Wall clock time and date at job start Tue Mar 31 2020 17:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42898 * 109.46991 * 144.39851 * 3 2 1 5 5 C 1.42907 * 113.99933 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47082 * 329.99889 * 5 4 3 7 7 C 1.53002 * 109.47222 * 89.99786 * 5 4 3 8 8 C 1.50693 * 109.46877 * 209.99969 * 5 4 3 9 9 O 1.21275 * 120.00249 * 347.91713 * 8 5 4 10 10 N 1.34786 * 119.99696 * 167.92663 * 8 5 4 11 11 C 1.46920 * 120.63113 * 4.47312 * 10 8 5 12 12 C 1.52757 * 109.00826 * 233.58572 * 11 10 8 13 13 C 1.53044 * 109.38585 * 305.59187 * 12 11 10 14 14 C 1.52999 * 109.46254 * 181.26039 * 13 12 11 15 15 H 1.09003 * 109.87133 * 61.58803 * 14 13 12 16 16 C 1.54323 * 109.88071 * 300.57439 * 14 13 12 17 17 C 1.55158 * 102.94226 * 218.38941 * 16 14 13 18 18 C 1.54912 * 101.57771 * 35.50173 * 17 16 14 19 19 N 1.47018 * 109.88081 * 182.76527 * 14 13 12 20 20 C 1.36938 * 125.65173 * 298.33359 * 19 14 13 21 21 H 1.08002 * 119.99662 * 345.58197 * 20 19 14 22 22 C 1.38804 * 120.00100 * 165.57898 * 20 19 14 23 23 N 1.31619 * 120.00327 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99965 * 180.02562 * 22 20 19 25 25 H 1.48510 * 109.47097 * 60.00034 * 24 22 20 26 26 H 1.48497 * 109.47202 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47289 * 300.00145 * 24 22 20 28 28 C 1.53037 * 109.53644 * 61.23570 * 13 12 11 29 29 C 1.46927 * 120.62808 * 184.75575 * 10 8 5 30 30 H 4.38441 * 5.44452 * 180.02562 * 4 1 2 31 31 H 1.09005 * 109.46927 * 264.39505 * 3 2 1 32 32 H 1.08999 * 109.47689 * 24.39534 * 3 2 1 33 33 H 1.08998 * 109.46827 * 178.76641 * 7 5 4 34 34 H 1.09004 * 109.46868 * 298.76170 * 7 5 4 35 35 H 1.08998 * 109.47377 * 58.76136 * 7 5 4 36 36 H 1.08996 * 109.58791 * 353.41965 * 11 10 8 37 37 H 1.09003 * 109.58573 * 113.84531 * 11 10 8 38 38 H 1.08993 * 109.56767 * 185.55186 * 12 11 10 39 39 H 1.08999 * 109.36177 * 65.49782 * 12 11 10 40 40 H 1.09001 * 109.45492 * 301.21561 * 13 12 11 41 41 H 1.08998 * 110.72301 * 336.75281 * 16 14 13 42 42 H 1.09004 * 110.72305 * 99.85111 * 16 14 13 43 43 H 1.09001 * 111.00595 * 153.57583 * 17 16 14 44 44 H 1.09007 * 111.00603 * 277.42748 * 17 16 14 45 45 H 1.08994 * 110.36862 * 81.83337 * 18 17 16 46 46 H 1.09000 * 110.35965 * 204.04277 * 18 17 16 47 47 H 0.97001 * 120.00498 * 179.97438 * 23 22 20 48 48 H 1.09007 * 109.49436 * 178.68687 * 28 13 12 49 49 H 1.09000 * 109.52364 * 58.60812 * 28 13 12 50 50 H 1.09000 * 109.58603 * 246.15104 * 29 10 8 51 51 H 1.09004 * 109.58738 * 6.57721 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.0963 -0.7843 5 6 4.5464 1.1891 -0.8495 6 1 4.9788 0.7906 0.0683 7 6 5.0558 0.3822 -2.0455 8 6 4.9490 2.6324 -1.0091 9 8 4.1135 3.4685 -1.2807 10 7 6.2376 2.9941 -0.8503 11 6 7.2763 1.9812 -0.6182 12 6 8.0547 2.3470 0.6442 13 6 8.5872 3.7761 0.5165 14 6 9.3938 4.1332 1.7666 15 1 10.2482 3.4629 1.8603 16 6 8.4986 4.0206 3.0186 17 6 8.9614 5.2211 3.8858 18 6 9.2697 6.2858 2.8037 19 7 9.8544 5.5269 1.6832 20 6 10.6887 6.0357 0.7239 21 1 11.2486 5.3680 0.0859 22 6 10.8147 7.4096 0.5715 23 7 10.1327 8.2234 1.3493 24 14 11.9523 8.1037 -0.7375 25 1 11.5124 7.6331 -2.0757 26 1 11.9078 9.5874 -0.6959 27 1 13.3405 7.6422 -0.4823 28 6 7.4143 4.7483 0.3714 29 6 6.6294 4.4093 -0.8997 30 1 -1.0501 -0.0001 0.0003 31 1 3.0093 0.1012 1.0228 32 1 3.0099 -0.9350 -0.4244 33 1 6.1404 0.4708 -2.1081 34 1 4.7836 -0.6657 -1.9193 35 1 4.6063 0.7665 -2.9611 36 1 6.8112 1.0040 -0.4888 37 1 7.9571 1.9544 -1.4691 38 1 8.8894 1.6577 0.7709 39 1 7.3935 2.2811 1.5083 40 1 9.2287 3.8473 -0.3619 41 1 7.4468 4.1211 2.7510 42 1 8.6752 3.0773 3.5354 43 1 8.1625 5.5562 4.5473 44 1 9.8574 4.9704 4.4538 45 1 8.3523 6.7824 2.4878 46 1 9.9842 7.0163 3.1831 47 1 10.2211 9.1835 1.2431 48 1 7.7933 5.7681 0.3039 49 1 6.7589 4.6603 1.2380 50 1 7.2564 4.5845 -1.7739 51 1 5.7377 5.0336 -0.9560 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230569594.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:46 Heat of formation + Delta-G solvation = 3.560107 kcal Electronic energy + Delta-G solvation = -30169.107475 eV Core-core repulsion = 26264.067125 eV Total energy + Delta-G solvation = -3905.040351 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.48399 -38.81489 -37.84201 -36.31091 -33.84040 -33.09874 -32.34611 -31.65423 -30.40784 -29.33050 -27.69380 -27.42183 -25.09907 -24.43513 -23.42964 -22.75977 -21.18791 -20.12216 -19.56327 -18.98417 -18.18137 -17.38286 -16.85768 -16.60280 -16.06295 -15.62183 -15.19897 -14.95442 -14.75488 -14.63573 -13.98761 -13.92293 -13.81669 -13.60103 -13.37109 -13.01958 -12.65784 -12.51501 -12.45179 -12.13734 -12.03280 -11.82556 -11.69806 -11.46271 -11.22752 -11.00314 -10.96187 -10.87713 -10.83177 -10.80463 -10.38541 -10.20551 -10.11685 -10.01477 -9.85187 -9.70312 -9.61795 -9.43836 -9.39905 -8.58089 -8.48182 -6.75390 -5.73340 -3.08352 2.09116 2.50733 2.62228 2.94058 3.39069 3.44233 3.45356 3.69177 4.17209 4.37572 4.48573 4.54470 4.71205 4.82688 4.85743 5.03864 5.06353 5.16911 5.27148 5.35225 5.39365 5.44228 5.46527 5.52572 5.59536 5.71454 5.74095 5.77004 5.81374 5.87900 5.91891 6.00210 6.12547 6.22320 6.28998 6.36052 6.48235 6.53331 6.58371 6.64308 6.73741 6.77340 7.00537 7.06519 7.17305 7.26935 7.46934 7.56414 7.64785 7.81983 8.22281 8.30375 9.21703 9.83325 10.52935 11.38501 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017769 B = 0.002792 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.391035 B =10027.097181 C =10534.982059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.192 4.192 3 C 0.169 3.831 4 O -0.351 6.351 5 C 0.072 3.928 6 H 0.088 0.912 7 C -0.176 4.176 8 C 0.515 3.485 9 O -0.524 6.524 10 N -0.604 5.604 11 C 0.103 3.897 12 C -0.132 4.132 13 C -0.092 4.092 14 C 0.167 3.833 15 H 0.030 0.970 16 C -0.127 4.127 17 C -0.151 4.151 18 C 0.174 3.826 19 N -0.592 5.592 20 C -0.225 4.225 21 H 0.072 0.928 22 C -0.003 4.003 23 N -0.917 5.917 24 Si 0.906 3.094 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.117 4.117 29 C 0.113 3.887 30 H 0.222 0.778 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.024 0.976 46 H 0.068 0.932 47 H 0.253 0.747 48 H 0.098 0.902 49 H 0.056 0.944 50 H 0.066 0.934 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.127 -19.043 -0.960 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.192 4.192 3 C 0.094 3.906 4 O -0.270 6.270 5 C 0.011 3.989 6 H 0.106 0.894 7 C -0.234 4.234 8 C 0.301 3.699 9 O -0.399 6.399 10 N -0.339 5.339 11 C -0.020 4.020 12 C -0.171 4.171 13 C -0.113 4.113 14 C 0.059 3.941 15 H 0.048 0.952 16 C -0.165 4.165 17 C -0.189 4.189 18 C 0.049 3.951 19 N -0.316 5.316 20 C -0.354 4.354 21 H 0.090 0.910 22 C -0.200 4.200 23 N -0.563 5.563 24 Si 0.736 3.264 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.155 4.155 29 C -0.008 4.008 30 H 0.239 0.761 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.042 0.958 46 H 0.086 0.914 47 H 0.063 0.937 48 H 0.117 0.883 49 H 0.075 0.925 50 H 0.085 0.915 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.617 -18.206 -1.274 21.114 hybrid contribution 0.650 0.188 -0.583 0.893 sum -9.967 -18.018 -1.857 20.674 Atomic orbital electron populations 1.24976 0.95888 0.98513 0.99563 1.22430 0.93801 1.01714 1.01264 1.19181 0.85098 0.90519 0.95831 1.88129 1.19133 1.48647 1.71074 1.21936 0.82590 0.94306 1.00081 0.89404 1.22359 1.02326 1.00213 0.98466 1.20202 0.82313 0.89803 0.77617 1.90713 1.50023 1.52491 1.46671 1.48124 1.06120 1.08551 1.71086 1.21849 0.90356 0.90772 0.99052 1.21959 0.99519 0.98791 0.96790 1.21568 0.96737 0.91819 1.01128 1.20915 0.93103 0.88496 0.91542 0.95220 1.22650 0.99564 0.97663 0.96642 1.23014 0.99507 0.97958 0.98455 1.21394 0.97257 0.91436 0.84984 1.44463 1.54257 1.03946 1.28927 1.18859 1.16598 0.89989 1.09925 0.91041 1.24854 0.99848 0.96151 0.99163 1.69919 1.44040 1.02355 1.40005 0.86303 0.80376 0.78007 0.81677 1.21167 1.21698 1.21275 1.21873 0.95961 1.02166 0.95451 1.21769 0.99960 0.79827 0.99287 0.76100 0.90584 0.90625 0.90212 0.91155 0.90871 0.90301 0.91076 0.91007 0.91691 0.91299 0.91655 0.92858 0.92698 0.92606 0.95777 0.91401 0.93685 0.88334 0.92523 0.91531 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 19.25 29.55 0.57 -1.00 16 2 C -0.19 -2.06 13.73 -37.12 -0.51 -2.57 16 3 C 0.17 1.57 6.22 34.37 0.21 1.79 16 4 O -0.35 -4.56 9.51 -54.85 -0.52 -5.08 16 5 C 0.07 0.78 2.28 -27.89 -0.06 0.72 16 6 H 0.09 0.71 6.89 -51.93 -0.36 0.35 16 7 C -0.18 -1.44 9.14 37.16 0.34 -1.10 16 8 C 0.51 7.65 7.05 -10.98 -0.08 7.57 16 9 O -0.52 -10.22 15.98 -14.05 -0.22 -10.44 16 10 N -0.60 -8.23 2.98 -173.04 -0.52 -8.75 16 11 C 0.10 1.07 5.21 -3.94 -0.02 1.05 16 12 C -0.13 -1.57 5.07 -26.83 -0.14 -1.70 16 13 C -0.09 -1.49 1.91 -90.58 -0.17 -1.66 16 14 C 0.17 3.12 2.96 -66.96 -0.20 2.92 16 15 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 16 C -0.13 -2.10 5.21 -24.90 -0.13 -2.23 16 17 C -0.15 -2.77 7.09 -24.58 -0.17 -2.94 16 18 C 0.17 4.05 5.41 -2.53 -0.01 4.03 16 19 N -0.59 -13.88 2.24 -162.58 -0.36 -14.24 16 20 C -0.23 -5.86 9.86 -15.06 -0.15 -6.01 16 21 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 22 C 0.00 -0.09 5.47 -17.43 -0.10 -0.18 16 23 N -0.92 -26.00 10.57 55.49 0.59 -25.41 16 24 Si 0.91 21.53 29.55 -169.99 -5.02 16.50 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 C -0.12 -2.03 4.93 -26.61 -0.13 -2.16 16 29 C 0.11 1.80 6.42 -3.71 -0.02 1.78 16 30 H 0.22 1.15 7.80 -54.08 -0.42 0.73 16 31 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 32 H 0.08 0.49 7.90 -51.93 -0.41 0.08 16 33 H 0.08 0.55 5.90 -51.93 -0.31 0.24 16 34 H 0.07 0.42 7.90 -51.93 -0.41 0.01 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.59 4.67 -51.93 -0.24 0.35 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.77 7.06 -51.93 -0.37 0.40 16 40 H 0.07 1.23 8.06 -51.93 -0.42 0.81 16 41 H 0.06 1.06 5.50 -51.93 -0.29 0.78 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.02 0.61 8.06 -51.93 -0.42 0.19 16 46 H 0.07 1.79 6.92 -51.93 -0.36 1.43 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.74 16 48 H 0.10 2.14 7.51 -51.92 -0.39 1.75 16 49 H 0.06 1.00 6.17 -51.93 -0.32 0.68 16 50 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 51 H 0.09 1.50 7.03 -51.93 -0.37 1.14 16 LS Contribution 396.09 15.07 5.97 5.97 Total: -1.00 -32.84 396.09 -9.29 -42.13 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -8.42 Total: 1.04 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -0.77 Total: -1.71 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -0.29 Total: -48.40 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.75 Total: -15.52 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.84 -9.29 -42.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230569594.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.691 kcal (2) G-P(sol) polarization free energy of solvation -32.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds