Wall clock time and date at job start Tue Mar 31 2020 19:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.47140 * 2 1 4 4 C 1.35913 * 116.99980 * 179.97438 * 3 2 1 5 5 C 1.38856 * 119.98287 * 0.03134 * 4 3 2 6 6 C 1.38249 * 120.23444 * 179.97438 * 5 4 3 7 7 C 1.38006 * 120.20763 * 359.67283 * 6 5 4 8 8 C 1.39566 * 119.96639 * 0.59790 * 7 6 5 9 9 C 1.47855 * 120.11907 * 179.69887 * 8 7 6 10 10 O 1.21553 * 119.99955 * 179.72847 * 9 8 7 11 11 N 1.34777 * 119.99755 * 359.72548 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72373 * 11 9 8 13 13 H 1.08999 * 109.47480 * 35.27807 * 12 11 9 14 14 C 1.53008 * 109.47014 * 275.27733 * 12 11 9 15 15 C 1.52999 * 109.47493 * 155.28120 * 12 11 9 16 16 C 1.53008 * 109.46593 * 295.00052 * 15 12 11 17 17 C 1.53002 * 109.47094 * 179.97438 * 16 15 12 18 18 C 1.52998 * 109.47068 * 180.02562 * 17 16 15 19 19 N 1.46504 * 109.46758 * 180.02562 * 18 17 16 20 20 C 1.36937 * 119.99596 * 179.97438 * 19 18 17 21 21 H 1.07999 * 120.00144 * 0.02562 * 20 19 18 22 22 C 1.38812 * 119.99977 * 179.97438 * 20 19 18 23 23 N 1.31622 * 119.99847 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00091 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47502 * 89.99845 * 24 22 20 26 26 H 1.48501 * 109.46840 * 209.99683 * 24 22 20 27 27 H 1.48498 * 109.47059 * 329.99782 * 24 22 20 28 28 C 1.38453 * 119.98477 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.47178 * 59.99481 * 1 2 3 30 30 H 1.08998 * 109.47036 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46667 * 300.00123 * 1 2 3 32 32 H 1.09003 * 109.47118 * 240.00163 * 2 1 3 33 33 H 1.08998 * 109.47628 * 120.00231 * 2 1 3 34 34 H 1.07996 * 119.87937 * 359.96578 * 5 4 3 35 35 H 1.08000 * 119.89249 * 179.97438 * 6 5 4 36 36 H 1.08002 * 120.01860 * 180.30379 * 7 6 5 37 37 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 38 38 H 1.09000 * 109.47169 * 299.99790 * 14 12 11 39 39 H 1.08995 * 109.47066 * 60.00517 * 14 12 11 40 40 H 1.09005 * 109.46722 * 180.02562 * 14 12 11 41 41 H 1.08998 * 109.47257 * 54.99513 * 15 12 11 42 42 H 1.08993 * 109.47436 * 175.00131 * 15 12 11 43 43 H 1.08998 * 109.46879 * 299.99693 * 16 15 12 44 44 H 1.09001 * 109.47112 * 59.99648 * 16 15 12 45 45 H 1.09003 * 109.47046 * 300.00184 * 17 16 15 46 46 H 1.09002 * 109.46848 * 59.99557 * 17 16 15 47 47 H 1.08998 * 109.46809 * 300.00061 * 18 17 16 48 48 H 1.08993 * 109.47261 * 60.00298 * 18 17 16 49 49 H 0.96997 * 120.00337 * 359.97438 * 19 18 17 50 50 H 0.97005 * 119.99713 * 179.97438 * 23 22 20 51 51 H 1.07998 * 120.10360 * 0.04908 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3538 1.5254 0.0005 5 6 4.1993 0.4239 0.0004 6 6 5.5706 0.5990 0.0004 7 6 6.1083 1.8700 -0.0062 8 6 5.2665 2.9831 -0.0004 9 6 5.8390 4.3464 -0.0008 10 8 5.1037 5.3143 -0.0007 11 7 7.1760 4.5157 -0.0012 12 6 7.7433 5.8664 -0.0077 13 1 7.1103 6.5292 0.5823 14 6 7.8189 6.3809 -1.4467 15 6 9.1487 5.8324 0.5961 16 6 9.0602 5.4375 2.0717 17 6 10.4656 5.4029 2.6755 18 6 10.3772 5.0074 4.1509 19 7 11.7229 4.9748 4.7291 20 6 11.8940 4.6444 6.0469 21 1 11.0370 4.4074 6.6599 22 6 13.1691 4.6129 6.5948 23 7 14.2137 4.9003 5.8473 24 14 13.4025 4.1614 8.3923 25 1 13.5833 2.6926 8.5143 26 1 14.6035 4.8539 8.9246 27 1 12.2063 4.5789 9.1669 28 6 3.8826 2.8049 0.0011 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.7841 -0.5731 0.0004 35 1 6.2231 -0.2616 0.0007 36 1 7.1801 2.0033 -0.0112 37 1 7.7628 3.7433 -0.0016 38 1 8.4519 5.7182 -2.0367 39 1 6.8177 6.4053 -1.8769 40 1 8.2413 7.3857 -1.4515 41 1 9.7566 5.1031 0.0607 42 1 9.6049 6.8185 0.5106 43 1 8.4523 6.1668 2.6071 44 1 8.6039 4.4513 2.1573 45 1 11.0732 4.6734 2.1400 46 1 10.9223 6.3889 2.5899 47 1 9.7695 5.7366 4.6866 48 1 9.9209 4.0213 4.2360 49 1 12.4927 5.1873 4.1785 50 1 15.1047 4.8787 6.2303 51 1 3.2261 3.6624 0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175470018.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:40 Heat of formation + Delta-G solvation = -62.313324 kcal Electronic energy + Delta-G solvation = -27504.765250 eV Core-core repulsion = 23596.868413 eV Total energy + Delta-G solvation = -3907.896837 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.82637 -39.83874 -37.72590 -36.85641 -35.25710 -33.32685 -32.51082 -32.03345 -31.07207 -30.30653 -29.58256 -27.43434 -25.17655 -24.21670 -23.28782 -22.81082 -22.04391 -20.95019 -20.69104 -20.56010 -18.98280 -17.02299 -16.99285 -16.72252 -16.57170 -16.28360 -15.85767 -15.20381 -15.04268 -14.69687 -14.44229 -14.04962 -13.98296 -13.82382 -13.72248 -13.49106 -13.14977 -13.08484 -12.93395 -12.91572 -12.50889 -12.37475 -12.30772 -12.08485 -11.75116 -11.45199 -11.33472 -11.25233 -11.21664 -10.98500 -10.79551 -10.69294 -10.40902 -10.29141 -10.12212 -9.97168 -9.65106 -9.46044 -9.19931 -8.84050 -8.65814 -6.88359 -5.73852 -3.02062 0.46615 1.01671 2.60220 2.61126 3.05318 3.45151 3.50085 3.52137 3.52942 4.29327 4.32499 4.41960 4.52077 4.56939 4.59962 4.65104 4.72412 4.76069 4.88883 4.93541 4.99728 5.08039 5.19909 5.27467 5.29258 5.41713 5.46791 5.54107 5.54564 5.56670 5.62750 5.70973 5.78405 5.82773 5.90733 5.94073 5.95884 5.97834 6.12004 6.19172 6.24832 6.32630 6.39788 6.40733 6.48974 6.92036 6.95874 6.96899 7.29853 7.72751 8.00646 8.45629 9.56345 10.15768 10.50420 11.49240 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011071 B = 0.001927 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.504547 B =14530.162965 C =16398.585321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.053 3.947 3 O -0.314 6.314 4 C 0.122 3.878 5 C -0.186 4.186 6 C -0.085 4.085 7 C -0.123 4.123 8 C -0.094 4.094 9 C 0.560 3.440 10 O -0.535 6.535 11 N -0.715 5.715 12 C 0.140 3.860 13 H 0.091 0.909 14 C -0.163 4.163 15 C -0.127 4.127 16 C -0.115 4.115 17 C -0.125 4.125 18 C 0.152 3.848 19 N -0.735 5.735 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C -0.094 4.094 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.401 0.599 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.017 0.983 48 H 0.016 0.984 49 H 0.383 0.617 50 H 0.254 0.746 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.520 -9.371 -19.688 32.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.228 6.228 4 C 0.077 3.923 5 C -0.205 4.205 6 C -0.103 4.103 7 C -0.142 4.142 8 C -0.097 4.097 9 C 0.347 3.653 10 O -0.412 6.412 11 N -0.367 5.367 12 C 0.036 3.964 13 H 0.109 0.891 14 C -0.222 4.222 15 C -0.165 4.165 16 C -0.153 4.153 17 C -0.163 4.163 18 C 0.024 3.976 19 N -0.379 5.379 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.212 4.212 23 N -0.584 5.584 24 Si 0.738 3.262 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.113 4.113 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.236 0.764 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.034 0.966 48 H 0.034 0.966 49 H 0.216 0.784 50 H 0.064 0.936 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -24.226 -8.548 -19.506 32.256 hybrid contribution 0.904 -0.931 0.865 1.560 sum -23.322 -9.479 -18.640 31.325 Atomic orbital electron populations 1.21782 0.92540 1.02956 1.03726 1.22825 0.96106 0.81773 1.01467 1.86106 1.18606 1.29481 1.88616 1.18820 0.82656 0.93716 0.97110 1.21452 0.94480 0.98226 1.06358 1.20910 0.94346 0.97311 0.97729 1.21246 0.99687 0.91979 1.01273 1.19717 0.93315 0.93198 1.03478 1.18161 0.82422 0.88417 0.76306 1.90779 1.59572 1.41339 1.49535 1.46021 1.06319 1.09590 1.74806 1.21092 0.95158 0.83241 0.96866 0.89133 1.22183 1.02325 1.01423 0.96231 1.21946 0.94752 1.03182 0.96609 1.21532 0.97907 1.01665 0.94198 1.21725 0.95783 1.01723 0.97089 1.20651 0.88902 0.97217 0.90790 1.42387 1.02279 1.83531 1.09675 1.19264 0.92448 1.38284 0.86978 0.91230 1.24747 0.95526 1.02754 0.98154 1.69667 0.97783 1.55793 1.35127 0.86178 0.77169 0.77918 0.84889 1.21753 1.21755 1.20774 1.20461 0.94067 0.95536 1.01244 0.91433 0.90263 0.91354 0.91945 0.91853 0.85081 0.84901 0.85236 0.76363 0.92453 0.92213 0.91401 0.91318 0.90067 0.91914 0.92130 0.92143 0.92034 0.96555 0.96628 0.78357 0.93572 0.83839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 10.28 37.16 0.38 -0.28 16 2 C 0.05 0.30 5.46 37.16 0.20 0.51 16 3 O -0.31 -2.91 10.13 -19.47 -0.20 -3.11 16 4 C 0.12 1.18 6.68 -39.27 -0.26 0.92 16 5 C -0.19 -1.43 9.03 -39.35 -0.36 -1.79 16 6 C -0.08 -0.62 10.03 -39.66 -0.40 -1.02 16 7 C -0.12 -1.01 9.54 -39.17 -0.37 -1.39 16 8 C -0.09 -0.99 5.87 -104.99 -0.62 -1.61 16 9 C 0.56 6.72 7.74 -12.32 -0.10 6.62 16 10 O -0.53 -8.21 16.01 5.32 0.09 -8.12 16 11 N -0.72 -6.94 4.48 -54.74 -0.25 -7.18 16 12 C 0.14 1.40 2.57 -67.93 -0.17 1.22 16 13 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 14 C -0.16 -1.46 9.48 37.16 0.35 -1.11 16 15 C -0.13 -1.24 4.75 -26.73 -0.13 -1.37 16 16 C -0.11 -1.42 5.10 -26.73 -0.14 -1.56 16 17 C -0.13 -1.99 5.33 -26.73 -0.14 -2.13 16 18 C 0.15 3.15 6.26 -4.04 -0.03 3.13 16 19 N -0.73 -19.27 5.60 -59.91 -0.34 -19.61 16 20 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 21 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 22 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 23 N -0.93 -28.74 13.06 55.49 0.72 -28.02 16 24 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 28 C -0.09 -1.03 9.53 -39.02 -0.37 -1.40 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 33 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 34 H 0.13 0.70 6.28 -52.49 -0.33 0.37 16 35 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.13 0.79 6.40 -52.49 -0.34 0.45 16 37 H 0.40 3.03 6.63 -40.82 -0.27 2.76 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.73 7.75 -51.93 -0.40 0.33 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.38 10.45 7.67 -40.82 -0.31 10.14 16 50 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 51 H 0.14 1.68 7.65 -52.49 -0.40 1.28 16 LS Contribution 418.63 15.07 6.31 6.31 Total: -1.00 -34.76 418.63 -9.78 -44.54 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -8.71 Total: 6.30 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -2.39 Total: -8.87 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.14 Total: -54.81 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -0.11 Total: -11.23 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -34.76 -9.78 -44.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175470018.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.771 kcal (2) G-P(sol) polarization free energy of solvation -34.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds