Wall clock time and date at job start Tue Mar 31 2020 17:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47064 * 2 1 4 4 O 1.42901 * 109.47125 * 120.00187 * 2 1 3 5 5 C 1.35896 * 116.99626 * 275.06404 * 4 2 1 6 6 C 1.38732 * 120.05912 * 5.46119 * 5 4 2 7 7 C 1.38140 * 119.94457 * 179.97438 * 6 5 4 8 8 C 1.38262 * 120.05813 * 359.97438 * 7 6 5 9 9 C 1.38264 * 120.10988 * 0.27897 * 8 7 6 10 10 C 1.38139 * 120.05778 * 359.44557 * 9 8 7 11 11 C 1.50707 * 109.46885 * 239.99952 * 2 1 3 12 12 O 1.21286 * 119.99446 * 244.99781 * 11 2 1 13 13 N 1.34775 * 120.00194 * 65.00172 * 11 2 1 14 14 C 1.46495 * 120.00193 * 179.97438 * 13 11 2 15 15 C 1.52994 * 109.47428 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47368 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.46921 * 180.02562 * 16 15 14 18 18 C 1.53001 * 109.46921 * 179.97438 * 17 16 15 19 19 C 1.53004 * 109.47228 * 179.97438 * 18 17 16 20 20 N 1.46495 * 109.46904 * 179.97438 * 19 18 17 21 21 C 1.36937 * 119.99861 * 179.97438 * 20 19 18 22 22 H 1.08000 * 119.99785 * 0.02562 * 21 20 19 23 23 C 1.38814 * 120.00489 * 179.97438 * 21 20 19 24 24 N 1.31612 * 120.00256 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 119.99658 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47559 * 89.99270 * 25 23 21 27 27 H 1.48498 * 109.47094 * 209.99577 * 25 23 21 28 28 H 1.48507 * 109.46859 * 329.99529 * 25 23 21 29 29 H 1.08998 * 109.47113 * 300.00010 * 1 2 3 30 30 H 1.08993 * 109.47301 * 60.00207 * 1 2 3 31 31 H 1.09007 * 109.46734 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.02702 * 359.97438 * 6 5 4 33 33 H 1.08010 * 119.97071 * 180.02562 * 7 6 5 34 34 H 1.08003 * 119.94582 * 179.97438 * 8 7 6 35 35 H 1.08008 * 119.96784 * 179.70374 * 9 8 7 36 36 H 1.07996 * 120.03583 * 180.28026 * 10 9 8 37 37 H 0.96997 * 119.99688 * 359.97438 * 13 11 2 38 38 H 1.08998 * 109.46932 * 300.00005 * 14 13 11 39 39 H 1.09004 * 109.47137 * 60.00043 * 14 13 11 40 40 H 1.09008 * 109.46935 * 299.99906 * 15 14 13 41 41 H 1.08998 * 109.46977 * 59.99482 * 15 14 13 42 42 H 1.08998 * 109.46760 * 299.99918 * 16 15 14 43 43 H 1.08998 * 109.46967 * 59.99828 * 16 15 14 44 44 H 1.08998 * 109.47153 * 299.99452 * 17 16 15 45 45 H 1.08998 * 109.47624 * 60.00005 * 17 16 15 46 46 H 1.08998 * 109.46760 * 299.99693 * 18 17 16 47 47 H 1.09004 * 109.47369 * 59.99768 * 18 17 16 48 48 H 1.08998 * 109.47127 * 299.99625 * 19 18 17 49 49 H 1.09004 * 109.47007 * 59.99703 * 19 18 17 50 50 H 0.96994 * 120.00335 * 0.02562 * 20 19 18 51 51 H 0.97003 * 120.00094 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.1112 0.0622 2.3044 6 6 1.6574 1.3730 2.3284 7 6 1.7646 2.1187 3.4863 8 6 2.3233 1.5598 4.6208 9 6 2.7811 0.2553 4.5979 10 6 2.6710 -0.4965 3.4443 11 6 2.0323 -0.7105 -1.2305 12 8 2.6530 -1.7468 -1.1214 13 7 1.7919 -0.1943 -2.4521 14 6 2.2807 -0.8846 -3.6482 15 6 1.8753 -0.0949 -4.8943 16 6 2.3852 -0.8162 -6.1435 17 6 1.9803 -0.0260 -7.3896 18 6 2.4908 -0.7470 -8.6388 19 6 2.0854 0.0428 -9.8849 20 7 2.5747 -0.6473 -11.0810 21 6 2.3296 -0.1233 -12.3222 22 1 1.7760 0.7989 -12.4193 23 6 2.7937 -0.7768 -13.4555 24 7 2.5577 -0.2734 -14.6485 25 14 3.7519 -2.3715 -13.2875 26 1 2.8107 -3.5198 -13.3138 27 1 4.7124 -2.4928 -14.4136 28 1 4.4946 -2.3695 -12.0015 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 1.2205 1.8100 1.4426 33 1 1.4110 3.1391 3.5056 34 1 2.4066 2.1446 5.5249 35 1 3.2215 -0.1775 5.4841 36 1 3.0246 -1.5168 3.4282 37 1 1.2953 0.6343 -2.5392 38 1 3.3670 -0.9624 -3.6043 39 1 1.8464 -1.8833 -3.6942 40 1 0.7888 -0.0175 -4.9379 41 1 2.3091 0.9040 -4.8484 42 1 3.4715 -0.8939 -6.1001 43 1 1.9509 -1.8149 -6.1891 44 1 0.8940 0.0521 -7.4332 45 1 2.4149 0.9725 -7.3438 46 1 3.5771 -0.8247 -8.5949 47 1 2.0566 -1.7458 -8.6849 48 1 0.9990 0.1202 -9.9286 49 1 2.5193 1.0417 -9.8391 50 1 3.0716 -1.4757 -10.9938 51 1 2.8816 -0.7303 -15.4405 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180197179.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:51 Heat of formation + Delta-G solvation = -56.941393 kcal Electronic energy + Delta-G solvation = -26549.044292 eV Core-core repulsion = 22641.380399 eV Total energy + Delta-G solvation = -3907.663893 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.13772 -39.81665 -37.86312 -36.91339 -35.59436 -34.20456 -32.94363 -31.84898 -31.29999 -30.37428 -30.05897 -27.37469 -25.37809 -24.07899 -23.24897 -22.59224 -22.06232 -21.29857 -20.87224 -20.46904 -18.96014 -17.87818 -17.46217 -16.78066 -16.50863 -16.21974 -16.05618 -15.72728 -15.21271 -14.98917 -14.61831 -14.47708 -14.25855 -13.97622 -13.89302 -13.69174 -13.31255 -13.27316 -12.98540 -12.93228 -12.72618 -12.45307 -12.41662 -12.08131 -11.87287 -11.66090 -11.63198 -11.49541 -11.32959 -11.04126 -10.88210 -10.80752 -10.42228 -10.38976 -10.17120 -10.06251 -9.57307 -9.55529 -9.52117 -8.87402 -8.72141 -7.20805 -5.75490 -3.10588 0.81304 0.92588 2.07019 2.09219 3.05956 3.27780 3.38845 3.41953 3.46392 3.96571 4.12038 4.25642 4.33038 4.37002 4.43453 4.60827 4.61995 4.64256 4.77442 4.81992 4.86522 4.94679 5.02111 5.11618 5.13925 5.21799 5.27516 5.41009 5.46344 5.48991 5.51195 5.56486 5.60479 5.75730 5.77800 5.83426 5.88489 5.94326 5.99527 6.02849 6.10677 6.19648 6.22507 6.22884 6.36477 6.78446 6.81046 6.82628 6.98145 7.69568 8.01602 8.43971 9.23653 9.96269 10.16565 11.43125 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.038527 B = 0.001212 C = 0.001194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.591330 B =23089.469136 C =23435.596474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.067 3.933 3 H 0.099 0.901 4 O -0.285 6.285 5 C 0.130 3.870 6 C -0.213 4.213 7 C -0.080 4.080 8 C -0.159 4.159 9 C -0.080 4.080 10 C -0.149 4.149 11 C 0.516 3.484 12 O -0.514 6.514 13 N -0.725 5.725 14 C 0.118 3.882 15 C -0.131 4.131 16 C -0.117 4.117 17 C -0.113 4.113 18 C -0.131 4.131 19 C 0.156 3.844 20 N -0.759 5.759 21 C -0.245 4.245 22 H 0.089 0.911 23 C 0.003 3.997 24 N -0.936 5.936 25 Si 0.885 3.115 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.277 1.277 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.401 0.599 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.025 0.975 49 H 0.024 0.976 50 H 0.360 0.640 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.089 4.920 42.215 42.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.007 3.993 3 H 0.117 0.883 4 O -0.197 6.197 5 C 0.084 3.916 6 C -0.232 4.232 7 C -0.098 4.098 8 C -0.178 4.178 9 C -0.098 4.098 10 C -0.168 4.168 11 C 0.300 3.700 12 O -0.388 6.388 13 N -0.379 5.379 14 C -0.005 4.005 15 C -0.169 4.169 16 C -0.155 4.155 17 C -0.151 4.151 18 C -0.169 4.169 19 C 0.029 3.971 20 N -0.404 5.404 21 C -0.375 4.375 22 H 0.107 0.893 23 C -0.192 4.192 24 N -0.584 5.584 25 Si 0.716 3.284 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.203 1.203 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.236 0.764 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.043 0.957 49 H 0.042 0.958 50 H 0.193 0.807 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.662 4.090 42.069 42.425 hybrid contribution 0.361 -0.468 -0.200 0.624 sum -3.301 3.623 41.869 42.154 Atomic orbital electron populations 1.22347 0.92358 1.04688 1.04013 1.22195 0.95905 0.97011 0.84226 0.88320 1.86223 1.80960 1.36885 1.15672 1.19092 0.95452 0.90372 0.86638 1.21309 1.07243 0.94339 1.00308 1.20973 0.97113 0.99458 0.92252 1.21107 1.01934 0.95923 0.98800 1.21015 0.97603 0.93996 0.97150 1.20512 1.03490 1.01543 0.91244 1.20062 0.80196 0.85632 0.84108 1.90772 1.38908 1.22826 1.86312 1.45903 1.58370 1.28122 1.05518 1.21499 0.99921 0.96399 0.82652 1.21831 1.01861 0.99697 0.93470 1.21521 1.01371 0.99451 0.93146 1.21488 1.01105 0.99135 0.93405 1.21786 1.00976 0.99669 0.94463 1.20635 0.96776 0.94593 0.85088 1.42745 1.67418 1.27672 1.02580 1.19093 1.29641 1.06821 0.81923 0.89271 1.24676 1.00807 0.98675 0.95077 1.69703 1.51193 1.40577 0.96909 0.86526 0.80194 0.84798 0.76907 1.21065 1.21695 1.20336 0.90412 0.90119 0.90472 0.85279 0.85671 0.85822 0.85221 0.84975 0.76433 0.91130 0.91101 0.91116 0.91134 0.91609 0.91587 0.91873 0.91889 0.92129 0.92119 0.95713 0.95773 0.80714 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.79 9.12 37.16 0.34 -0.45 16 2 C 0.07 0.45 2.64 -27.88 -0.07 0.38 16 3 H 0.10 0.44 6.31 -51.93 -0.33 0.11 16 4 O -0.28 -2.79 9.34 -39.27 -0.37 -3.16 16 5 C 0.13 1.08 6.60 -39.21 -0.26 0.82 16 6 C -0.21 -1.33 8.24 -39.43 -0.33 -1.66 16 7 C -0.08 -0.44 10.04 -39.61 -0.40 -0.83 16 8 C -0.16 -0.87 10.04 -39.56 -0.40 -1.26 16 9 C -0.08 -0.47 10.04 -39.61 -0.40 -0.87 16 10 C -0.15 -1.15 9.99 -39.43 -0.39 -1.55 16 11 C 0.52 4.81 7.18 -10.98 -0.08 4.73 16 12 O -0.51 -7.32 16.51 -14.31 -0.24 -7.56 16 13 N -0.73 -4.71 5.52 -60.30 -0.33 -5.05 16 14 C 0.12 0.90 5.67 -4.05 -0.02 0.88 16 15 C -0.13 -0.86 5.33 -26.73 -0.14 -1.01 16 16 C -0.12 -1.03 5.21 -26.73 -0.14 -1.17 16 17 C -0.11 -1.24 5.21 -26.73 -0.14 -1.38 16 18 C -0.13 -1.94 5.33 -26.73 -0.14 -2.08 16 19 C 0.16 3.04 6.26 -4.04 -0.03 3.02 16 20 N -0.76 -18.62 5.41 -59.91 -0.32 -18.95 16 21 C -0.24 -7.13 10.47 -15.06 -0.16 -7.29 16 22 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 23 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 24 N -0.94 -29.83 13.97 55.49 0.78 -29.06 16 25 Si 0.89 22.48 27.74 -169.99 -4.71 17.76 16 26 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 28 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 29 H 0.08 0.30 6.91 -51.93 -0.36 -0.06 16 30 H 0.08 0.18 7.92 -51.93 -0.41 -0.23 16 31 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.13 0.53 5.43 -52.48 -0.28 0.25 16 33 H 0.13 0.41 8.06 -52.48 -0.42 -0.02 16 34 H 0.12 0.42 8.06 -52.48 -0.42 0.00 16 35 H 0.13 0.48 8.06 -52.48 -0.42 0.06 16 36 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 37 H 0.40 1.32 8.26 -40.82 -0.34 0.98 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 48 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.36 8.59 5.53 -40.82 -0.23 8.37 16 51 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 416.90 15.07 6.28 6.28 Total: -1.00 -36.83 416.90 -10.49 -47.32 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -8.72 Total: 2.13 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -2.85 Total: -9.72 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: 0.12 Total: -53.05 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -0.60 Total: -10.72 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.71 Total: 17.76 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -36.83 -10.49 -47.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180197179.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.625 kcal (2) G-P(sol) polarization free energy of solvation -36.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds