Wall clock time and date at job start Tue Mar 31 2020 17:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 O 1.42894 * 109.47514 * 18.53985 * 3 2 1 5 5 C 1.42899 * 114.00511 * 179.97438 * 4 3 2 6 6 H 1.09007 * 109.46659 * 30.00232 * 5 4 3 7 7 C 1.52998 * 109.47235 * 270.00646 * 5 4 3 8 8 C 1.50701 * 109.47273 * 149.99692 * 5 4 3 9 9 O 1.21279 * 120.00175 * 5.00987 * 8 5 4 10 10 N 1.34778 * 119.99806 * 184.99748 * 8 5 4 11 11 C 1.46925 * 120.62969 * 180.02562 * 10 8 5 12 12 C 1.53193 * 108.78011 * 233.59326 * 11 10 8 13 13 C 1.53041 * 109.30988 * 305.36800 * 12 11 10 14 14 C 1.53001 * 109.45752 * 181.38722 * 13 12 11 15 15 H 1.08989 * 110.00130 * 52.33762 * 14 13 12 16 16 C 1.54310 * 109.77463 * 173.50106 * 14 13 12 17 17 C 1.55150 * 102.86808 * 141.88027 * 16 14 13 18 18 C 1.54911 * 101.58222 * 324.30515 * 17 16 14 19 19 N 1.47027 * 109.87809 * 291.24138 * 14 13 12 20 20 C 1.36936 * 125.64421 * 61.68474 * 19 14 13 21 21 H 1.07998 * 120.00415 * 301.10121 * 20 19 14 22 22 C 1.38815 * 119.99843 * 121.10265 * 20 19 14 23 23 N 1.31622 * 119.99860 * 172.92513 * 22 20 19 24 24 Si 1.86799 * 120.00272 * 352.92127 * 22 20 19 25 25 H 1.48503 * 109.46853 * 88.80226 * 24 22 20 26 26 H 1.48498 * 109.47363 * 208.79812 * 24 22 20 27 27 H 1.48493 * 109.47115 * 328.80424 * 24 22 20 28 28 C 1.53037 * 109.53850 * 61.36279 * 13 12 11 29 29 C 1.46922 * 120.63255 * 359.97438 * 10 8 5 30 30 H 4.38444 * 5.44457 * 179.97438 * 4 1 2 31 31 H 1.09008 * 109.46783 * 258.53993 * 3 2 1 32 32 H 1.09000 * 109.47169 * 138.54464 * 3 2 1 33 33 H 1.08995 * 109.46698 * 299.99178 * 7 5 4 34 34 H 1.08998 * 109.47131 * 59.99648 * 7 5 4 35 35 H 1.09003 * 109.46719 * 179.97438 * 7 5 4 36 36 H 1.09001 * 109.58720 * 113.80208 * 11 10 8 37 37 H 1.09007 * 109.58379 * 353.38503 * 11 10 8 38 38 H 1.08997 * 109.49873 * 185.41482 * 12 11 10 39 39 H 1.08998 * 109.49468 * 65.31238 * 12 11 10 40 40 H 1.09005 * 109.45986 * 301.35444 * 13 12 11 41 41 H 1.09003 * 110.92722 * 23.46572 * 16 14 13 42 42 H 1.09002 * 110.58900 * 260.14088 * 16 14 13 43 43 H 1.08993 * 111.00834 * 206.22635 * 17 16 14 44 44 H 1.09008 * 111.03638 * 82.38914 * 17 16 14 45 45 H 1.08998 * 110.36039 * 278.16745 * 18 17 16 46 46 H 1.08998 * 110.46112 * 155.89651 * 18 17 16 47 47 H 0.97004 * 120.00145 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.49939 * 58.58618 * 28 13 12 49 49 H 1.08998 * 109.49705 * 178.68232 * 28 13 12 50 50 H 1.09005 * 109.58171 * 246.19553 * 29 10 8 51 51 H 1.09000 * 109.58637 * 6.61358 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1230 -1.2764 -0.4284 5 6 4.5476 -1.3826 -0.4648 6 1 4.9800 -0.7316 0.2952 7 6 5.0552 -0.9619 -1.8454 8 6 4.9522 -2.8087 -0.1938 9 8 4.1043 -3.6684 -0.0797 10 7 6.2563 -3.1289 -0.0784 11 6 6.6663 -4.5150 0.1852 12 6 7.5779 -4.5340 1.4162 13 6 8.7420 -3.5646 1.1989 14 6 9.6735 -3.6066 2.4120 15 1 9.9586 -4.6362 2.6276 16 6 10.9318 -2.7580 2.1336 17 6 11.2068 -2.0874 3.5054 18 6 9.7684 -1.8427 4.0259 19 7 9.0004 -3.0192 3.5797 20 6 7.8532 -3.4905 4.1603 21 1 6.9465 -3.5689 3.5789 22 6 7.8559 -3.8676 5.4962 23 7 6.7267 -4.1878 6.0919 24 14 9.4620 -3.9209 6.4486 25 1 9.7225 -2.5904 7.0545 26 1 9.3677 -4.9434 7.5214 27 1 10.5725 -4.2711 5.5271 28 6 8.1994 -2.1447 1.0215 29 6 7.2949 -2.0988 -0.2149 30 1 -1.0497 -0.0005 0.0000 31 1 3.0093 0.2050 1.0073 32 1 3.0090 0.7710 -0.6803 33 1 4.6229 -1.6128 -2.6053 34 1 4.7626 0.0697 -2.0413 35 1 6.1419 -1.0425 -1.8730 36 1 7.2075 -4.9061 -0.6764 37 1 5.7844 -5.1273 0.3740 38 1 7.9663 -5.5414 1.5658 39 1 7.0094 -4.2286 2.2946 40 1 9.2953 -3.8560 0.3060 41 1 10.7332 -2.0061 1.3698 42 1 11.7668 -3.3948 1.8414 43 1 11.7423 -1.1464 3.3801 44 1 11.7526 -2.7600 4.1673 45 1 9.3567 -0.9329 3.5890 46 1 9.7630 -1.7763 5.1138 47 1 6.7285 -4.4517 7.0253 48 1 7.6251 -1.8618 1.9036 49 1 9.0303 -1.4516 0.8901 50 1 7.8873 -2.2935 -1.1090 51 1 6.8280 -1.1168 -0.2901 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230569592.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:39 Heat of formation + Delta-G solvation = 8.489451 kcal Electronic energy + Delta-G solvation = -30643.131382 eV Core-core repulsion = 26738.304784 eV Total energy + Delta-G solvation = -3904.826598 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.33479 -38.80497 -37.77303 -36.23309 -33.71433 -32.88924 -32.65516 -31.48381 -30.34227 -29.86346 -28.00634 -27.25214 -25.10207 -24.37314 -23.13040 -22.92460 -20.83527 -20.33281 -19.42343 -18.90657 -18.36004 -17.23155 -17.00521 -16.60811 -15.95988 -15.75875 -15.50070 -14.80180 -14.63879 -14.59931 -13.90498 -13.83909 -13.50978 -13.47135 -13.15722 -13.09152 -12.77261 -12.54388 -12.42649 -12.31167 -12.21489 -11.81756 -11.62720 -11.44673 -11.26799 -11.09881 -10.96089 -10.85273 -10.75708 -10.67573 -10.57969 -10.44986 -10.20375 -9.97561 -9.86683 -9.79303 -9.58397 -9.32882 -9.21190 -8.52576 -8.32242 -6.38314 -5.94591 -3.75476 2.26774 2.67743 2.81626 3.10504 3.30716 3.42432 3.49973 3.86203 4.35041 4.49182 4.54590 4.73503 4.88623 5.00380 5.01387 5.04194 5.13271 5.24472 5.27074 5.35309 5.40760 5.41650 5.49565 5.53889 5.59117 5.62652 5.68774 5.75862 5.83556 5.89615 5.93164 6.02225 6.15925 6.16989 6.21039 6.34188 6.37060 6.38954 6.58944 6.64398 6.75822 6.83473 6.85771 6.90757 6.95081 7.05543 7.26541 7.43614 7.62387 8.11042 8.40928 8.53638 8.87356 9.61150 10.34223 11.10354 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012799 B = 0.003541 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.191193 B = 7905.690596 C = 8800.443437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.188 4.188 3 C 0.168 3.832 4 O -0.351 6.351 5 C 0.072 3.928 6 H 0.091 0.909 7 C -0.177 4.177 8 C 0.517 3.483 9 O -0.523 6.523 10 N -0.600 5.600 11 C 0.115 3.885 12 C -0.145 4.145 13 C -0.083 4.083 14 C 0.157 3.843 15 H 0.039 0.961 16 C -0.128 4.128 17 C -0.139 4.139 18 C 0.119 3.881 19 N -0.596 5.596 20 C -0.258 4.258 21 H 0.084 0.916 22 C 0.050 3.950 23 N -0.899 5.899 24 Si 0.892 3.108 25 H -0.286 1.286 26 H -0.303 1.303 27 H -0.265 1.265 28 C -0.122 4.122 29 C 0.101 3.899 30 H 0.222 0.778 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.115 0.885 40 H 0.051 0.949 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.025 0.975 46 H 0.039 0.961 47 H 0.265 0.735 48 H 0.087 0.913 49 H 0.065 0.935 50 H 0.064 0.936 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.853 9.469 -15.018 17.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.188 4.188 3 C 0.093 3.907 4 O -0.269 6.269 5 C 0.011 3.989 6 H 0.108 0.892 7 C -0.235 4.235 8 C 0.303 3.697 9 O -0.399 6.399 10 N -0.335 5.335 11 C -0.007 4.007 12 C -0.183 4.183 13 C -0.103 4.103 14 C 0.051 3.949 15 H 0.057 0.943 16 C -0.165 4.165 17 C -0.177 4.177 18 C -0.006 4.006 19 N -0.323 5.323 20 C -0.386 4.386 21 H 0.101 0.899 22 C -0.154 4.154 23 N -0.538 5.538 24 Si 0.722 3.278 25 H -0.213 1.213 26 H -0.230 1.230 27 H -0.190 1.190 28 C -0.160 4.160 29 C -0.022 4.022 30 H 0.238 0.762 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.133 0.867 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.043 0.957 46 H 0.057 0.943 47 H 0.075 0.925 48 H 0.105 0.895 49 H 0.083 0.917 50 H 0.082 0.918 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.093 8.748 -14.800 17.227 hybrid contribution 0.937 0.190 0.825 1.263 sum 2.030 8.937 -13.975 16.712 Atomic orbital electron populations 1.24934 0.95853 0.97896 1.00615 1.22447 0.93806 1.01902 1.00689 1.19195 0.85055 0.86435 1.00032 1.88106 1.19087 1.31920 1.87806 1.21901 0.82645 0.95573 0.98812 0.89151 1.22423 1.02411 1.02493 0.96167 1.20165 0.82432 0.89917 0.77162 1.90708 1.49746 1.50148 1.49253 1.47971 1.04834 1.09918 1.70816 1.21694 0.99617 0.81449 0.97911 1.22409 0.97156 0.99516 0.99183 1.21408 0.96472 0.94479 0.97962 1.21149 0.89724 0.95661 0.88333 0.94278 1.22625 0.97804 0.99120 0.96997 1.22783 0.98177 0.99600 0.97158 1.21878 0.89709 0.91516 0.97471 1.44463 1.27476 1.27323 1.33045 1.18498 0.86853 1.39592 0.93692 0.89905 1.26034 0.96213 0.94856 0.98256 1.69794 1.25862 1.46234 1.11905 0.86585 0.85473 0.76772 0.78970 1.21279 1.23037 1.18952 1.21927 0.98651 0.97823 0.97627 1.22032 0.90082 0.90847 0.99208 0.76155 0.90351 0.90731 0.91097 0.91268 0.90056 0.92601 0.89531 0.91733 0.86729 0.93074 0.91523 0.92349 0.92147 0.92052 0.95693 0.94258 0.92534 0.89475 0.91662 0.91784 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 19.25 29.55 0.57 -1.36 16 2 C -0.19 -2.41 13.73 -37.12 -0.51 -2.92 16 3 C 0.17 1.96 6.22 34.37 0.21 2.18 16 4 O -0.35 -5.32 9.48 -55.09 -0.52 -5.84 16 5 C 0.07 0.94 2.30 -27.88 -0.06 0.87 16 6 H 0.09 1.01 7.08 -51.92 -0.37 0.64 16 7 C -0.18 -1.67 9.10 37.16 0.34 -1.34 16 8 C 0.52 8.74 7.12 -10.98 -0.08 8.66 16 9 O -0.52 -11.26 15.92 -14.30 -0.23 -11.49 16 10 N -0.60 -9.03 2.97 -172.73 -0.51 -9.54 16 11 C 0.11 1.83 6.43 -3.71 -0.02 1.81 16 12 C -0.15 -2.56 4.99 -26.61 -0.13 -2.69 16 13 C -0.08 -1.29 1.90 -90.58 -0.17 -1.46 16 14 C 0.16 2.84 2.93 -66.96 -0.20 2.64 16 15 H 0.04 0.78 8.14 -51.94 -0.42 0.36 16 16 C -0.13 -1.89 6.29 -24.91 -0.16 -2.04 16 17 C -0.14 -2.25 7.08 -24.59 -0.17 -2.42 16 18 C 0.12 2.33 6.25 -2.53 -0.02 2.32 16 19 N -0.60 -12.87 1.25 -162.59 -0.20 -13.07 16 20 C -0.26 -6.70 8.76 -15.06 -0.13 -6.83 16 21 H 0.08 2.35 5.42 -52.49 -0.28 2.07 16 22 C 0.05 1.38 5.50 -17.43 -0.10 1.28 16 23 N -0.90 -26.82 13.97 55.49 0.78 -26.04 16 24 Si 0.89 21.96 25.56 -169.99 -4.34 17.61 16 25 H -0.29 -6.94 6.88 56.52 0.39 -6.55 16 26 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 27 H -0.26 -6.34 6.92 56.52 0.39 -5.95 16 28 C -0.12 -1.74 4.92 -26.58 -0.13 -1.87 16 29 C 0.10 1.19 4.98 -3.68 -0.02 1.17 16 30 H 0.22 1.52 7.80 -54.10 -0.42 1.10 16 31 H 0.08 0.83 8.09 -51.92 -0.42 0.41 16 32 H 0.07 0.63 7.87 -51.93 -0.41 0.23 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.51 7.87 -51.93 -0.41 0.10 16 35 H 0.08 0.64 5.41 -51.93 -0.28 0.36 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.09 1.55 7.01 -51.92 -0.36 1.19 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.11 2.54 4.21 -51.93 -0.22 2.32 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.87 6.18 -51.93 -0.32 0.55 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.06 1.06 7.96 -51.92 -0.41 0.65 16 45 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.04 0.86 5.19 -51.93 -0.27 0.59 16 47 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 48 H 0.09 1.56 7.22 -51.93 -0.37 1.19 16 49 H 0.06 0.82 6.41 -51.93 -0.33 0.49 16 50 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 51 H 0.08 0.76 4.66 -51.93 -0.24 0.52 16 LS Contribution 387.78 15.07 5.84 5.84 Total: -1.00 -33.59 387.78 -8.06 -41.65 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -8.09 Total: 2.90 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -0.78 Total: -2.02 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.06 Total: -48.66 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.75 Total: -17.33 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.34 Total: 17.61 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.59 -8.06 -41.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230569592.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.138 kcal (2) G-P(sol) polarization free energy of solvation -33.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds