Wall clock time and date at job start Tue Mar 31 2020 17:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42898 * 109.46991 * 144.39851 * 3 2 1 5 5 C 1.42907 * 113.99933 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47082 * 329.99889 * 5 4 3 7 7 C 1.53002 * 109.47222 * 89.99786 * 5 4 3 8 8 C 1.50693 * 109.46877 * 209.99969 * 5 4 3 9 9 O 1.21275 * 120.00249 * 347.91713 * 8 5 4 10 10 N 1.34786 * 119.99696 * 167.92663 * 8 5 4 11 11 C 1.46920 * 120.63113 * 4.47312 * 10 8 5 12 12 C 1.52757 * 109.00826 * 233.58572 * 11 10 8 13 13 C 1.53044 * 109.38585 * 305.59187 * 12 11 10 14 14 C 1.52999 * 109.46254 * 181.26039 * 13 12 11 15 15 H 1.09003 * 109.87133 * 61.58803 * 14 13 12 16 16 C 1.54323 * 109.88071 * 300.57439 * 14 13 12 17 17 C 1.55158 * 102.94226 * 218.38941 * 16 14 13 18 18 C 1.54912 * 101.57771 * 35.50173 * 17 16 14 19 19 N 1.47018 * 109.88081 * 182.76527 * 14 13 12 20 20 C 1.36938 * 125.65173 * 298.33359 * 19 14 13 21 21 H 1.08002 * 119.99662 * 345.58197 * 20 19 14 22 22 C 1.38804 * 120.00100 * 165.57898 * 20 19 14 23 23 N 1.31619 * 120.00327 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99965 * 180.02562 * 22 20 19 25 25 H 1.48510 * 109.47097 * 60.00034 * 24 22 20 26 26 H 1.48497 * 109.47202 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47289 * 300.00145 * 24 22 20 28 28 C 1.53037 * 109.53644 * 61.23570 * 13 12 11 29 29 C 1.46927 * 120.62808 * 184.75575 * 10 8 5 30 30 H 4.38441 * 5.44452 * 180.02562 * 4 1 2 31 31 H 1.09005 * 109.46927 * 264.39505 * 3 2 1 32 32 H 1.08999 * 109.47689 * 24.39534 * 3 2 1 33 33 H 1.08998 * 109.46827 * 178.76641 * 7 5 4 34 34 H 1.09004 * 109.46868 * 298.76170 * 7 5 4 35 35 H 1.08998 * 109.47377 * 58.76136 * 7 5 4 36 36 H 1.08996 * 109.58791 * 353.41965 * 11 10 8 37 37 H 1.09003 * 109.58573 * 113.84531 * 11 10 8 38 38 H 1.08993 * 109.56767 * 185.55186 * 12 11 10 39 39 H 1.08999 * 109.36177 * 65.49782 * 12 11 10 40 40 H 1.09001 * 109.45492 * 301.21561 * 13 12 11 41 41 H 1.08998 * 110.72301 * 336.75281 * 16 14 13 42 42 H 1.09004 * 110.72305 * 99.85111 * 16 14 13 43 43 H 1.09001 * 111.00595 * 153.57583 * 17 16 14 44 44 H 1.09007 * 111.00603 * 277.42748 * 17 16 14 45 45 H 1.08994 * 110.36862 * 81.83337 * 18 17 16 46 46 H 1.09000 * 110.35965 * 204.04277 * 18 17 16 47 47 H 0.97001 * 120.00498 * 179.97438 * 23 22 20 48 48 H 1.09007 * 109.49436 * 178.68687 * 28 13 12 49 49 H 1.09000 * 109.52364 * 58.60812 * 28 13 12 50 50 H 1.09000 * 109.58603 * 246.15104 * 29 10 8 51 51 H 1.09004 * 109.58738 * 6.57721 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.0963 -0.7843 5 6 4.5464 1.1891 -0.8495 6 1 4.9788 0.7906 0.0683 7 6 5.0558 0.3822 -2.0455 8 6 4.9490 2.6324 -1.0091 9 8 4.1135 3.4685 -1.2807 10 7 6.2376 2.9941 -0.8503 11 6 7.2763 1.9812 -0.6182 12 6 8.0547 2.3470 0.6442 13 6 8.5872 3.7761 0.5165 14 6 9.3938 4.1332 1.7666 15 1 10.2482 3.4629 1.8603 16 6 8.4986 4.0206 3.0186 17 6 8.9614 5.2211 3.8858 18 6 9.2697 6.2858 2.8037 19 7 9.8544 5.5269 1.6832 20 6 10.6887 6.0357 0.7239 21 1 11.2486 5.3680 0.0859 22 6 10.8147 7.4096 0.5715 23 7 10.1327 8.2234 1.3493 24 14 11.9523 8.1037 -0.7375 25 1 11.5124 7.6331 -2.0757 26 1 11.9078 9.5874 -0.6959 27 1 13.3405 7.6422 -0.4823 28 6 7.4143 4.7483 0.3714 29 6 6.6294 4.4093 -0.8997 30 1 -1.0501 -0.0001 0.0003 31 1 3.0093 0.1012 1.0228 32 1 3.0099 -0.9350 -0.4244 33 1 6.1404 0.4708 -2.1081 34 1 4.7836 -0.6657 -1.9193 35 1 4.6063 0.7665 -2.9611 36 1 6.8112 1.0040 -0.4888 37 1 7.9571 1.9544 -1.4691 38 1 8.8894 1.6577 0.7709 39 1 7.3935 2.2811 1.5083 40 1 9.2287 3.8473 -0.3619 41 1 7.4468 4.1211 2.7510 42 1 8.6752 3.0773 3.5354 43 1 8.1625 5.5562 4.5473 44 1 9.8574 4.9704 4.4538 45 1 8.3523 6.7824 2.4878 46 1 9.9842 7.0163 3.1831 47 1 10.2211 9.1835 1.2431 48 1 7.7933 5.7681 0.3039 49 1 6.7589 4.6603 1.2380 50 1 7.2564 4.5845 -1.7739 51 1 5.7377 5.0336 -0.9560 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230569594.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:45 Heat of formation + Delta-G solvation = -15.352789 kcal Electronic energy + Delta-G solvation = -30169.927600 eV Core-core repulsion = 26264.067125 eV Total energy + Delta-G solvation = -3905.860475 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.58732 -40.07864 -38.89637 -37.66017 -34.83609 -34.46437 -33.80178 -32.70420 -31.46712 -31.08956 -29.11549 -28.07799 -26.60069 -25.93523 -24.56022 -23.90429 -22.47372 -21.76933 -20.78746 -19.87356 -19.36399 -18.60281 -18.13141 -17.79096 -17.00067 -16.84068 -16.53314 -16.37239 -15.94827 -15.71630 -15.63558 -15.28615 -14.90278 -14.56934 -14.35056 -14.08557 -13.98022 -13.83963 -13.47965 -13.43762 -13.26864 -13.17383 -12.92778 -12.81128 -12.73153 -12.57033 -12.41183 -12.13654 -12.05759 -11.82273 -11.72310 -11.69340 -11.55961 -11.46898 -11.23825 -11.16993 -10.88994 -10.78932 -10.59286 -10.42718 -9.67431 -8.69635 -7.79901 -5.14127 1.31769 1.46055 1.47721 1.53584 1.54059 1.82011 1.96478 2.52894 2.98471 3.37177 3.39841 3.64217 3.68523 3.85345 3.90908 3.98306 4.02208 4.09803 4.24104 4.25913 4.27075 4.29737 4.38042 4.41126 4.48381 4.55016 4.67274 4.71904 4.77639 4.83820 4.84011 4.90403 4.93353 5.01669 5.09167 5.11932 5.18424 5.24064 5.25447 5.28840 5.31560 5.55636 5.58384 5.69506 5.71654 5.75489 5.84332 6.01038 6.31980 6.42752 6.59970 7.11857 7.17765 7.88534 8.56301 9.31321 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017769 B = 0.002792 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.391035 B =10027.097181 C =10534.982059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.238 4.238 3 C 0.163 3.837 4 O -0.390 6.390 5 C 0.077 3.923 6 H 0.127 0.873 7 C -0.171 4.171 8 C 0.506 3.494 9 O -0.584 6.584 10 N -0.599 5.599 11 C 0.098 3.902 12 C -0.123 4.123 13 C -0.084 4.084 14 C 0.157 3.843 15 H 0.038 0.962 16 C -0.114 4.114 17 C -0.140 4.140 18 C 0.179 3.821 19 N -0.609 5.609 20 C -0.220 4.220 21 H 0.077 0.923 22 C -0.064 4.064 23 N -0.949 5.949 24 Si 0.964 3.036 25 H -0.279 1.279 26 H -0.302 1.302 27 H -0.278 1.278 28 C -0.101 4.101 29 C 0.121 3.879 30 H 0.251 0.749 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.049 0.951 36 H 0.123 0.877 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.050 0.950 41 H 0.067 0.933 42 H 0.093 0.907 43 H 0.073 0.927 44 H 0.063 0.937 45 H -0.011 1.011 46 H 0.026 0.974 47 H 0.242 0.758 48 H 0.044 0.956 49 H 0.053 0.947 50 H 0.064 0.936 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.967 -23.911 -0.588 25.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.238 4.238 3 C 0.088 3.912 4 O -0.309 6.309 5 C 0.017 3.983 6 H 0.144 0.856 7 C -0.229 4.229 8 C 0.294 3.706 9 O -0.464 6.464 10 N -0.333 5.333 11 C -0.023 4.023 12 C -0.161 4.161 13 C -0.104 4.104 14 C 0.051 3.949 15 H 0.056 0.944 16 C -0.151 4.151 17 C -0.178 4.178 18 C 0.054 3.946 19 N -0.333 5.333 20 C -0.349 4.349 21 H 0.095 0.905 22 C -0.257 4.257 23 N -0.598 5.598 24 Si 0.794 3.206 25 H -0.206 1.206 26 H -0.228 1.228 27 H -0.204 1.204 28 C -0.140 4.140 29 C -0.002 4.002 30 H 0.267 0.733 31 H 0.111 0.889 32 H 0.124 0.876 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.069 0.931 36 H 0.141 0.859 37 H 0.101 0.899 38 H 0.120 0.880 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.112 0.888 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.007 0.993 46 H 0.045 0.955 47 H 0.052 0.948 48 H 0.063 0.937 49 H 0.072 0.928 50 H 0.082 0.918 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.427 -23.156 -0.898 25.411 hybrid contribution 0.556 1.693 -0.682 1.908 sum -9.871 -21.463 -1.580 23.677 Atomic orbital electron populations 1.25872 0.96966 0.97283 0.98428 1.23204 0.95175 1.02936 1.02448 1.19504 0.84448 0.90657 0.96572 1.88082 1.20332 1.50515 1.72016 1.22057 0.82249 0.91115 1.02911 0.85596 1.22382 1.03098 1.01247 0.96134 1.21176 0.81749 0.91508 0.76127 1.90684 1.51688 1.54597 1.49390 1.48166 1.06913 1.07810 1.70373 1.22183 0.89780 0.91455 0.98836 1.21914 1.00743 0.95513 0.97946 1.21423 0.95357 0.94682 0.98983 1.21209 0.94100 0.85692 0.93871 0.94438 1.22621 0.99007 0.98418 0.95067 1.22887 1.00590 0.96994 0.97356 1.21129 0.94490 0.92326 0.86660 1.44693 1.54071 1.06034 1.28509 1.19187 1.16036 0.90111 1.09599 0.90491 1.25569 1.01955 0.96824 1.01373 1.70141 1.46117 1.01744 1.41839 0.85363 0.79049 0.76542 0.79684 1.20559 1.22831 1.20379 1.21620 0.96574 0.99779 0.95994 1.21426 0.98534 0.81873 0.98387 0.73277 0.88923 0.87569 0.88417 0.88082 0.93133 0.85926 0.89889 0.88045 0.90691 0.93149 0.91418 0.88818 0.90872 0.91828 0.99299 0.95520 0.94826 0.93694 0.92811 0.91780 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 19.25 74.32 1.43 -1.39 16 2 C -0.24 -4.74 13.73 31.12 0.43 -4.31 16 3 C 0.16 2.57 6.22 70.18 0.44 3.01 16 4 O -0.39 -9.40 9.51 -130.22 -1.24 -10.64 16 5 C 0.08 1.41 2.28 29.85 0.07 1.48 16 6 H 0.13 1.31 6.89 -2.39 -0.02 1.30 16 7 C -0.17 -2.11 9.14 71.98 0.66 -1.45 16 8 C 0.51 14.46 7.05 87.65 0.62 15.07 16 9 O -0.58 -23.50 15.98 15.74 0.25 -23.24 16 10 N -0.60 -15.33 2.98 -819.76 -2.44 -17.77 16 11 C 0.10 1.60 5.21 86.22 0.45 2.05 16 12 C -0.12 -2.34 5.07 30.53 0.15 -2.19 16 13 C -0.08 -2.59 1.91 -10.77 -0.02 -2.61 16 14 C 0.16 5.61 2.96 45.34 0.13 5.74 16 15 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 16 C -0.11 -3.40 5.21 31.78 0.17 -3.23 16 17 C -0.14 -4.97 7.09 31.99 0.23 -4.74 16 18 C 0.18 8.70 5.41 86.86 0.47 9.17 16 19 N -0.61 -29.15 2.24 -668.28 -1.50 -30.65 16 20 C -0.22 -11.72 9.86 84.03 0.83 -10.89 16 21 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 22 C -0.06 -3.60 5.47 84.86 0.46 -3.14 16 23 N -0.95 -57.17 10.57 21.65 0.23 -56.94 16 24 Si 0.96 45.73 29.55 68.60 2.03 47.76 16 25 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 26 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 27 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 28 C -0.10 -3.63 4.93 30.67 0.15 -3.48 16 29 C 0.12 3.98 6.42 86.36 0.55 4.53 16 30 H 0.25 2.06 7.80 -4.41 -0.03 2.02 16 31 H 0.09 1.09 8.08 -2.38 -0.02 1.07 16 32 H 0.11 0.95 7.90 -2.39 -0.02 0.93 16 33 H 0.10 0.83 5.90 -2.39 -0.01 0.82 16 34 H 0.10 0.66 7.90 -2.39 -0.02 0.64 16 35 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.12 1.01 4.67 -2.39 -0.01 1.00 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.07 1.35 7.06 -2.39 -0.02 1.34 16 40 H 0.05 1.75 8.06 -2.39 -0.02 1.73 16 41 H 0.07 2.02 5.50 -2.39 -0.01 2.00 16 42 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 45 H -0.01 -0.60 8.06 -2.39 -0.02 -0.62 16 46 H 0.03 1.48 6.92 -2.39 -0.02 1.47 16 47 H 0.24 14.47 8.31 -92.71 -0.77 13.70 16 48 H 0.04 2.09 7.51 -2.38 -0.02 2.07 16 49 H 0.05 1.92 6.17 -2.39 -0.01 1.91 16 50 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 51 H 0.06 2.31 7.03 -2.38 -0.02 2.29 16 Total: -1.00 -80.30 396.09 5.45 -74.85 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.90 Total: 13.01 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 7.22 Total: 3.63 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -3.71 Total: -105.36 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -0.99 Total: -33.89 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -80.30 5.45 -74.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230569594.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.499 kcal (2) G-P(sol) polarization free energy of solvation -80.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds