Wall clock time and date at job start Tue Mar 31 2020 19:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42892 * 109.47206 * 2 1 4 4 C 1.35913 * 116.99935 * 180.02562 * 3 2 1 5 5 C 1.38849 * 119.98378 * 0.02562 * 4 3 2 6 6 C 1.38248 * 120.23987 * 179.97438 * 5 4 3 7 7 C 1.38012 * 120.20424 * 359.68001 * 6 5 4 8 8 C 1.39562 * 119.96369 * 0.59795 * 7 6 5 9 9 C 1.47856 * 120.11953 * 179.69916 * 8 7 6 10 10 O 1.21543 * 120.00345 * 179.72422 * 9 8 7 11 11 N 1.34781 * 119.99785 * 359.72309 * 9 8 7 12 12 C 1.46501 * 120.00231 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.46643 * 324.99984 * 12 11 9 14 14 C 1.53002 * 109.47013 * 84.99743 * 12 11 9 15 15 C 1.52996 * 109.47049 * 204.99988 * 12 11 9 16 16 C 1.52997 * 109.47131 * 65.00110 * 15 12 11 17 17 C 1.53006 * 109.47127 * 179.97438 * 16 15 12 18 18 C 1.52997 * 109.47127 * 180.02562 * 17 16 15 19 19 N 1.46496 * 109.47294 * 179.97438 * 18 17 16 20 20 C 1.36935 * 120.00627 * 179.97438 * 19 18 17 21 21 H 1.08012 * 119.99691 * 359.97438 * 20 19 18 22 22 C 1.38805 * 120.00809 * 180.02562 * 20 19 18 23 23 N 1.31623 * 119.99595 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00541 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47105 * 59.99692 * 24 22 20 26 26 H 1.48496 * 109.47068 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46941 * 299.99925 * 24 22 20 28 28 C 1.38455 * 119.98534 * 179.97438 * 4 3 2 29 29 H 1.09001 * 109.47200 * 59.99480 * 1 2 3 30 30 H 1.08998 * 109.47443 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46748 * 299.99938 * 1 2 3 32 32 H 1.09001 * 109.46748 * 240.00062 * 2 1 3 33 33 H 1.09001 * 109.46686 * 120.00406 * 2 1 3 34 34 H 1.08000 * 119.87926 * 359.97438 * 5 4 3 35 35 H 1.07995 * 119.89654 * 179.97438 * 6 5 4 36 36 H 1.07998 * 120.01331 * 180.29512 * 7 6 5 37 37 H 0.97003 * 120.00102 * 359.97438 * 11 9 8 38 38 H 1.09001 * 109.46843 * 60.00279 * 14 12 11 39 39 H 1.08998 * 109.46646 * 179.97438 * 14 12 11 40 40 H 1.08992 * 109.47133 * 300.00613 * 14 12 11 41 41 H 1.08996 * 109.47452 * 305.00111 * 15 12 11 42 42 H 1.09001 * 109.46997 * 184.99684 * 15 12 11 43 43 H 1.09001 * 109.47502 * 60.00153 * 16 15 12 44 44 H 1.09001 * 109.47289 * 299.99950 * 16 15 12 45 45 H 1.09001 * 109.47002 * 299.99574 * 17 16 15 46 46 H 1.08993 * 109.46955 * 60.00011 * 17 16 15 47 47 H 1.09001 * 109.47289 * 299.99953 * 18 17 16 48 48 H 1.09004 * 109.47261 * 59.99697 * 18 17 16 49 49 H 0.97006 * 119.99755 * 359.97438 * 19 18 17 50 50 H 0.97000 * 120.00324 * 180.02562 * 23 22 20 51 51 H 1.08003 * 120.10258 * 0.04308 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3538 1.5252 -0.0005 5 6 4.1992 0.4238 -0.0016 6 6 5.5706 0.5988 -0.0027 7 6 6.1084 1.8698 -0.0094 8 6 5.2665 2.9829 -0.0025 9 6 5.8390 4.3462 -0.0029 10 8 5.1039 5.3141 -0.0019 11 7 7.1761 4.5155 -0.0044 12 6 7.7434 5.8662 -0.0042 13 1 7.1073 6.5275 -0.5925 14 6 7.8266 6.3843 1.4330 15 6 9.1455 5.8305 -0.6155 16 6 9.0493 5.4321 -2.0895 17 6 10.4514 5.3970 -2.7010 18 6 10.3551 4.9992 -4.1752 19 7 11.6975 4.9662 -4.7608 20 6 11.8617 4.6327 -6.0787 21 1 11.0014 4.3935 -6.6865 22 6 13.1336 4.6008 -6.6335 23 7 14.1821 4.8918 -5.8928 24 14 13.3574 4.1466 -8.4316 25 1 12.6192 5.1143 -9.2822 26 1 14.8013 4.1863 -8.7761 27 1 12.8296 2.7784 -8.6658 28 6 3.8827 2.8048 -0.0011 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.7840 -0.5732 -0.0016 35 1 6.2231 -0.2618 -0.0031 36 1 7.1801 2.0029 -0.0150 37 1 7.7629 3.7431 -0.0047 38 1 8.4627 5.7230 2.0213 39 1 8.2491 7.3890 1.4331 40 1 6.8278 6.4096 1.8685 41 1 9.7563 5.1025 -0.0815 42 1 9.6023 6.8169 -0.5348 43 1 8.4386 6.1601 -2.6236 44 1 8.5925 4.4457 -2.1702 45 1 10.9077 6.3836 -2.6204 46 1 11.0624 4.6693 -2.1671 47 1 9.8986 4.0127 -4.2563 48 1 9.7441 5.7273 -4.7088 49 1 12.4702 5.1806 -4.2149 50 1 15.0710 4.8699 -6.2805 51 1 3.2261 3.6623 -0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175470017.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:36 Heat of formation + Delta-G solvation = -83.669918 kcal Electronic energy + Delta-G solvation = -27508.547911 eV Core-core repulsion = 23599.724983 eV Total energy + Delta-G solvation = -3908.822928 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.56486 -40.60889 -38.43707 -37.88724 -36.83104 -34.81285 -33.31065 -32.87673 -32.28438 -31.39113 -30.27680 -28.81141 -26.06957 -25.64312 -24.11393 -23.46171 -23.38120 -22.04220 -21.77882 -21.39062 -19.68618 -19.11353 -17.78760 -17.46598 -17.08840 -16.97695 -16.68537 -16.58478 -16.24244 -16.02958 -15.43459 -15.27462 -15.23386 -14.75898 -14.59249 -14.39900 -14.33583 -14.15147 -14.03095 -13.41958 -13.26500 -13.07951 -13.02188 -12.91904 -12.87737 -12.83446 -12.62204 -12.44136 -12.27348 -12.19542 -11.91926 -11.87666 -11.81087 -11.68143 -11.48715 -11.39624 -11.05027 -10.92762 -10.25713 -9.98465 -9.30854 -9.00994 -7.96099 -5.25358 -0.25337 0.35938 1.46610 1.50042 1.56368 1.79622 1.94590 2.36178 2.55645 2.80287 3.36909 3.55615 3.66908 3.75908 4.00740 4.02178 4.05393 4.05710 4.10291 4.13345 4.16985 4.31161 4.35961 4.36318 4.41970 4.47828 4.61365 4.65817 4.77460 4.78583 4.88358 4.90917 4.92992 4.93447 4.99712 5.02689 5.10608 5.15385 5.22506 5.27097 5.28128 5.32607 5.33777 5.43855 5.46090 5.53825 5.55710 5.63945 6.26619 6.38085 6.50332 7.15890 7.32407 8.09157 8.32920 9.27144 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011032 B = 0.001930 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.520260 B =14502.161933 C =16379.342637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.044 3.956 3 O -0.337 6.337 4 C 0.112 3.888 5 C -0.180 4.180 6 C -0.081 4.081 7 C -0.120 4.120 8 C -0.110 4.110 9 C 0.557 3.443 10 O -0.580 6.580 11 N -0.703 5.703 12 C 0.142 3.858 13 H 0.068 0.932 14 C -0.157 4.157 15 C -0.116 4.116 16 C -0.107 4.107 17 C -0.111 4.111 18 C 0.147 3.853 19 N -0.748 5.748 20 C -0.253 4.253 21 H 0.072 0.928 22 C -0.075 4.075 23 N -0.968 5.968 24 Si 0.976 3.024 25 H -0.279 1.279 26 H -0.292 1.292 27 H -0.276 1.276 28 C -0.120 4.120 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.159 0.841 35 H 0.166 0.834 36 H 0.153 0.847 37 H 0.413 0.587 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.040 0.960 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.053 0.947 44 H 0.065 0.935 45 H 0.057 0.943 46 H 0.065 0.935 47 H 0.018 0.982 48 H 0.011 0.989 49 H 0.374 0.626 50 H 0.252 0.748 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.994 -11.641 20.154 32.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.030 4.030 3 O -0.252 6.252 4 C 0.067 3.933 5 C -0.199 4.199 6 C -0.099 4.099 7 C -0.139 4.139 8 C -0.113 4.113 9 C 0.345 3.655 10 O -0.461 6.461 11 N -0.355 5.355 12 C 0.038 3.962 13 H 0.086 0.914 14 C -0.216 4.216 15 C -0.153 4.153 16 C -0.145 4.145 17 C -0.149 4.149 18 C 0.021 3.979 19 N -0.391 5.391 20 C -0.385 4.385 21 H 0.090 0.910 22 C -0.267 4.267 23 N -0.619 5.619 24 Si 0.804 3.196 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.202 1.202 28 C -0.140 4.140 29 H 0.078 0.922 30 H 0.121 0.879 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.176 0.824 35 H 0.183 0.817 36 H 0.171 0.829 37 H 0.251 0.749 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.084 0.916 47 H 0.036 0.964 48 H 0.029 0.971 49 H 0.206 0.794 50 H 0.061 0.939 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -23.709 -10.848 19.988 32.853 hybrid contribution 0.691 -0.258 -0.978 1.225 sum -23.018 -11.106 19.010 31.852 Atomic orbital electron populations 1.21824 0.91829 1.04240 1.03009 1.23125 0.96774 0.80432 1.02705 1.86088 1.18596 1.31807 1.88672 1.18917 0.83241 0.93752 0.97436 1.21796 0.94613 0.98732 1.04711 1.21336 0.94588 0.97876 0.96104 1.21534 1.00580 0.91611 1.00175 1.19673 0.93392 0.93129 1.05137 1.18480 0.82815 0.88652 0.75581 1.90746 1.60689 1.42817 1.51837 1.45947 1.05772 1.10105 1.73689 1.21038 0.94790 0.83014 0.97356 0.91388 1.22120 1.01650 1.02452 0.95330 1.21848 0.94724 1.04187 0.94581 1.21440 0.95438 1.01878 0.95712 1.21591 0.97989 1.01420 0.93924 1.20860 0.86342 0.97128 0.93566 1.42606 1.04052 1.83330 1.09095 1.19625 0.92742 1.37719 0.88373 0.90968 1.25598 0.95279 1.03303 1.02553 1.69808 0.97970 1.57040 1.37043 0.85186 0.76328 0.78317 0.79778 1.20542 1.21815 1.20227 1.20431 0.94411 0.95793 1.03359 0.92228 0.87925 0.92016 0.90719 0.90407 0.82367 0.81653 0.82905 0.74851 0.90884 0.90284 0.94038 0.89408 0.89291 0.92800 0.91589 0.92397 0.91604 0.96405 0.97126 0.79373 0.93892 0.86219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 71.98 0.74 -0.45 16 2 C 0.04 0.44 5.46 71.98 0.39 0.84 16 3 O -0.34 -6.35 10.13 -92.57 -0.94 -7.29 16 4 C 0.11 2.16 6.68 22.47 0.15 2.31 16 5 C -0.18 -2.38 9.03 22.42 0.20 -2.17 16 6 C -0.08 -0.94 10.03 22.22 0.22 -0.72 16 7 C -0.12 -1.74 9.54 22.54 0.21 -1.53 16 8 C -0.11 -2.34 5.87 -20.10 -0.12 -2.46 16 9 C 0.56 13.73 7.74 86.79 0.67 14.40 16 10 O -0.58 -19.07 16.01 -3.85 -0.06 -19.13 16 11 N -0.70 -12.99 4.48 -445.40 -2.00 -14.99 16 12 C 0.14 2.70 2.57 44.99 0.12 2.82 16 13 H 0.07 1.64 7.58 -2.39 -0.02 1.62 16 14 C -0.16 -2.63 9.48 71.98 0.68 -1.95 16 15 C -0.12 -2.00 4.75 30.59 0.15 -1.86 16 16 C -0.11 -2.47 5.10 30.60 0.16 -2.32 16 17 C -0.11 -3.39 5.33 30.60 0.16 -3.22 16 18 C 0.15 6.03 6.26 86.38 0.54 6.57 16 19 N -0.75 -39.22 5.60 -343.46 -1.92 -41.14 16 20 C -0.25 -14.56 9.99 84.03 0.84 -13.72 16 21 H 0.07 4.01 7.83 -2.90 -0.02 3.99 16 22 C -0.07 -4.38 5.50 84.86 0.47 -3.91 16 23 N -0.97 -59.73 13.06 21.65 0.28 -59.44 16 24 Si 0.98 46.57 29.55 68.60 2.03 48.60 16 25 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 26 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 27 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 28 C -0.12 -2.82 9.53 22.63 0.22 -2.61 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.57 7.65 -2.39 -0.02 0.55 16 33 H 0.08 0.53 7.66 -2.39 -0.02 0.51 16 34 H 0.16 1.15 6.28 -2.91 -0.02 1.13 16 35 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 36 H 0.15 1.38 6.40 -2.91 -0.02 1.36 16 37 H 0.41 5.33 6.63 -92.71 -0.61 4.72 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 39 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.04 0.85 8.14 -2.39 -0.02 0.84 16 41 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.07 1.47 7.75 -2.39 -0.02 1.45 16 45 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 49 H 0.37 20.56 7.67 -92.70 -0.71 19.85 16 50 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 51 H 0.12 3.24 7.65 -2.91 -0.02 3.21 16 Total: -1.00 -76.82 418.62 2.79 -74.03 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: -0.41 Total: 29.34 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 5.80 Total: -9.99 kcal Atomic # 7 Polarization: -111.93 SS G_CDS: -3.64 Total: -115.57 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -1.00 Total: -26.41 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -76.82 2.79 -74.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175470017.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.636 kcal (2) G-P(sol) polarization free energy of solvation -76.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds