Wall clock time and date at job start Tue Mar 31 2020 19:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47425 * 2 1 4 4 C 1.35647 * 116.99912 * 179.97438 * 3 2 1 5 5 C 1.38701 * 120.15412 * 359.97438 * 4 3 2 6 6 C 1.38055 * 120.08542 * 180.02562 * 5 4 3 7 7 C 1.38545 * 120.39246 * 359.97438 * 6 5 4 8 8 C 1.37791 * 120.29873 * 359.97438 * 7 6 5 9 9 C 1.39703 * 119.90696 * 0.02562 * 8 7 6 10 10 C 1.47533 * 120.18898 * 179.97438 * 9 8 7 11 11 O 1.21598 * 119.99752 * 179.97438 * 10 9 8 12 12 N 1.34779 * 120.00216 * 359.97438 * 10 9 8 13 13 C 1.46499 * 119.99854 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47543 * 35.00292 * 13 12 10 15 15 C 1.52998 * 109.47011 * 274.99676 * 13 12 10 16 16 C 1.53004 * 109.46815 * 155.00005 * 13 12 10 17 17 C 1.52999 * 109.47350 * 294.99818 * 16 13 12 18 18 C 1.52998 * 109.47360 * 180.02562 * 17 16 13 19 19 C 1.53001 * 109.47053 * 180.02562 * 18 17 16 20 20 N 1.46503 * 109.47148 * 179.97438 * 19 18 17 21 21 C 1.36934 * 120.00305 * 179.97438 * 20 19 18 22 22 H 1.08002 * 119.99677 * 0.02562 * 21 20 19 23 23 C 1.38804 * 120.00136 * 179.97438 * 21 20 19 24 24 N 1.31624 * 120.00421 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00101 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46804 * 90.00080 * 25 23 21 27 27 H 1.48497 * 109.47212 * 209.99953 * 25 23 21 28 28 H 1.48500 * 109.46851 * 330.00110 * 25 23 21 29 29 H 1.08997 * 109.47064 * 300.00910 * 1 2 3 30 30 H 1.08997 * 109.46378 * 60.00341 * 1 2 3 31 31 H 1.09002 * 109.47101 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47568 * 239.99159 * 2 1 3 33 33 H 1.09000 * 109.46880 * 119.99587 * 2 1 3 34 34 H 1.08004 * 119.95652 * 359.97438 * 5 4 3 35 35 H 1.08010 * 119.80566 * 179.69879 * 6 5 4 36 36 H 1.08000 * 119.85288 * 179.97438 * 7 6 5 37 37 H 1.07995 * 120.04268 * 179.97438 * 8 7 6 38 38 H 0.96992 * 119.99567 * 0.02562 * 12 10 9 39 39 H 1.08997 * 109.47218 * 60.00628 * 15 13 12 40 40 H 1.09005 * 109.46911 * 179.97438 * 15 13 12 41 41 H 1.08995 * 109.47180 * 299.99982 * 15 13 12 42 42 H 1.08993 * 109.47349 * 54.99941 * 16 13 12 43 43 H 1.09007 * 109.47025 * 174.99826 * 16 13 12 44 44 H 1.09007 * 109.47181 * 300.00272 * 17 16 13 45 45 H 1.09002 * 109.47038 * 59.99526 * 17 16 13 46 46 H 1.09007 * 109.46549 * 299.99724 * 18 17 16 47 47 H 1.08998 * 109.47057 * 59.99929 * 18 17 16 48 48 H 1.08998 * 109.47421 * 299.99705 * 19 18 17 49 49 H 1.08998 * 109.47418 * 59.99941 * 19 18 17 50 50 H 0.97007 * 119.99681 * 359.97438 * 20 19 18 51 51 H 0.96990 * 120.00502 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3512 1.5249 0.0005 5 6 4.1990 0.4272 0.0016 6 6 5.5675 0.6096 0.0027 7 6 6.1043 1.8868 0.0022 8 6 5.2769 2.9886 0.0001 9 6 3.8903 2.8185 -0.0010 10 6 2.9987 3.9939 -0.0027 11 8 1.7922 3.8418 -0.0042 12 7 3.5212 5.2362 -0.0027 13 6 2.6357 6.4033 -0.0038 14 1 1.7450 6.1842 0.5850 15 6 2.2286 6.7332 -1.4412 16 6 3.3686 7.6000 0.6061 17 6 3.6657 7.3188 2.0804 18 6 4.3979 8.5157 2.6904 19 6 4.6956 8.2342 4.1645 20 7 5.3973 9.3800 4.7485 21 6 5.7687 9.3564 6.0663 22 1 5.5447 8.4929 6.6751 23 6 6.4340 10.4418 6.6195 24 7 6.7074 11.4940 5.8775 25 14 6.9400 10.4099 8.4174 26 1 8.3018 9.8302 8.5381 27 1 6.9416 11.7938 8.9558 28 1 5.9787 9.5803 9.1874 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7881 -0.5716 0.0024 35 1 6.2235 -0.2485 0.0084 36 1 7.1761 2.0194 0.0035 37 1 5.6999 3.9823 0.0001 38 1 4.4835 5.3575 -0.0019 39 1 1.7065 5.8807 -1.8757 40 1 1.5694 7.6013 -1.4420 41 1 3.1193 6.9524 -2.0299 42 1 4.3043 7.7639 0.0717 43 1 2.7431 8.4891 0.5246 44 1 2.7299 7.1549 2.6148 45 1 4.2910 6.4297 2.1618 46 1 5.3337 8.6799 2.1560 47 1 3.7722 9.4044 2.6090 48 1 3.7601 8.0696 4.6992 49 1 5.3215 7.3455 4.2456 50 1 5.5988 10.1554 4.2016 51 1 7.1720 12.2526 6.2641 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176402374.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:53 Heat of formation + Delta-G solvation = -59.500514 kcal Electronic energy + Delta-G solvation = -28122.096902 eV Core-core repulsion = 24214.322037 eV Total energy + Delta-G solvation = -3907.774864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.86515 -39.39585 -37.74336 -36.79622 -35.18619 -33.26312 -32.40572 -32.07537 -30.84056 -30.09558 -29.73599 -27.39684 -24.66181 -24.37924 -23.82511 -22.13462 -21.96842 -21.01707 -20.66666 -20.44613 -18.80059 -17.49288 -16.97775 -16.63580 -16.46092 -15.85178 -15.35198 -15.08956 -15.05100 -14.79168 -14.62554 -13.90320 -13.84631 -13.73230 -13.58331 -13.38243 -13.10994 -12.92882 -12.88035 -12.81842 -12.33911 -12.31217 -12.23969 -11.96970 -11.70929 -11.43216 -11.36811 -11.20853 -11.10697 -10.94635 -10.77970 -10.65630 -10.38114 -10.25621 -9.95935 -9.83674 -9.63237 -9.44198 -9.09279 -8.82829 -8.55368 -6.87033 -5.72574 -3.00791 0.55570 1.04295 2.75196 2.83719 3.06184 3.46040 3.50830 3.52972 3.59441 4.33245 4.35322 4.55551 4.55855 4.61843 4.68731 4.70513 4.82752 4.88354 4.94767 4.99061 5.05237 5.06905 5.32425 5.34178 5.42343 5.46837 5.47987 5.52083 5.58691 5.67476 5.71180 5.76061 5.80756 5.84569 5.89214 5.99068 6.02119 6.06507 6.17279 6.29533 6.32198 6.35703 6.42715 6.49577 6.51999 6.94227 6.98061 7.06712 7.45759 7.73811 8.21678 8.46936 9.57530 10.17127 10.51802 11.50562 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012437 B = 0.002047 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.761685 B =13677.986134 C =14512.733489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.279 6.279 4 C 0.187 3.813 5 C -0.223 4.223 6 C -0.053 4.053 7 C -0.167 4.167 8 C -0.046 4.046 9 C -0.173 4.173 10 C 0.561 3.439 11 O -0.521 6.521 12 N -0.722 5.722 13 C 0.143 3.857 14 H 0.089 0.911 15 C -0.162 4.162 16 C -0.127 4.127 17 C -0.114 4.114 18 C -0.125 4.125 19 C 0.152 3.848 20 N -0.735 5.735 21 C -0.237 4.237 22 H 0.070 0.930 23 C -0.017 4.017 24 N -0.935 5.935 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.397 0.603 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.016 0.984 49 H 0.016 0.984 50 H 0.383 0.617 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.975 -24.343 -19.748 32.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.190 6.190 4 C 0.138 3.862 5 C -0.242 4.242 6 C -0.072 4.072 7 C -0.185 4.185 8 C -0.065 4.065 9 C -0.177 4.177 10 C 0.348 3.652 11 O -0.397 6.397 12 N -0.375 5.375 13 C 0.039 3.961 14 H 0.107 0.893 15 C -0.221 4.221 16 C -0.165 4.165 17 C -0.152 4.152 18 C -0.163 4.163 19 C 0.024 3.976 20 N -0.379 5.379 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.213 4.213 24 N -0.584 5.584 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.232 0.768 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.034 0.966 49 H 0.034 0.966 50 H 0.216 0.784 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.041 -24.345 -19.568 32.253 hybrid contribution 1.118 0.080 0.869 1.418 sum -6.924 -24.264 -18.699 31.406 Atomic orbital electron populations 1.21738 0.92430 1.02537 1.04023 1.22890 0.96479 0.82182 1.01155 1.86379 1.17708 1.28459 1.86457 1.19013 0.83182 0.92622 0.91360 1.21255 0.94412 0.98028 1.10513 1.21140 0.94269 0.97614 0.94145 1.21020 1.00332 0.92148 1.05048 1.21215 0.91199 0.99664 0.94386 1.19399 0.93639 0.91414 1.13264 1.17956 0.87888 0.82726 0.76647 1.90816 1.14351 1.85868 1.48676 1.46007 1.10273 1.05327 1.75894 1.21020 0.93879 0.84581 0.96648 0.89313 1.22173 1.01537 1.01937 0.96432 1.21940 1.00849 0.97121 0.96549 1.21522 1.00779 0.98703 0.94236 1.21725 0.99997 0.97549 0.97036 1.20653 0.94815 0.91300 0.90784 1.42396 1.68683 1.17090 1.09727 1.19257 1.29796 1.00791 0.87003 0.91246 1.24752 1.01729 0.96615 0.98178 1.69661 1.46828 1.06708 1.35211 0.86175 0.78398 0.76668 0.84898 1.21748 1.21771 1.20778 0.91265 0.91379 0.90505 0.92094 0.92000 0.84926 0.85314 0.85104 0.84873 0.76754 0.92275 0.91576 0.92559 0.91396 0.90203 0.91976 0.92135 0.92155 0.92061 0.96565 0.96626 0.78354 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.64 16 2 C 0.05 0.37 5.46 37.16 0.20 0.57 16 3 O -0.28 -3.36 8.21 -40.52 -0.33 -3.69 16 4 C 0.19 2.08 6.70 -38.70 -0.26 1.82 16 5 C -0.22 -1.85 9.03 -39.48 -0.36 -2.21 16 6 C -0.05 -0.38 10.03 -39.54 -0.40 -0.78 16 7 C -0.17 -1.24 10.02 -39.63 -0.40 -1.64 16 8 C -0.05 -0.39 9.53 -39.20 -0.37 -0.77 16 9 C -0.17 -1.96 5.89 -104.85 -0.62 -2.58 16 10 C 0.56 7.29 7.73 -12.47 -0.10 7.20 16 11 O -0.52 -8.56 14.82 -16.60 -0.25 -8.81 16 12 N -0.72 -7.57 4.48 -54.85 -0.25 -7.81 16 13 C 0.14 1.52 2.57 -67.93 -0.17 1.35 16 14 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 15 C -0.16 -1.56 9.48 37.16 0.35 -1.21 16 16 C -0.13 -1.31 4.75 -26.73 -0.13 -1.43 16 17 C -0.11 -1.47 5.10 -26.73 -0.14 -1.61 16 18 C -0.13 -2.03 5.33 -26.73 -0.14 -2.18 16 19 C 0.15 3.20 6.26 -4.04 -0.03 3.17 16 20 N -0.74 -19.44 5.60 -59.91 -0.34 -19.78 16 21 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 22 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 23 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 24 N -0.94 -28.91 13.06 55.49 0.72 -28.18 16 25 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 28 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 33 H 0.06 0.39 7.66 -51.93 -0.40 0.00 16 34 H 0.13 0.80 6.30 -52.48 -0.33 0.47 16 35 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 36 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.13 0.85 6.40 -52.49 -0.34 0.51 16 38 H 0.40 3.29 6.63 -40.82 -0.27 3.02 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.06 0.77 7.75 -51.93 -0.40 0.36 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.38 10.54 7.67 -40.82 -0.31 10.22 16 51 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 416.47 15.07 6.28 6.28 Total: -1.00 -35.68 416.47 -10.32 -46.01 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -8.73 Total: 6.69 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -2.41 Total: -8.57 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.14 Total: -55.77 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -0.58 Total: -12.50 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -35.68 -10.32 -46.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176402374.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.491 kcal (2) G-P(sol) polarization free energy of solvation -35.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds