Wall clock time and date at job start Tue Mar 31 2020 19:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47425 * 2 1 4 4 C 1.35647 * 116.99912 * 179.97438 * 3 2 1 5 5 C 1.38701 * 120.15412 * 359.97438 * 4 3 2 6 6 C 1.38055 * 120.08542 * 180.02562 * 5 4 3 7 7 C 1.38545 * 120.39246 * 359.97438 * 6 5 4 8 8 C 1.37791 * 120.29873 * 359.97438 * 7 6 5 9 9 C 1.39703 * 119.90696 * 0.02562 * 8 7 6 10 10 C 1.47533 * 120.18898 * 179.97438 * 9 8 7 11 11 O 1.21598 * 119.99752 * 179.97438 * 10 9 8 12 12 N 1.34779 * 120.00216 * 359.97438 * 10 9 8 13 13 C 1.46499 * 119.99854 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47543 * 35.00292 * 13 12 10 15 15 C 1.52998 * 109.47011 * 274.99676 * 13 12 10 16 16 C 1.53004 * 109.46815 * 155.00005 * 13 12 10 17 17 C 1.52999 * 109.47350 * 294.99818 * 16 13 12 18 18 C 1.52998 * 109.47360 * 180.02562 * 17 16 13 19 19 C 1.53001 * 109.47053 * 180.02562 * 18 17 16 20 20 N 1.46503 * 109.47148 * 179.97438 * 19 18 17 21 21 C 1.36934 * 120.00305 * 179.97438 * 20 19 18 22 22 H 1.08002 * 119.99677 * 0.02562 * 21 20 19 23 23 C 1.38804 * 120.00136 * 179.97438 * 21 20 19 24 24 N 1.31624 * 120.00421 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00101 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46804 * 90.00080 * 25 23 21 27 27 H 1.48497 * 109.47212 * 209.99953 * 25 23 21 28 28 H 1.48500 * 109.46851 * 330.00110 * 25 23 21 29 29 H 1.08997 * 109.47064 * 300.00910 * 1 2 3 30 30 H 1.08997 * 109.46378 * 60.00341 * 1 2 3 31 31 H 1.09002 * 109.47101 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47568 * 239.99159 * 2 1 3 33 33 H 1.09000 * 109.46880 * 119.99587 * 2 1 3 34 34 H 1.08004 * 119.95652 * 359.97438 * 5 4 3 35 35 H 1.08010 * 119.80566 * 179.69879 * 6 5 4 36 36 H 1.08000 * 119.85288 * 179.97438 * 7 6 5 37 37 H 1.07995 * 120.04268 * 179.97438 * 8 7 6 38 38 H 0.96992 * 119.99567 * 0.02562 * 12 10 9 39 39 H 1.08997 * 109.47218 * 60.00628 * 15 13 12 40 40 H 1.09005 * 109.46911 * 179.97438 * 15 13 12 41 41 H 1.08995 * 109.47180 * 299.99982 * 15 13 12 42 42 H 1.08993 * 109.47349 * 54.99941 * 16 13 12 43 43 H 1.09007 * 109.47025 * 174.99826 * 16 13 12 44 44 H 1.09007 * 109.47181 * 300.00272 * 17 16 13 45 45 H 1.09002 * 109.47038 * 59.99526 * 17 16 13 46 46 H 1.09007 * 109.46549 * 299.99724 * 18 17 16 47 47 H 1.08998 * 109.47057 * 59.99929 * 18 17 16 48 48 H 1.08998 * 109.47421 * 299.99705 * 19 18 17 49 49 H 1.08998 * 109.47418 * 59.99941 * 19 18 17 50 50 H 0.97007 * 119.99681 * 359.97438 * 20 19 18 51 51 H 0.96990 * 120.00502 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3512 1.5249 0.0005 5 6 4.1990 0.4272 0.0016 6 6 5.5675 0.6096 0.0027 7 6 6.1043 1.8868 0.0022 8 6 5.2769 2.9886 0.0001 9 6 3.8903 2.8185 -0.0010 10 6 2.9987 3.9939 -0.0027 11 8 1.7922 3.8418 -0.0042 12 7 3.5212 5.2362 -0.0027 13 6 2.6357 6.4033 -0.0038 14 1 1.7450 6.1842 0.5850 15 6 2.2286 6.7332 -1.4412 16 6 3.3686 7.6000 0.6061 17 6 3.6657 7.3188 2.0804 18 6 4.3979 8.5157 2.6904 19 6 4.6956 8.2342 4.1645 20 7 5.3973 9.3800 4.7485 21 6 5.7687 9.3564 6.0663 22 1 5.5447 8.4929 6.6751 23 6 6.4340 10.4418 6.6195 24 7 6.7074 11.4940 5.8775 25 14 6.9400 10.4099 8.4174 26 1 8.3018 9.8302 8.5381 27 1 6.9416 11.7938 8.9558 28 1 5.9787 9.5803 9.1874 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7881 -0.5716 0.0024 35 1 6.2235 -0.2485 0.0084 36 1 7.1761 2.0194 0.0035 37 1 5.6999 3.9823 0.0001 38 1 4.4835 5.3575 -0.0019 39 1 1.7065 5.8807 -1.8757 40 1 1.5694 7.6013 -1.4420 41 1 3.1193 6.9524 -2.0299 42 1 4.3043 7.7639 0.0717 43 1 2.7431 8.4891 0.5246 44 1 2.7299 7.1549 2.6148 45 1 4.2910 6.4297 2.1618 46 1 5.3337 8.6799 2.1560 47 1 3.7722 9.4044 2.6090 48 1 3.7601 8.0696 4.6992 49 1 5.3215 7.3455 4.2456 50 1 5.5988 10.1554 4.2016 51 1 7.1720 12.2526 6.2641 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176402374.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:52 Heat of formation + Delta-G solvation = -80.742723 kcal Electronic energy + Delta-G solvation = -28123.018033 eV Core-core repulsion = 24214.322037 eV Total energy + Delta-G solvation = -3908.695996 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.61462 -40.24806 -38.41073 -37.93792 -36.78551 -34.78005 -33.35115 -32.87508 -32.25511 -31.05769 -30.44057 -28.81651 -25.99421 -25.24133 -24.80641 -23.58508 -22.61073 -22.08087 -21.89765 -21.35143 -19.50849 -19.12042 -18.23790 -17.48999 -17.12019 -16.69093 -16.65936 -16.18853 -16.04881 -15.82886 -15.61031 -15.38863 -15.26599 -14.64260 -14.52013 -14.37879 -14.32708 -14.10378 -13.94874 -13.41856 -13.24942 -13.01433 -12.93270 -12.90690 -12.86877 -12.86499 -12.56424 -12.44834 -12.26425 -12.16245 -12.00811 -11.88399 -11.80395 -11.68751 -11.48742 -11.39341 -10.94277 -10.79725 -10.17821 -9.93847 -9.22566 -9.01883 -7.96759 -5.26171 -0.12480 0.41217 1.46229 1.48531 1.57192 1.93694 2.19779 2.25595 2.55036 2.87106 3.36215 3.57962 3.72588 3.78764 3.97042 4.01518 4.04385 4.05601 4.14284 4.17571 4.24259 4.33972 4.35738 4.40119 4.42802 4.48832 4.60720 4.65009 4.78267 4.81927 4.84418 4.87715 4.89178 4.93319 4.99052 5.02207 5.10803 5.15121 5.22757 5.26736 5.31621 5.33351 5.45171 5.45550 5.47402 5.52836 5.62313 5.77062 6.26119 6.41256 6.63082 7.31708 7.31831 8.08103 8.32115 9.26772 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012437 B = 0.002047 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.761685 B =13677.986134 C =14512.733489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.040 3.960 3 O -0.313 6.313 4 C 0.161 3.839 5 C -0.226 4.226 6 C -0.048 4.048 7 C -0.169 4.169 8 C -0.048 4.048 9 C -0.204 4.204 10 C 0.555 3.445 11 O -0.567 6.567 12 N -0.711 5.711 13 C 0.145 3.855 14 H 0.064 0.936 15 C -0.156 4.156 16 C -0.115 4.115 17 C -0.105 4.105 18 C -0.111 4.111 19 C 0.148 3.852 20 N -0.749 5.749 21 C -0.250 4.250 22 H 0.072 0.928 23 C -0.077 4.077 24 N -0.969 5.969 25 Si 0.977 3.023 26 H -0.284 1.284 27 H -0.293 1.293 28 H -0.271 1.271 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.153 0.847 35 H 0.161 0.839 36 H 0.157 0.843 37 H 0.152 0.848 38 H 0.409 0.591 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.052 0.948 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.058 0.942 48 H 0.011 0.989 49 H 0.018 0.982 50 H 0.375 0.625 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.360 -25.833 -20.077 33.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 O -0.226 6.226 4 C 0.113 3.887 5 C -0.244 4.244 6 C -0.066 4.066 7 C -0.186 4.186 8 C -0.066 4.066 9 C -0.208 4.208 10 C 0.344 3.656 11 O -0.447 6.447 12 N -0.365 5.365 13 C 0.041 3.959 14 H 0.082 0.918 15 C -0.214 4.214 16 C -0.153 4.153 17 C -0.143 4.143 18 C -0.149 4.149 19 C 0.022 3.978 20 N -0.391 5.391 21 C -0.382 4.382 22 H 0.090 0.910 23 C -0.270 4.270 24 N -0.619 5.619 25 Si 0.805 3.195 26 H -0.211 1.211 27 H -0.219 1.219 28 H -0.196 1.196 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.124 0.876 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.171 0.829 35 H 0.179 0.821 36 H 0.175 0.825 37 H 0.169 0.831 38 H 0.247 0.753 39 H 0.057 0.943 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.029 0.971 49 H 0.036 0.964 50 H 0.206 0.794 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.413 -25.860 -19.907 33.259 hybrid contribution 0.621 0.461 0.953 1.227 sum -5.792 -25.399 -18.954 32.216 Atomic orbital electron populations 1.21773 0.92254 1.03947 1.02572 1.23142 0.96719 0.81004 1.02549 1.86341 1.18650 1.30757 1.86840 1.19378 0.83320 0.93543 0.92418 1.21533 0.94816 0.98142 1.09937 1.21587 0.94119 0.98731 0.92158 1.21408 1.01527 0.91871 1.03844 1.21464 0.90133 1.01230 0.93822 1.19508 0.94617 0.90960 1.15732 1.18364 0.87636 0.83788 0.75827 1.90779 1.16306 1.86573 1.51090 1.45937 1.10903 1.04691 1.74933 1.20952 0.93184 0.84690 0.97098 0.91773 1.22103 1.02218 1.01542 0.95516 1.21841 1.01827 0.97030 0.94592 1.21423 0.99893 0.97308 0.95721 1.21590 1.00569 0.98772 0.93960 1.20853 0.93800 0.89654 0.93541 1.42625 1.69118 1.18228 1.09154 1.19646 1.29382 1.00852 0.88310 0.90965 1.25624 1.02277 0.96399 1.02657 1.69814 1.47816 1.07292 1.37017 0.85098 0.78201 0.76537 0.79673 1.21063 1.21912 1.19622 0.92898 0.92599 0.87598 0.90363 0.90714 0.82901 0.82121 0.82513 0.83090 0.75321 0.94257 0.90396 0.91016 0.89536 0.89374 0.92904 0.91740 0.91629 0.92354 0.97108 0.96427 0.79360 0.93876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 10.28 71.98 0.74 -1.36 16 2 C 0.04 0.62 5.46 71.98 0.39 1.01 16 3 O -0.31 -7.95 8.21 -68.69 -0.56 -8.52 16 4 C 0.16 3.64 6.70 22.84 0.15 3.79 16 5 C -0.23 -3.40 9.03 22.34 0.20 -3.20 16 6 C -0.05 -0.54 10.03 22.30 0.22 -0.32 16 7 C -0.17 -2.04 10.02 22.24 0.22 -1.82 16 8 C -0.05 -0.76 9.53 22.52 0.21 -0.54 16 9 C -0.20 -4.67 5.89 -20.01 -0.12 -4.79 16 10 C 0.55 15.02 7.73 86.69 0.67 15.69 16 11 O -0.57 -20.00 14.82 16.90 0.25 -19.75 16 12 N -0.71 -14.75 4.48 -445.69 -2.00 -16.74 16 13 C 0.15 3.04 2.57 44.99 0.12 3.16 16 14 H 0.06 1.69 7.58 -2.39 -0.02 1.67 16 15 C -0.16 -2.89 9.48 71.98 0.68 -2.20 16 16 C -0.12 -2.18 4.75 30.60 0.15 -2.03 16 17 C -0.11 -2.60 5.10 30.59 0.16 -2.44 16 18 C -0.11 -3.49 5.33 30.59 0.16 -3.33 16 19 C 0.15 6.17 6.26 86.38 0.54 6.71 16 20 N -0.75 -39.70 5.60 -343.46 -1.92 -41.63 16 21 C -0.25 -14.52 9.99 84.03 0.84 -13.68 16 22 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 23 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 24 N -0.97 -60.21 13.06 21.65 0.28 -59.93 16 25 Si 0.98 46.91 29.55 68.60 2.03 48.94 16 26 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 27 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 28 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.88 7.66 -2.39 -0.02 0.86 16 33 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 34 H 0.15 1.52 6.30 -2.91 -0.02 1.51 16 35 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 36 H 0.16 1.06 8.06 -2.91 -0.02 1.03 16 37 H 0.15 1.63 6.40 -2.91 -0.02 1.62 16 38 H 0.41 6.24 6.63 -92.71 -0.61 5.62 16 39 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 45 H 0.06 1.54 7.75 -2.39 -0.02 1.53 16 46 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 47 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 48 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.37 20.79 7.67 -92.70 -0.71 20.08 16 51 H 0.25 15.11 8.31 -92.72 -0.77 14.34 16 Total: -1.00 -79.15 416.47 3.48 -75.67 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: -0.41 Total: 31.39 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 5.81 Total: -9.43 kcal Atomic # 7 Polarization: -114.66 SS G_CDS: -3.64 Total: -118.30 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.31 Total: -28.26 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -79.15 3.48 -75.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176402374.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.072 kcal (2) G-P(sol) polarization free energy of solvation -79.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds