Wall clock time and date at job start Tue Mar 31 2020 19:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35713 * 116.99825 * 180.02562 * 3 2 1 5 5 C 1.38993 * 119.91220 * 359.72534 * 4 3 2 6 6 C 1.37700 * 120.08866 * 179.72768 * 5 4 3 7 7 C 1.39735 * 119.90695 * 0.56527 * 6 5 4 8 8 C 1.47602 * 120.08496 * 179.68393 * 7 6 5 9 9 O 1.21584 * 120.00051 * 180.02562 * 8 7 6 10 10 N 1.34775 * 119.99972 * 0.02564 * 8 7 6 11 11 C 1.46506 * 119.99938 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47195 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.46987 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.47242 * 179.97438 * 13 12 11 15 15 C 1.52992 * 109.47573 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.47319 * 180.02562 * 15 14 13 17 17 N 1.46506 * 109.47199 * 179.97438 * 16 15 14 18 18 C 1.36936 * 120.00063 * 179.97438 * 17 16 15 19 19 H 1.08003 * 120.00007 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99797 * 179.97438 * 18 17 16 21 21 N 1.31611 * 120.00378 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99657 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47214 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46895 * 120.00354 * 22 20 18 25 25 H 1.48496 * 109.47294 * 240.00194 * 22 20 18 26 26 C 1.39733 * 119.82631 * 359.70742 * 7 6 5 27 27 C 1.37699 * 119.91227 * 359.97438 * 26 7 6 28 28 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 29 29 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 31 31 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 32 32 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 33 33 H 1.08001 * 119.95341 * 359.97438 * 5 4 3 34 34 H 1.08000 * 120.04779 * 180.27730 * 6 5 4 35 35 H 0.96994 * 120.00292 * 359.97438 * 10 8 7 36 36 H 1.08998 * 109.46659 * 299.99886 * 11 10 8 37 37 H 1.08998 * 109.47108 * 59.99344 * 11 10 8 38 38 H 1.08999 * 109.47106 * 300.00056 * 12 11 10 39 39 H 1.08998 * 109.47323 * 59.99849 * 12 11 10 40 40 H 1.08999 * 109.47436 * 300.00090 * 13 12 11 41 41 H 1.08999 * 109.47497 * 60.00126 * 13 12 11 42 42 H 1.08999 * 109.46982 * 300.00372 * 14 13 12 43 43 H 1.08999 * 109.46769 * 59.99683 * 14 13 12 44 44 H 1.08999 * 109.47268 * 300.00194 * 15 14 13 45 45 H 1.08999 * 109.47334 * 60.00027 * 15 14 13 46 46 H 1.08998 * 109.47528 * 299.99960 * 16 15 14 47 47 H 1.09006 * 109.47177 * 60.00362 * 16 15 14 48 48 H 0.97005 * 119.99738 * 0.02562 * 17 16 15 49 49 H 0.97001 * 120.00248 * 179.97438 * 21 20 18 50 50 H 1.08004 * 120.04496 * 179.97438 * 26 7 6 51 51 H 1.07996 * 119.95600 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3517 1.5252 -0.0005 5 6 4.1967 0.4217 0.0047 6 6 5.5624 0.5979 -0.0015 7 6 6.0983 1.8884 -0.0011 8 6 7.5616 2.0819 -0.0007 9 8 8.0263 3.2054 0.0001 10 7 8.3827 1.0130 -0.0012 11 6 9.8351 1.2051 -0.0002 12 6 10.5297 -0.1581 -0.0004 13 6 12.0465 0.0425 0.0000 14 6 12.7413 -1.3207 0.0005 15 6 14.2580 -1.1202 0.0015 16 6 14.9527 -2.4834 0.0013 17 7 16.4051 -2.2914 0.0017 18 6 17.2393 -3.3773 0.0021 19 1 16.8265 -4.3754 0.0018 20 6 18.6154 -3.1953 0.0019 21 7 19.1185 -1.9791 0.0018 22 14 19.7534 -4.6767 0.0018 23 1 18.9446 -5.9222 0.0014 24 1 20.6100 -4.6428 -1.2107 25 1 20.6102 -4.6429 1.2142 26 6 5.2454 2.9952 -0.0006 27 6 3.8808 2.8105 -0.0011 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 3.7816 -0.5753 0.0096 34 1 6.2184 -0.2600 -0.0019 35 1 8.0120 0.1167 -0.0014 36 1 10.1283 1.7628 -0.8895 37 1 10.1274 1.7614 0.8904 38 1 10.2363 -0.7155 0.8892 39 1 10.2375 -0.7148 -0.8907 40 1 12.3396 0.5997 -0.8897 41 1 12.3392 0.5993 0.8902 42 1 12.4481 -1.8776 0.8904 43 1 12.4486 -1.8779 -0.8895 44 1 14.5515 -0.5632 -0.8882 45 1 14.5503 -0.5632 0.8917 46 1 14.6593 -3.0409 0.8908 47 1 14.6604 -3.0400 -0.8892 48 1 16.7758 -1.3950 0.0024 49 1 20.0801 -1.8520 0.0021 50 1 5.6558 3.9942 0.0001 51 1 3.2210 3.6655 -0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180184135.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:47 Heat of formation + Delta-G solvation = -89.984961 kcal Electronic energy + Delta-G solvation = -26152.007508 eV Core-core repulsion = 22242.910739 eV Total energy + Delta-G solvation = -3909.096769 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.51070 -40.53846 -38.28055 -37.84127 -36.75823 -35.35997 -33.63948 -32.96110 -32.03066 -31.68428 -30.61013 -28.23129 -25.96602 -25.03328 -24.47011 -23.61298 -22.61005 -22.21841 -21.96808 -21.26264 -19.51771 -19.11952 -18.55500 -17.44039 -17.11944 -17.04477 -16.68538 -16.39025 -16.28912 -15.95410 -15.38395 -15.35664 -15.29365 -15.08462 -14.66588 -14.36721 -14.34976 -14.04838 -13.89589 -13.73573 -13.41156 -13.21444 -13.03795 -13.00709 -12.88124 -12.66051 -12.65092 -12.38222 -12.11901 -12.00822 -11.80733 -11.79926 -11.77936 -11.67138 -11.48774 -11.33275 -11.03310 -10.94431 -10.18885 -10.14867 -9.30521 -9.01436 -7.96494 -5.26058 -0.16561 0.27715 1.46908 1.48371 1.58655 1.79137 2.10652 2.17392 2.55721 2.79955 3.37345 3.65027 3.71034 3.74695 3.82893 4.02674 4.02864 4.06977 4.09947 4.18580 4.25790 4.29019 4.35116 4.36431 4.38657 4.50941 4.60443 4.64816 4.78862 4.83122 4.86643 4.92152 4.94984 4.98666 4.99256 5.06240 5.07810 5.15373 5.16777 5.27361 5.29835 5.31751 5.34786 5.42312 5.48424 5.54745 5.57646 5.60908 6.26460 6.33388 6.50869 7.17696 7.31790 8.08994 8.31707 9.27724 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.027439 B = 0.001178 C = 0.001132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.208564 B =23758.762778 C =24726.712176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.042 3.958 3 O -0.327 6.327 4 C 0.152 3.848 5 C -0.215 4.215 6 C -0.035 4.035 7 C -0.194 4.194 8 C 0.556 3.444 9 O -0.588 6.588 10 N -0.713 5.713 11 C 0.119 3.881 12 C -0.117 4.117 13 C -0.114 4.114 14 C -0.103 4.103 15 C -0.118 4.118 16 C 0.148 3.852 17 N -0.752 5.752 18 C -0.249 4.249 19 H 0.076 0.924 20 C -0.077 4.077 21 N -0.972 5.972 22 Si 0.976 3.024 23 H -0.264 1.264 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.031 4.031 27 C -0.171 4.171 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.415 0.585 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.020 0.980 47 H 0.020 0.980 48 H 0.372 0.628 49 H 0.252 0.748 50 H 0.133 0.867 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -42.867 3.518 -0.003 43.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.032 4.032 3 O -0.241 6.241 4 C 0.105 3.895 5 C -0.234 4.234 6 C -0.053 4.053 7 C -0.197 4.197 8 C 0.345 3.655 9 O -0.470 6.470 10 N -0.365 5.365 11 C -0.004 4.004 12 C -0.155 4.155 13 C -0.152 4.152 14 C -0.141 4.141 15 C -0.156 4.156 16 C 0.022 3.978 17 N -0.394 5.394 18 C -0.381 4.381 19 H 0.094 0.906 20 C -0.269 4.269 21 N -0.623 5.623 22 Si 0.805 3.195 23 H -0.188 1.188 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.050 4.050 27 C -0.189 4.189 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.180 0.820 34 H 0.177 0.823 35 H 0.253 0.747 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.038 0.962 47 H 0.038 0.962 48 H 0.204 0.796 49 H 0.061 0.939 50 H 0.151 0.849 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -42.675 4.212 -0.003 42.883 hybrid contribution 1.211 -0.477 0.000 1.302 sum -41.464 3.735 -0.003 41.632 Atomic orbital electron populations 1.21825 0.91782 1.04207 1.03148 1.23171 0.96788 0.80332 1.02925 1.86058 1.18620 1.31933 1.87494 1.19451 0.82975 0.94424 0.92648 1.21484 0.93665 0.99304 1.08904 1.21366 0.95364 0.95829 0.92767 1.19809 0.91868 0.95410 1.12641 1.18531 0.87206 0.84325 0.75389 1.90764 1.78383 1.25473 1.52372 1.45816 1.06796 1.09417 1.74482 1.21384 0.78726 0.98655 1.01657 1.21696 0.94437 0.95200 1.04157 1.21453 0.94237 0.97096 1.02431 1.21413 0.92295 0.97604 1.02798 1.21645 0.96409 0.96154 1.01357 1.20884 0.82874 0.96578 0.97489 1.42688 1.01694 1.05598 1.89456 1.19736 0.88644 0.88456 1.41280 0.90562 1.25627 0.98398 0.99348 1.03556 1.69831 1.11404 1.21491 1.59567 0.85031 0.78695 0.79013 0.76771 1.18843 1.21876 1.21865 1.21106 0.92083 0.99087 0.92682 1.20537 0.94726 0.95938 1.07723 0.91945 0.88221 0.91949 0.90419 0.90416 0.82038 0.82327 0.74698 0.92426 0.92434 0.89807 0.89813 0.91968 0.91977 0.91164 0.91161 0.92789 0.92780 0.96237 0.96242 0.79610 0.93929 0.84872 0.83696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 10.28 71.98 0.74 0.24 16 2 C 0.04 0.21 5.45 71.98 0.39 0.61 16 3 O -0.33 -3.93 10.12 -90.34 -0.91 -4.85 16 4 C 0.15 1.94 6.70 22.63 0.15 2.09 16 5 C -0.22 -1.95 9.01 22.32 0.20 -1.74 16 6 C -0.03 -0.34 9.53 22.50 0.21 -0.13 16 7 C -0.19 -3.20 5.87 -20.08 -0.12 -3.32 16 8 C 0.56 11.70 7.76 86.72 0.67 12.37 16 9 O -0.59 -17.65 16.34 -3.98 -0.07 -17.71 16 10 N -0.71 -10.56 5.51 -466.20 -2.57 -13.13 16 11 C 0.12 2.00 5.67 86.38 0.49 2.49 16 12 C -0.12 -1.53 5.33 30.59 0.16 -1.37 16 13 C -0.11 -2.09 5.21 30.59 0.16 -1.93 16 14 C -0.10 -2.28 5.21 30.59 0.16 -2.12 16 15 C -0.12 -3.74 5.33 30.59 0.16 -3.58 16 16 C 0.15 6.03 6.26 86.38 0.54 6.57 16 17 N -0.75 -39.93 5.60 -343.44 -1.92 -41.85 16 18 C -0.25 -14.39 9.99 84.03 0.84 -13.55 16 19 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 20 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 21 N -0.97 -60.95 13.06 21.65 0.28 -60.67 16 22 Si 0.98 46.70 29.55 68.60 2.03 48.72 16 23 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 26 C -0.03 -0.52 9.58 22.50 0.22 -0.31 16 27 C -0.17 -2.47 9.97 22.32 0.22 -2.25 16 28 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.08 0.21 7.66 -2.39 -0.02 0.19 16 32 H 0.08 0.21 7.64 -2.39 -0.02 0.19 16 33 H 0.16 0.52 6.28 -2.91 -0.02 0.50 16 34 H 0.16 0.51 6.39 -2.91 -0.02 0.49 16 35 H 0.41 3.19 6.49 -92.71 -0.60 2.58 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 39 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 48 H 0.37 20.99 7.67 -92.70 -0.71 20.28 16 49 H 0.25 15.19 8.31 -92.71 -0.77 14.41 16 50 H 0.13 2.44 7.64 -2.91 -0.02 2.42 16 51 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -77.34 420.29 2.12 -75.22 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: -0.40 Total: 24.26 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 5.68 Total: -9.99 kcal Atomic # 7 Polarization: -111.44 SS G_CDS: -4.21 Total: -115.65 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.98 Total: -22.56 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.72 kcal Total: -77.34 2.12 -75.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180184135.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.764 kcal (2) G-P(sol) polarization free energy of solvation -77.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds