Wall clock time and date at job start Tue Mar 31 2020 17:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 O 1.42894 * 109.47514 * 18.53985 * 3 2 1 5 5 C 1.42899 * 114.00511 * 179.97438 * 4 3 2 6 6 H 1.09007 * 109.46659 * 30.00232 * 5 4 3 7 7 C 1.52998 * 109.47235 * 270.00646 * 5 4 3 8 8 C 1.50701 * 109.47273 * 149.99692 * 5 4 3 9 9 O 1.21279 * 120.00175 * 5.00987 * 8 5 4 10 10 N 1.34778 * 119.99806 * 184.99748 * 8 5 4 11 11 C 1.46925 * 120.62969 * 180.02562 * 10 8 5 12 12 C 1.53193 * 108.78011 * 233.59326 * 11 10 8 13 13 C 1.53041 * 109.30988 * 305.36800 * 12 11 10 14 14 C 1.53001 * 109.45752 * 181.38722 * 13 12 11 15 15 H 1.08989 * 110.00130 * 52.33762 * 14 13 12 16 16 C 1.54310 * 109.77463 * 173.50106 * 14 13 12 17 17 C 1.55150 * 102.86808 * 141.88027 * 16 14 13 18 18 C 1.54911 * 101.58222 * 324.30515 * 17 16 14 19 19 N 1.47027 * 109.87809 * 291.24138 * 14 13 12 20 20 C 1.36936 * 125.64421 * 61.68474 * 19 14 13 21 21 H 1.07998 * 120.00415 * 301.10121 * 20 19 14 22 22 C 1.38815 * 119.99843 * 121.10265 * 20 19 14 23 23 N 1.31622 * 119.99860 * 172.92513 * 22 20 19 24 24 Si 1.86799 * 120.00272 * 352.92127 * 22 20 19 25 25 H 1.48503 * 109.46853 * 88.80226 * 24 22 20 26 26 H 1.48498 * 109.47363 * 208.79812 * 24 22 20 27 27 H 1.48493 * 109.47115 * 328.80424 * 24 22 20 28 28 C 1.53037 * 109.53850 * 61.36279 * 13 12 11 29 29 C 1.46922 * 120.63255 * 359.97438 * 10 8 5 30 30 H 4.38444 * 5.44457 * 179.97438 * 4 1 2 31 31 H 1.09008 * 109.46783 * 258.53993 * 3 2 1 32 32 H 1.09000 * 109.47169 * 138.54464 * 3 2 1 33 33 H 1.08995 * 109.46698 * 299.99178 * 7 5 4 34 34 H 1.08998 * 109.47131 * 59.99648 * 7 5 4 35 35 H 1.09003 * 109.46719 * 179.97438 * 7 5 4 36 36 H 1.09001 * 109.58720 * 113.80208 * 11 10 8 37 37 H 1.09007 * 109.58379 * 353.38503 * 11 10 8 38 38 H 1.08997 * 109.49873 * 185.41482 * 12 11 10 39 39 H 1.08998 * 109.49468 * 65.31238 * 12 11 10 40 40 H 1.09005 * 109.45986 * 301.35444 * 13 12 11 41 41 H 1.09003 * 110.92722 * 23.46572 * 16 14 13 42 42 H 1.09002 * 110.58900 * 260.14088 * 16 14 13 43 43 H 1.08993 * 111.00834 * 206.22635 * 17 16 14 44 44 H 1.09008 * 111.03638 * 82.38914 * 17 16 14 45 45 H 1.08998 * 110.36039 * 278.16745 * 18 17 16 46 46 H 1.08998 * 110.46112 * 155.89651 * 18 17 16 47 47 H 0.97004 * 120.00145 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.49939 * 58.58618 * 28 13 12 49 49 H 1.08998 * 109.49705 * 178.68232 * 28 13 12 50 50 H 1.09005 * 109.58171 * 246.19553 * 29 10 8 51 51 H 1.09000 * 109.58637 * 6.61358 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1230 -1.2764 -0.4284 5 6 4.5476 -1.3826 -0.4648 6 1 4.9800 -0.7316 0.2952 7 6 5.0552 -0.9619 -1.8454 8 6 4.9522 -2.8087 -0.1938 9 8 4.1043 -3.6684 -0.0797 10 7 6.2563 -3.1289 -0.0784 11 6 6.6663 -4.5150 0.1852 12 6 7.5779 -4.5340 1.4162 13 6 8.7420 -3.5646 1.1989 14 6 9.6735 -3.6066 2.4120 15 1 9.9586 -4.6362 2.6276 16 6 10.9318 -2.7580 2.1336 17 6 11.2068 -2.0874 3.5054 18 6 9.7684 -1.8427 4.0259 19 7 9.0004 -3.0192 3.5797 20 6 7.8532 -3.4905 4.1603 21 1 6.9465 -3.5689 3.5789 22 6 7.8559 -3.8676 5.4962 23 7 6.7267 -4.1878 6.0919 24 14 9.4620 -3.9209 6.4486 25 1 9.7225 -2.5904 7.0545 26 1 9.3677 -4.9434 7.5214 27 1 10.5725 -4.2711 5.5271 28 6 8.1994 -2.1447 1.0215 29 6 7.2949 -2.0988 -0.2149 30 1 -1.0497 -0.0005 0.0000 31 1 3.0093 0.2050 1.0073 32 1 3.0090 0.7710 -0.6803 33 1 4.6229 -1.6128 -2.6053 34 1 4.7626 0.0697 -2.0413 35 1 6.1419 -1.0425 -1.8730 36 1 7.2075 -4.9061 -0.6764 37 1 5.7844 -5.1273 0.3740 38 1 7.9663 -5.5414 1.5658 39 1 7.0094 -4.2286 2.2946 40 1 9.2953 -3.8560 0.3060 41 1 10.7332 -2.0061 1.3698 42 1 11.7668 -3.3948 1.8414 43 1 11.7423 -1.1464 3.3801 44 1 11.7526 -2.7600 4.1673 45 1 9.3567 -0.9329 3.5890 46 1 9.7630 -1.7763 5.1138 47 1 6.7285 -4.4517 7.0253 48 1 7.6251 -1.8618 1.9036 49 1 9.0303 -1.4516 0.8901 50 1 7.8873 -2.2935 -1.1090 51 1 6.8280 -1.1168 -0.2901 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230569592.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:38 Heat of formation + Delta-G solvation = -12.347926 kcal Electronic energy + Delta-G solvation = -30644.034958 eV Core-core repulsion = 26738.304784 eV Total energy + Delta-G solvation = -3905.730175 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.56039 -40.12946 -38.92628 -37.60647 -34.72722 -34.63100 -34.03737 -32.59583 -31.79089 -31.26277 -29.35123 -28.11933 -26.45726 -25.97178 -24.32568 -24.12341 -22.34063 -21.60854 -20.75206 -20.05210 -19.48273 -18.90092 -18.22536 -17.80083 -17.38355 -17.03547 -16.56805 -16.30573 -15.92839 -15.67104 -15.40308 -15.10368 -14.77248 -14.64050 -14.56027 -14.36645 -14.20879 -13.87440 -13.72114 -13.46745 -13.21337 -13.11648 -13.06351 -12.95355 -12.66296 -12.58786 -12.41390 -12.25238 -12.04973 -11.80117 -11.77520 -11.67355 -11.58251 -11.56328 -11.17837 -11.02464 -10.87402 -10.79381 -10.60218 -10.43454 -9.58512 -8.33362 -7.94494 -5.85722 1.30158 1.32076 1.37025 1.50182 1.55300 1.78861 2.00955 2.42365 2.96664 3.12002 3.38562 3.49528 3.62402 3.82718 3.92484 3.99965 4.02648 4.11808 4.20566 4.22532 4.26392 4.31151 4.36961 4.42794 4.51297 4.53965 4.67734 4.71268 4.76611 4.82296 4.87122 4.89237 4.93279 4.98550 5.05164 5.10851 5.12794 5.19808 5.22624 5.34109 5.44441 5.45234 5.55410 5.59172 5.68772 5.83187 5.98470 6.04193 6.43942 6.49972 6.56896 7.06549 7.15114 7.56386 8.37687 9.01540 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012799 B = 0.003541 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.191193 B = 7905.690596 C = 8800.443437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.240 4.240 3 C 0.163 3.837 4 O -0.388 6.388 5 C 0.074 3.926 6 H 0.109 0.891 7 C -0.167 4.167 8 C 0.502 3.498 9 O -0.587 6.587 10 N -0.598 5.598 11 C 0.120 3.880 12 C -0.139 4.139 13 C -0.076 4.076 14 C 0.147 3.853 15 H 0.014 0.986 16 C -0.113 4.113 17 C -0.131 4.131 18 C 0.111 3.889 19 N -0.610 5.610 20 C -0.227 4.227 21 H 0.048 0.952 22 C -0.014 4.014 23 N -0.956 5.956 24 Si 0.952 3.048 25 H -0.279 1.279 26 H -0.315 1.315 27 H -0.252 1.252 28 C -0.115 4.115 29 C 0.099 3.901 30 H 0.255 0.745 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.048 0.952 45 H 0.039 0.961 46 H 0.013 0.987 47 H 0.260 0.740 48 H 0.041 0.959 49 H 0.098 0.902 50 H 0.105 0.895 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.288 12.406 -18.325 22.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.241 4.241 3 C 0.088 3.912 4 O -0.308 6.308 5 C 0.013 3.987 6 H 0.127 0.873 7 C -0.225 4.225 8 C 0.291 3.709 9 O -0.467 6.467 10 N -0.331 5.331 11 C -0.002 4.002 12 C -0.177 4.177 13 C -0.096 4.096 14 C 0.042 3.958 15 H 0.032 0.968 16 C -0.150 4.150 17 C -0.169 4.169 18 C -0.013 4.013 19 N -0.337 5.337 20 C -0.357 4.357 21 H 0.065 0.935 22 C -0.211 4.211 23 N -0.600 5.600 24 Si 0.781 3.219 25 H -0.206 1.206 26 H -0.244 1.244 27 H -0.176 1.176 28 C -0.153 4.153 29 C -0.022 4.022 30 H 0.271 0.729 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.122 0.878 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.116 0.884 42 H 0.100 0.900 43 H 0.117 0.883 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.031 0.969 47 H 0.069 0.931 48 H 0.060 0.940 49 H 0.116 0.884 50 H 0.123 0.877 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.605 11.732 -18.142 22.090 hybrid contribution -0.209 -0.719 1.802 1.952 sum 4.397 11.013 -16.339 20.189 Atomic orbital electron populations 1.25881 0.96881 0.96155 0.99060 1.23145 0.95072 1.03562 1.02274 1.19451 0.84798 0.85906 1.01026 1.88053 1.20374 1.34184 1.88172 1.22051 0.82172 0.92749 1.01695 0.87314 1.22413 1.03510 1.03637 0.92901 1.21121 0.82397 0.91365 0.76054 1.90669 1.51541 1.52271 1.52251 1.48125 1.05293 1.10206 1.69523 1.21538 0.98084 0.82318 0.98271 1.22216 0.97947 0.99709 0.97855 1.21372 0.95100 0.94936 0.98232 1.21359 0.91867 0.95013 0.87544 0.96841 1.22617 0.96156 0.99333 0.96937 1.22760 0.95395 1.01389 0.97378 1.22007 0.92132 0.91014 0.96181 1.44543 1.26544 1.28596 1.33999 1.18366 0.87645 1.36694 0.93030 0.93514 1.26715 0.98772 0.95976 0.99663 1.69948 1.28063 1.49885 1.12056 0.85614 0.82286 0.76475 0.77536 1.20608 1.24368 1.17561 1.21840 0.99471 0.97054 0.96976 1.22369 0.89227 0.91177 0.99439 0.72892 0.90188 0.87246 0.92465 0.88460 0.87755 0.89106 0.93018 0.92731 0.92150 0.89235 0.88351 0.89971 0.88337 0.93329 0.94301 0.96903 0.93079 0.94017 0.88414 0.87747 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 19.25 74.32 1.43 -2.04 16 2 C -0.24 -6.15 13.73 31.12 0.43 -5.72 16 3 C 0.16 3.72 6.22 70.18 0.44 4.16 16 4 O -0.39 -11.90 9.48 -129.99 -1.23 -13.13 16 5 C 0.07 1.84 2.30 29.85 0.07 1.91 16 6 H 0.11 2.23 7.08 -2.38 -0.02 2.22 16 7 C -0.17 -2.59 9.10 71.98 0.66 -1.94 16 8 C 0.50 17.31 7.12 87.66 0.62 17.94 16 9 O -0.59 -27.06 15.92 15.96 0.25 -26.81 16 10 N -0.60 -17.47 2.97 -818.77 -2.43 -19.90 16 11 C 0.12 3.88 6.43 86.36 0.56 4.43 16 12 C -0.14 -5.07 4.99 30.67 0.15 -4.91 16 13 C -0.08 -2.19 1.90 -10.77 -0.02 -2.21 16 14 C 0.15 5.00 2.93 45.34 0.13 5.13 16 15 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 16 C -0.11 -2.72 6.29 31.78 0.20 -2.52 16 17 C -0.13 -3.65 7.08 31.98 0.23 -3.42 16 18 C 0.11 4.13 6.25 86.86 0.54 4.67 16 19 N -0.61 -26.18 1.25 -668.30 -0.84 -27.02 16 20 C -0.23 -12.42 8.76 84.03 0.74 -11.68 16 21 H 0.05 2.92 5.42 -2.91 -0.02 2.90 16 22 C -0.01 -0.84 5.50 84.86 0.47 -0.37 16 23 N -0.96 -61.01 13.97 21.65 0.30 -60.71 16 24 Si 0.95 47.05 25.56 68.60 1.75 48.80 16 25 H -0.28 -13.35 6.88 99.48 0.68 -12.66 16 26 H -0.31 -16.04 7.11 99.48 0.71 -15.33 16 27 H -0.25 -11.68 6.92 99.48 0.69 -10.99 16 28 C -0.12 -2.88 4.92 30.69 0.15 -2.73 16 29 C 0.10 1.91 4.98 86.39 0.43 2.34 16 30 H 0.25 3.04 7.80 -4.43 -0.03 3.00 16 31 H 0.08 1.71 8.09 -2.38 -0.02 1.69 16 32 H 0.11 1.62 7.87 -2.39 -0.02 1.60 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.10 0.99 7.87 -2.39 -0.02 0.97 16 35 H 0.10 1.10 5.41 -2.39 -0.01 1.09 16 36 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.05 2.02 7.01 -2.38 -0.02 2.00 16 38 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.06 2.91 4.21 -2.39 -0.01 2.90 16 40 H 0.09 1.97 8.14 -2.38 -0.02 1.96 16 41 H 0.10 1.80 6.18 -2.39 -0.01 1.79 16 42 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.05 1.49 7.96 -2.38 -0.02 1.47 16 45 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.01 0.54 5.19 -2.39 -0.01 0.53 16 47 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 48 H 0.04 1.45 7.22 -2.39 -0.02 1.43 16 49 H 0.10 1.85 6.41 -2.39 -0.02 1.83 16 50 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 51 H 0.11 1.52 4.66 -2.39 -0.01 1.51 16 Total: -1.00 -84.42 387.78 5.90 -78.51 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.88 Total: 17.21 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 7.22 Total: 3.04 kcal Atomic # 7 Polarization: -104.66 SS G_CDS: -2.97 Total: -107.62 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -0.98 Total: -39.94 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.75 Total: 48.80 kcal Total: -84.42 5.90 -78.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230569592.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.163 kcal (2) G-P(sol) polarization free energy of solvation -84.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds