Wall clock time and date at job start Tue Mar 31 2020 19:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35713 * 116.99825 * 180.02562 * 3 2 1 5 5 C 1.38993 * 119.91220 * 359.72534 * 4 3 2 6 6 C 1.37700 * 120.08866 * 179.72768 * 5 4 3 7 7 C 1.39735 * 119.90695 * 0.56527 * 6 5 4 8 8 C 1.47602 * 120.08496 * 179.68393 * 7 6 5 9 9 O 1.21584 * 120.00051 * 180.02562 * 8 7 6 10 10 N 1.34775 * 119.99972 * 0.02564 * 8 7 6 11 11 C 1.46506 * 119.99938 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47195 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.46987 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.47242 * 179.97438 * 13 12 11 15 15 C 1.52992 * 109.47573 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.47319 * 180.02562 * 15 14 13 17 17 N 1.46506 * 109.47199 * 179.97438 * 16 15 14 18 18 C 1.36936 * 120.00063 * 179.97438 * 17 16 15 19 19 H 1.08003 * 120.00007 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99797 * 179.97438 * 18 17 16 21 21 N 1.31611 * 120.00378 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99657 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47214 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46895 * 120.00354 * 22 20 18 25 25 H 1.48496 * 109.47294 * 240.00194 * 22 20 18 26 26 C 1.39733 * 119.82631 * 359.70742 * 7 6 5 27 27 C 1.37699 * 119.91227 * 359.97438 * 26 7 6 28 28 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 29 29 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 31 31 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 32 32 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 33 33 H 1.08001 * 119.95341 * 359.97438 * 5 4 3 34 34 H 1.08000 * 120.04779 * 180.27730 * 6 5 4 35 35 H 0.96994 * 120.00292 * 359.97438 * 10 8 7 36 36 H 1.08998 * 109.46659 * 299.99886 * 11 10 8 37 37 H 1.08998 * 109.47108 * 59.99344 * 11 10 8 38 38 H 1.08999 * 109.47106 * 300.00056 * 12 11 10 39 39 H 1.08998 * 109.47323 * 59.99849 * 12 11 10 40 40 H 1.08999 * 109.47436 * 300.00090 * 13 12 11 41 41 H 1.08999 * 109.47497 * 60.00126 * 13 12 11 42 42 H 1.08999 * 109.46982 * 300.00372 * 14 13 12 43 43 H 1.08999 * 109.46769 * 59.99683 * 14 13 12 44 44 H 1.08999 * 109.47268 * 300.00194 * 15 14 13 45 45 H 1.08999 * 109.47334 * 60.00027 * 15 14 13 46 46 H 1.08998 * 109.47528 * 299.99960 * 16 15 14 47 47 H 1.09006 * 109.47177 * 60.00362 * 16 15 14 48 48 H 0.97005 * 119.99738 * 0.02562 * 17 16 15 49 49 H 0.97001 * 120.00248 * 179.97438 * 21 20 18 50 50 H 1.08004 * 120.04496 * 179.97438 * 26 7 6 51 51 H 1.07996 * 119.95600 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3517 1.5252 -0.0005 5 6 4.1967 0.4217 0.0047 6 6 5.5624 0.5979 -0.0015 7 6 6.0983 1.8884 -0.0011 8 6 7.5616 2.0819 -0.0007 9 8 8.0263 3.2054 0.0001 10 7 8.3827 1.0130 -0.0012 11 6 9.8351 1.2051 -0.0002 12 6 10.5297 -0.1581 -0.0004 13 6 12.0465 0.0425 0.0000 14 6 12.7413 -1.3207 0.0005 15 6 14.2580 -1.1202 0.0015 16 6 14.9527 -2.4834 0.0013 17 7 16.4051 -2.2914 0.0017 18 6 17.2393 -3.3773 0.0021 19 1 16.8265 -4.3754 0.0018 20 6 18.6154 -3.1953 0.0019 21 7 19.1185 -1.9791 0.0018 22 14 19.7534 -4.6767 0.0018 23 1 18.9446 -5.9222 0.0014 24 1 20.6100 -4.6428 -1.2107 25 1 20.6102 -4.6429 1.2142 26 6 5.2454 2.9952 -0.0006 27 6 3.8808 2.8105 -0.0011 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 3.7816 -0.5753 0.0096 34 1 6.2184 -0.2600 -0.0019 35 1 8.0120 0.1167 -0.0014 36 1 10.1283 1.7628 -0.8895 37 1 10.1274 1.7614 0.8904 38 1 10.2363 -0.7155 0.8892 39 1 10.2375 -0.7148 -0.8907 40 1 12.3396 0.5997 -0.8897 41 1 12.3392 0.5993 0.8902 42 1 12.4481 -1.8776 0.8904 43 1 12.4486 -1.8779 -0.8895 44 1 14.5515 -0.5632 -0.8882 45 1 14.5503 -0.5632 0.8917 46 1 14.6593 -3.0409 0.8908 47 1 14.6604 -3.0400 -0.8892 48 1 16.7758 -1.3950 0.0024 49 1 20.0801 -1.8520 0.0021 50 1 5.6558 3.9942 0.0001 51 1 3.2210 3.6655 -0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180184135.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:48 Heat of formation + Delta-G solvation = -67.875663 kcal Electronic energy + Delta-G solvation = -26151.048777 eV Core-core repulsion = 22242.910739 eV Total energy + Delta-G solvation = -3908.138038 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.95473 -39.88757 -37.72587 -36.78287 -35.42605 -34.00734 -32.73971 -31.96632 -31.48272 -30.58598 -29.63971 -26.96227 -24.87719 -24.25929 -23.61419 -22.51046 -21.97714 -21.31856 -20.65125 -20.52545 -19.04472 -17.95361 -16.96657 -16.81385 -16.76581 -16.24618 -15.79167 -15.41953 -15.29372 -14.68848 -14.53321 -14.34741 -14.23309 -13.91029 -13.90247 -13.47248 -13.40544 -13.30275 -12.99177 -12.87279 -12.69833 -12.45416 -12.35377 -12.30963 -11.72379 -11.40990 -11.35627 -11.32558 -11.19066 -10.91829 -10.73608 -10.71639 -10.43947 -10.25103 -10.21773 -9.92748 -9.64635 -9.63380 -9.41986 -8.83979 -8.78437 -6.87675 -5.73191 -3.01542 0.41593 0.77200 2.47803 2.52046 2.82655 3.39275 3.45193 3.50352 3.52995 4.07455 4.22940 4.26492 4.35570 4.36952 4.54793 4.57727 4.64307 4.66419 4.75670 4.78765 4.91268 4.97811 5.14130 5.14469 5.24183 5.34582 5.38758 5.40109 5.41314 5.57042 5.57222 5.64796 5.67836 5.70727 5.73993 5.85464 5.94942 5.97095 6.07312 6.14417 6.15383 6.34952 6.35610 6.42839 6.49851 6.75376 6.93079 6.97088 7.15297 7.73250 7.89341 8.46198 9.56925 10.16680 10.51187 11.50083 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.027439 B = 0.001178 C = 0.001132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.208564 B =23758.762778 C =24726.712176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.312 6.312 4 C 0.156 3.844 5 C -0.218 4.218 6 C -0.043 4.043 7 C -0.175 4.175 8 C 0.560 3.440 9 O -0.539 6.539 10 N -0.727 5.727 11 C 0.117 3.883 12 C -0.131 4.131 13 C -0.116 4.116 14 C -0.113 4.113 15 C -0.127 4.127 16 C 0.152 3.848 17 N -0.735 5.735 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.018 4.018 27 C -0.161 4.161 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.399 0.601 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.016 0.984 47 H 0.016 0.984 48 H 0.383 0.617 49 H 0.254 0.746 50 H 0.144 0.856 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -40.984 6.229 -0.004 41.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.226 6.226 4 C 0.110 3.890 5 C -0.237 4.237 6 C -0.062 4.062 7 C -0.178 4.178 8 C 0.348 3.652 9 O -0.417 6.417 10 N -0.379 5.379 11 C -0.006 4.006 12 C -0.169 4.169 13 C -0.154 4.154 14 C -0.151 4.151 15 C -0.165 4.165 16 C 0.025 3.975 17 N -0.379 5.379 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.037 4.037 27 C -0.180 4.180 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.234 0.766 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.217 0.783 49 H 0.064 0.936 50 H 0.162 0.838 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -40.734 6.986 -0.005 41.328 hybrid contribution 0.747 -1.298 0.000 1.498 sum -39.987 5.688 -0.004 40.390 Atomic orbital electron populations 1.21791 0.92412 1.03134 1.03703 1.22885 0.96199 0.81505 1.01747 1.86063 1.18884 1.29915 1.87706 1.19283 0.82426 0.94186 0.93123 1.21181 0.94003 0.98423 1.10076 1.21089 0.94706 0.96107 0.94305 1.19855 0.93145 0.94151 1.10690 1.18158 0.86177 0.84661 0.76225 1.90794 1.77476 1.23569 1.49861 1.45957 1.07282 1.09019 1.75672 1.21478 0.78189 0.98125 1.02793 1.21832 0.96484 0.95848 1.02727 1.21518 0.92756 0.98472 1.02699 1.21498 0.95550 0.96202 1.01873 1.21729 0.93740 0.98988 1.02026 1.20658 0.85483 0.93898 0.97510 1.42409 0.99448 1.06642 1.89444 1.19306 0.87853 0.87508 1.42313 0.91177 1.24745 0.96746 0.96471 1.03177 1.69671 1.11357 1.19264 1.58048 0.86117 0.81001 0.81910 0.77193 1.20561 1.21865 1.21860 1.21108 0.91475 0.99265 0.91866 1.20444 0.95053 0.95043 1.07431 0.91379 0.90125 0.91384 0.91662 0.91665 0.84789 0.85265 0.76633 0.91163 0.91173 0.91279 0.91283 0.91574 0.91582 0.92115 0.92112 0.92074 0.92070 0.96601 0.96602 0.78333 0.93584 0.83796 0.84367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.38 10.28 37.16 0.38 0.00 16 2 C 0.05 0.19 5.45 37.16 0.20 0.39 16 3 O -0.31 -2.09 10.12 -18.84 -0.19 -2.28 16 4 C 0.16 1.10 6.70 -39.02 -0.26 0.84 16 5 C -0.22 -1.27 9.01 -39.50 -0.36 -1.63 16 6 C -0.04 -0.27 9.53 -39.22 -0.37 -0.64 16 7 C -0.18 -1.48 5.87 -104.96 -0.62 -2.10 16 8 C 0.56 5.89 7.76 -12.44 -0.10 5.79 16 9 O -0.54 -7.71 16.34 5.29 0.09 -7.62 16 10 N -0.73 -5.91 5.51 -61.33 -0.34 -6.25 16 11 C 0.12 1.04 5.67 -4.04 -0.02 1.02 16 12 C -0.13 -1.03 5.33 -26.73 -0.14 -1.17 16 13 C -0.12 -1.17 5.21 -26.73 -0.14 -1.31 16 14 C -0.11 -1.38 5.21 -26.73 -0.14 -1.52 16 15 C -0.13 -2.07 5.33 -26.74 -0.14 -2.21 16 16 C 0.15 3.16 6.26 -4.04 -0.03 3.13 16 17 N -0.74 -19.46 5.60 -59.90 -0.34 -19.79 16 18 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 19 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 20 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 21 N -0.93 -28.96 13.06 55.49 0.72 -28.23 16 22 Si 0.91 22.78 29.55 -169.99 -5.02 17.75 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 26 C -0.02 -0.15 9.58 -39.22 -0.38 -0.53 16 27 C -0.16 -1.16 9.97 -39.50 -0.39 -1.55 16 28 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.08 0.08 8.14 -51.93 -0.42 -0.35 16 30 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.18 7.66 -51.93 -0.40 -0.22 16 32 H 0.07 0.18 7.64 -51.93 -0.40 -0.22 16 33 H 0.13 0.48 6.28 -52.49 -0.33 0.15 16 34 H 0.13 0.46 6.39 -52.49 -0.34 0.12 16 35 H 0.40 2.11 6.49 -40.82 -0.27 1.84 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.38 10.60 7.67 -40.82 -0.31 10.29 16 49 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 50 H 0.14 1.16 7.64 -52.48 -0.40 0.76 16 51 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 420.29 15.07 6.33 6.33 Total: -1.00 -35.32 420.29 -10.24 -45.56 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -8.75 Total: 3.62 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -2.75 Total: -9.10 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.05 Total: -54.27 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.10 Total: -9.90 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -35.32 -10.24 -45.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180184135.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.318 kcal (2) G-P(sol) polarization free energy of solvation -35.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds