11 42 42 H 1.09001 * 109.46997 * 184.99684 * 15 12 11 43 43 H 1.09001 * 109.47502 * 60.00153 * 16 15 12 44 44 H 1.09001 * 109.47289 * 299.99950 * 16 15 12 45 45 H 1.09001 * 109.47002 * 299.99574 * 17 16 15 46 46 H 1.08993 * 109.46955 * 60.00011 * 17 16 15 47 47 H 1.09001 * 109.47289 * 299.99953 * 18 17 16 48 48 H 1.09004 * 109.47261 * 59.99697 * 18 17 16 49 49 H 0.97006 * 119.99755 * 359.97438 * 19 18 17 50 50 H 0.97000 * 120.00324 * 180.02562 * 23 22 20 51 51 H 1.08003 * 120.10258 * 0.04308 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3538 1.5252 -0.0005 5 6 4.1992 0.4238 -0.0016 6 6 5.5706 0.5988 -0.0027 7 6 6.1084 1.8698 -0.0094 8 6 5.2665 2.9829 -0.0025 9 6 5.8390 4.3462 -0.0029 10 8 5.1039 5.3141 -0.0019 11 7 7.1761 4.5155 -0.0044 12 6 7.7434 5.8662 -0.0042 13 1 7.1073 6.5275 -0.5925 14 6 7.8266 6.3843 1.4330 15 6 9.1455 5.8305 -0.6155 16 6 9.0493 5.4321 -2.0895 17 6 10.4514 5.3970 -2.7010 18 6 10.3551 4.9992 -4.1752 19 7 11.6975 4.9662 -4.7608 20 6 11.8617 4.6327 -6.0787 21 1 11.0014 4.3935 -6.6865 22 6 13.1336 4.6008 -6.6335 23 7 14.1821 4.8918 -5.8928 24 14 13.3574 4.1466 -8.4316 25 1 12.6192 5.1143 -9.2822 26 1 14.8013 4.1863 -8.7761 27 1 12.8296 2.7784 -8.6658 28 6 3.8827 2.8048 -0.0011 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.7840 -0.5732 -0.0016 35 1 6.2231 -0.2618 -0.0031 36 1 7.1801 2.0029 -0.0150 37 1 7.7629 3.7431 -0.0047 38 1 8.4627 5.7230 2.0213 39 1 8.2491 7.3890 1.4331 40 1 6.8278 6.4096 1.8685 41 1 9.7563 5.1025 -0.0815 42 1 9.6023 6.8169 -0.5348 43 1 8.4386 6.1601 -2.6236 44 1 8.5925 4.4457 -2.1702 45 1 10.9077 6.3836 -2.6204 46 1 11.0624 4.6693 -2.1671 47 1 9.8986 4.0127 -4.2563 48 1 9.7441 5.7273 -4.7088 49 1 12.4702 5.1806 -4.2149 50 1 15.0710 4.8699 -6.2805 51 1 3.2261 3.6623 -0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175470017.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:37 Heat of formation + Delta-G solvation = -62.208091 kcal Electronic energy + Delta-G solvation = -27507.617257 eV Core-core repulsion = 23599.724983 eV Total energy + Delta-G solvation = -3907.892274 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.82647 -39.83915 -37.72576 -36.85704 -35.25580 -33.32532 -32.51005 -32.03293 -31.07124 -30.30623 -29.58208 -27.43328 -25.17554 -24.21469 -23.28671 -22.81041 -22.04181 -20.94910 -20.69026 -20.55973 -18.98242 -17.02185 -16.99175 -16.72217 -16.57149 -16.28198 -15.85613 -15.20394 -15.04252 -14.69558 -14.44253 -14.04926 -13.98258 -13.82359 -13.72105 -13.49197 -13.14610 -13.08347 -12.93387 -12.91537 -12.50757 -12.37444 -12.30610 -12.08497 -11.74909 -11.45014 -11.33425 -11.25158 -11.21607 -10.98012 -10.78149 -10.69036 -10.42464 -10.28962 -10.12251 -9.98847 -9.64644 -9.45964 -9.19903 -8.83437 -8.65736 -6.88250 -5.73473 -3.01782 0.46708 1.01730 2.60308 2.61203 3.05393 3.46003 3.49891 3.51332 3.53017 4.29380 4.32587 4.42045 4.52162 4.57009 4.60067 4.65260 4.72517 4.76158 4.88966 4.93632 4.99781 5.08113 5.19983 5.27520 5.29327 5.41824 5.46868 5.54182 5.54632 5.56799 5.62853 5.71006 5.78496 5.82858 5.90804 5.94134 5.95954 5.97898 6.12081 6.19248 6.24891 6.32711 6.39916 6.40854 6.49035 6.92120 6.95970 6.96994 7.29902 7.72364 8.00714 8.45989 9.56568 10.16010 10.50668 11.49544 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011032 B = 0.001930 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.520260 B =14502.161933 C =16379.342637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.053 3.947 3 O -0.314 6.314 4 C 0.122 3.878 5 C -0.186 4.186 6 C -0.085 4.085 7 C -0.123 4.123 8 C -0.094 4.094 9 C 0.560 3.440 10 O -0.535 6.535 11 N -0.715 5.715 12 C 0.140 3.860 13 H 0.091 0.909 14 C -0.163 4.163 15 C -0.127 4.127 16 C -0.115 4.115 17 C -0.125 4.125 18 C 0.152 3.848 19 N -0.735 5.735 20 C -0.239 4.239 21 H 0.069 0.931 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.908 3.092 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.094 4.094 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.400 0.600 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.016 0.984 48 H 0.016 0.984 49 H 0.383 0.617 50 H 0.255 0.745 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.373 -9.361 19.783 32.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.228 6.228 4 C 0.077 3.923 5 C -0.205 4.205 6 C -0.103 4.103 7 C -0.142 4.142 8 C -0.097 4.097 9 C 0.347 3.653 10 O -0.412 6.412 11 N -0.367 5.367 12 C 0.036 3.964 13 H 0.109 0.891 14 C -0.221 4.221 15 C -0.165 4.165 16 C -0.153 4.153 17 C -0.163 4.163 18 C 0.024 3.976 19 N -0.379 5.379 20 C -0.370 4.370 21 H 0.087 0.913 22 C -0.211 4.211 23 N -0.584 5.584 24 Si 0.739 3.261 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.113 4.113 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.236 0.764 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.034 0.966 48 H 0.034 0.966 49 H 0.216 0.784 50 H 0.065 0.935 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -24.070 -8.545 19.605 32.199 hybrid contribution 0.885 -0.923 -0.877 1.551 sum -23.185 -9.468 18.728 31.272 Atomic orbital electron populations 1.21783 0.92541 1.02956 1.03725 1.22823 0.96106 0.81777 1.01466 1.86104 1.18606 1.29479 1.88617 1.18818 0.82656 0.93716 0.97116 1.21451 0.94481 0.98228 1.06352 1.20911 0.94345 0.97311 0.97737 1.21246 0.99693 0.91978 1.01256 1.19717 0.93316 0.93199 1.03486 1.18159 0.82421 0.88416 0.76305 1.90776 1.59578 1.41336 1.49529 1.46024 1.06320 1.09589 1.74811 1.21091 0.95177 0.83230 0.96859 0.89134 1.22179 1.02316 1.01407 0.96247 1.21945 0.94791 1.03177 0.96579 1.21531 0.97929 1.01652 0.94191 1.21724 0.95811 1.01721 0.97059 1.20651 0.88953 0.97209 0.90743 1.42378 1.02341 1.83443 1.09698 1.19218 0.92463 1.38351 0.87015 0.91292 1.24743 0.95516 1.02731 0.98154 1.69654 0.97771 1.55681 1.35285 0.86253 0.76636 0.78260 0.84969 1.21284 1.21672 1.21296 1.20462 0.94065 0.95537 1.01239 0.91353 0.90264 0.91434 0.91855 0.91945 0.85082 0.84901 0.85233 0.76365 0.92453 0.91402 0.92215 0.91316 0.90068 0.91920 0.92130 0.92038 0.92138 0.96635 0.96569 0.78357 0.93519 0.83838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 10.28 37.16 0.38 -0.28 16 2 C 0.05 0.30 5.46 37.16 0.20 0.51 16 3 O -0.31 -2.91 10.13 -19.47 -0.20 -3.11 16 4 C 0.12 1.18 6.68 -39.28 -0.26 0.92 16 5 C -0.19 -1.44 9.03 -39.35 -0.36 -1.79 16 6 C -0.08 -0.62 10.03 -39.66 -0.40 -1.02 16 7 C -0.12 -1.01 9.54 -39.17 -0.37 -1.39 16 8 C -0.09 -0.99 5.87 -104.99 -0.62 -1.61 16 9 C 0.56 6.72 7.74 -12.32 -0.10 6.62 16 10 O -0.53 -8.21 16.01 5.33 0.09 -8.13 16 11 N -0.72 -6.94 4.48 -54.75 -0.25 -7.19 16 12 C 0.14 1.40 2.57 -67.93 -0.17 1.22 16 13 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 14 C -0.16 -1.46 9.48 37.16 0.35 -1.11 16 15 C -0.13 -1.24 4.75 -26.73 -0.13 -1.37 16 16 C -0.11 -1.43 5.10 -26.73 -0.14 -1.56 16 17 C -0.13 -1.99 5.33 -26.73 -0.14 -2.13 16 18 C 0.15 3.16 6.26 -4.05 -0.03 3.13 16 19 N -0.73 -19.28 5.60 -59.91 -0.34 -19.62 16 20 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 21 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 22 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 23 N -0.94 -28.74 13.06 55.49 0.72 -28.02 16 24 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 C -0.09 -1.03 9.53 -39.02 -0.37 -1.40 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.30 7.65 -51.93 -0.40 -0.09 16 33 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 34 H 0.13 0.70 6.28 -52.49 -0.33 0.37 16 35 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.13 0.79 6.40 -52.49 -0.34 0.46 16 37 H 0.40 3.04 6.63 -40.82 -0.27 2.76 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.73 7.75 -51.93 -0.40 0.33 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 49 H 0.38 10.46 7.67 -40.82 -0.31 10.14 16 50 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 51 H 0.14 1.68 7.65 -52.48 -0.40 1.28 16 LS Contribution 418.62 15.07 6.31 6.31 Total: -1.00 -34.74 418.62 -9.78 -44.51 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -8.71 Total: 6.36 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -2.39 Total: -8.88 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.14 Total: -54.82 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -0.11 Total: -11.24 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -34.74 -9.78 -44.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175470017.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.694 kcal (2) G-P(sol) polarization free energy of solvation -34.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds