Wall clock time and date at job start Tue Mar 31 2020 17:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42898 * 109.46690 * 254.05621 * 3 2 1 5 5 C 1.42906 * 113.99938 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.46987 * 29.99477 * 5 4 3 7 7 C 1.53011 * 109.46708 * 270.00006 * 5 4 3 8 8 C 1.50694 * 109.47345 * 150.00045 * 5 4 3 9 9 O 1.21283 * 120.00094 * 4.99420 * 8 5 4 10 10 N 1.34781 * 119.99954 * 184.99959 * 8 5 4 11 11 C 1.46922 * 120.62968 * 179.97438 * 10 8 5 12 12 C 1.53192 * 108.77505 * 233.62859 * 11 10 8 13 13 C 1.53042 * 109.31121 * 305.36682 * 12 11 10 14 14 C 1.53005 * 109.45487 * 181.38442 * 13 12 11 15 15 H 1.08996 * 110.00140 * 304.40829 * 14 13 12 16 16 C 1.54343 * 109.98803 * 183.37378 * 14 13 12 17 17 C 1.55152 * 103.01729 * 218.66894 * 16 14 13 18 18 C 1.54899 * 101.58839 * 35.30739 * 17 16 14 19 19 N 1.47027 * 109.88217 * 65.51392 * 14 13 12 20 20 C 1.36937 * 125.64256 * 298.38413 * 19 14 13 21 21 H 1.08004 * 119.99647 * 138.03544 * 20 19 14 22 22 C 1.38814 * 120.00287 * 317.76118 * 20 19 14 23 23 N 1.31621 * 119.99658 * 169.40123 * 22 20 19 24 24 Si 1.86799 * 120.00001 * 349.39882 * 22 20 19 25 25 H 1.48493 * 109.46944 * 93.02375 * 24 22 20 26 26 H 1.48492 * 109.47069 * 213.02673 * 24 22 20 27 27 H 1.48503 * 109.46908 * 333.02575 * 24 22 20 28 28 C 1.53037 * 109.52819 * 61.37282 * 13 12 11 29 29 C 1.46922 * 120.63009 * 0.02562 * 10 8 5 30 30 H 4.38438 * 5.44313 * 179.97438 * 4 1 2 31 31 H 1.08994 * 109.46740 * 134.06022 * 3 2 1 32 32 H 1.08997 * 109.47318 * 14.05310 * 3 2 1 33 33 H 1.08999 * 109.46829 * 299.99996 * 7 5 4 34 34 H 1.09001 * 109.46771 * 59.99595 * 7 5 4 35 35 H 1.08996 * 109.46842 * 179.97438 * 7 5 4 36 36 H 1.09002 * 109.58714 * 113.84178 * 11 10 8 37 37 H 1.08997 * 109.70659 * 353.48943 * 11 10 8 38 38 H 1.08998 * 109.49931 * 185.41682 * 12 11 10 39 39 H 1.08994 * 109.49741 * 65.32198 * 12 11 10 40 40 H 1.08998 * 109.45999 * 301.35574 * 13 12 11 41 41 H 1.08997 * 110.84727 * 100.19975 * 16 14 13 42 42 H 1.09002 * 110.66723 * 337.04729 * 16 14 13 43 43 H 1.09000 * 111.00575 * 277.22514 * 17 16 14 44 44 H 1.09008 * 111.00495 * 153.38408 * 17 16 14 45 45 H 1.09002 * 110.37104 * 204.15328 * 18 17 16 46 46 H 1.09001 * 110.46153 * 81.87709 * 18 17 16 47 47 H 0.97001 * 119.99543 * 179.97438 * 23 22 20 48 48 H 1.09001 * 109.49579 * 58.57910 * 28 13 12 49 49 H 1.08995 * 109.49705 * 178.67398 * 28 13 12 50 50 H 1.09006 * 109.59099 * 246.15870 * 29 10 8 51 51 H 1.09008 * 109.58841 * 6.58638 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1221 0.3710 1.2955 5 6 4.5467 0.4032 1.4039 6 1 4.9789 0.6618 0.4373 7 6 5.0563 -0.9725 1.8387 8 6 4.9495 1.4342 2.4264 9 8 4.1006 2.0136 3.0703 10 7 6.2532 1.7126 2.6253 11 6 6.6614 2.7157 3.6182 12 6 7.5710 3.7425 2.9364 13 6 8.7365 3.0164 2.2606 14 6 9.6659 4.0417 1.6078 15 1 9.1025 4.6689 0.9170 16 6 10.8000 3.3188 0.8505 17 6 12.0355 4.2133 1.1347 18 6 11.7547 4.6801 2.5847 19 7 10.2948 4.8763 2.6420 20 6 9.6333 5.6958 3.5173 21 1 9.9347 5.7344 4.5537 22 6 8.5791 6.4811 3.0713 23 7 7.8116 7.1066 3.9387 24 14 8.2498 6.6503 1.2404 25 1 7.2571 5.6293 0.8197 26 1 7.7157 8.0065 0.9568 27 1 9.5151 6.4496 0.4893 28 6 8.1953 2.0651 1.1909 29 6 7.2930 1.0195 1.8526 30 1 -1.0500 0.0001 -0.0002 31 1 3.0090 0.7155 -0.7385 32 1 3.0099 -0.9960 -0.2495 33 1 4.6240 -1.2312 2.8053 34 1 4.7648 -1.7183 1.0990 35 1 6.1428 -0.9481 1.9209 36 1 7.2036 2.2282 4.4285 37 1 5.7800 3.2168 4.0181 38 1 7.9583 4.4371 3.6818 39 1 7.0015 4.2924 2.1873 40 1 9.2909 2.4468 3.0064 41 1 10.5895 3.2800 -0.2182 42 1 10.9503 2.3156 1.2493 43 1 12.0695 5.0613 0.4508 44 1 12.9575 3.6341 1.0823 45 1 12.2718 5.6179 2.7882 46 1 12.0630 3.9154 3.2976 47 1 7.0752 7.6556 3.6270 48 1 7.6198 2.6310 0.4584 49 1 9.0269 1.5657 0.6939 50 1 7.8869 0.3934 2.5184 51 1 6.8270 0.4013 1.0852 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230569595.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:50 Heat of formation + Delta-G solvation = 12.717999 kcal Electronic energy + Delta-G solvation = -30638.901875 eV Core-core repulsion = 26734.258641 eV Total energy + Delta-G solvation = -3904.643235 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.37548 -38.82888 -37.85990 -36.35871 -33.80977 -33.05618 -32.76648 -31.61755 -30.31593 -29.78835 -27.98033 -27.36683 -25.17754 -24.42718 -23.14197 -22.89207 -20.52404 -20.23411 -19.80726 -19.21753 -18.66379 -17.32470 -16.80281 -16.77270 -15.99951 -15.67720 -15.38678 -14.96210 -14.81745 -14.63496 -13.90057 -13.76086 -13.64400 -13.43845 -13.31236 -13.10250 -12.99251 -12.68540 -12.43709 -12.27285 -12.12986 -11.92957 -11.74374 -11.48265 -11.40328 -11.10508 -10.94932 -10.87162 -10.78376 -10.68921 -10.58034 -10.37714 -10.30531 -10.04691 -9.94790 -9.77124 -9.57191 -9.35756 -9.25974 -8.41944 -8.27345 -6.71523 -6.04196 -3.51914 2.16103 2.56027 2.74838 3.05415 3.29047 3.43230 3.46843 3.76695 4.24730 4.45515 4.46734 4.61667 4.77024 4.84322 4.88660 5.02588 5.09999 5.14771 5.18313 5.26692 5.33216 5.40343 5.42622 5.46311 5.55145 5.63975 5.66946 5.76537 5.84813 5.87857 5.91047 6.04420 6.09946 6.16098 6.21968 6.29684 6.34578 6.39376 6.50337 6.59346 6.67159 6.79640 6.82702 6.85886 6.90947 7.18069 7.32189 7.58336 7.61117 8.00336 8.31724 8.36047 8.84600 9.60691 10.26032 11.09756 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015438 B = 0.003395 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.230627 B = 8246.580128 C = 8928.039283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.191 4.191 3 C 0.169 3.831 4 O -0.350 6.350 5 C 0.071 3.929 6 H 0.087 0.913 7 C -0.178 4.178 8 C 0.512 3.488 9 O -0.522 6.522 10 N -0.604 5.604 11 C 0.115 3.885 12 C -0.151 4.151 13 C -0.082 4.082 14 C 0.150 3.850 15 H 0.033 0.967 16 C -0.126 4.126 17 C -0.137 4.137 18 C 0.130 3.870 19 N -0.604 5.604 20 C -0.251 4.251 21 H 0.081 0.919 22 C 0.048 3.952 23 N -0.900 5.900 24 Si 0.885 3.115 25 H -0.279 1.279 26 H -0.305 1.305 27 H -0.270 1.270 28 C -0.137 4.137 29 C 0.104 3.896 30 H 0.222 0.778 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.141 0.859 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.047 0.953 46 H 0.024 0.976 47 H 0.266 0.734 48 H 0.060 0.940 49 H 0.073 0.927 50 H 0.071 0.929 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.840 -17.564 -9.850 20.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.191 4.191 3 C 0.093 3.907 4 O -0.269 6.269 5 C 0.010 3.990 6 H 0.105 0.895 7 C -0.235 4.235 8 C 0.298 3.702 9 O -0.398 6.398 10 N -0.339 5.339 11 C -0.006 4.006 12 C -0.188 4.188 13 C -0.103 4.103 14 C 0.044 3.956 15 H 0.050 0.950 16 C -0.164 4.164 17 C -0.176 4.176 18 C 0.005 3.995 19 N -0.329 5.329 20 C -0.379 4.379 21 H 0.099 0.901 22 C -0.154 4.154 23 N -0.540 5.540 24 Si 0.717 3.283 25 H -0.207 1.207 26 H -0.233 1.233 27 H -0.195 1.195 28 C -0.175 4.175 29 C -0.019 4.019 30 H 0.239 0.761 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.158 0.842 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.042 0.958 47 H 0.076 0.924 48 H 0.079 0.921 49 H 0.091 0.909 50 H 0.089 0.911 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.603 -17.004 -9.224 19.519 hybrid contribution -0.358 0.090 -1.434 1.480 sum -2.961 -16.914 -10.657 20.209 Atomic orbital electron populations 1.24961 0.95874 1.00527 0.97669 1.22437 0.93804 1.00787 1.02082 1.19179 0.85106 1.00242 0.86128 1.88129 1.19137 1.89833 1.29777 1.21929 0.82573 0.95483 0.98995 0.89480 1.22425 1.02490 0.95174 1.03447 1.20203 0.82612 0.83284 0.84125 1.90720 1.49633 1.51282 1.48120 1.48195 1.04674 1.40996 1.40076 1.21822 0.99737 0.89128 0.89892 1.22649 0.94974 0.98035 1.03133 1.21471 0.96686 0.95758 0.96347 1.21283 0.92533 0.90753 0.91039 0.95014 1.22594 0.95973 0.98660 0.99156 1.22765 0.96872 0.99038 0.98913 1.21720 0.86713 0.98094 0.92990 1.44637 1.00231 1.48431 1.39647 1.18387 1.13386 1.15736 0.90355 0.90104 1.25528 0.97976 0.95026 0.96908 1.69754 1.18169 1.32612 1.33496 0.86945 0.77967 0.75813 0.87589 1.20665 1.23342 1.19536 1.22098 0.98799 0.97553 0.99092 1.21927 0.90012 0.94874 0.95076 0.76100 0.90656 0.90660 0.90918 0.91264 0.89976 0.91839 0.89459 0.84182 0.92750 0.91418 0.92292 0.91481 0.91940 0.92033 0.93498 0.95805 0.92397 0.92079 0.90885 0.91090 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 19.25 29.55 0.57 -1.18 16 2 C -0.19 -2.26 13.73 -37.12 -0.51 -2.77 16 3 C 0.17 1.78 6.22 34.37 0.21 1.99 16 4 O -0.35 -5.04 9.48 -55.09 -0.52 -5.56 16 5 C 0.07 0.88 2.30 -27.88 -0.06 0.82 16 6 H 0.09 0.85 7.08 -51.93 -0.37 0.48 16 7 C -0.18 -1.62 9.10 37.16 0.34 -1.28 16 8 C 0.51 8.64 7.12 -10.99 -0.08 8.56 16 9 O -0.52 -11.34 15.92 -14.30 -0.23 -11.57 16 10 N -0.60 -9.49 2.97 -172.80 -0.51 -10.00 16 11 C 0.12 2.12 6.43 -3.71 -0.02 2.10 16 12 C -0.15 -3.13 3.84 -26.61 -0.10 -3.23 16 13 C -0.08 -1.45 1.78 -90.58 -0.16 -1.61 16 14 C 0.15 2.93 1.91 -66.94 -0.13 2.81 16 15 H 0.03 0.72 3.50 -51.93 -0.18 0.53 16 16 C -0.13 -1.95 5.33 -24.89 -0.13 -2.08 16 17 C -0.14 -2.17 7.09 -24.59 -0.17 -2.34 16 18 C 0.13 2.46 7.23 -2.54 -0.02 2.44 16 19 N -0.60 -13.51 2.60 -162.56 -0.42 -13.94 16 20 C -0.25 -6.57 8.28 -15.06 -0.12 -6.70 16 21 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 22 C 0.05 1.30 3.66 -17.43 -0.06 1.23 16 23 N -0.90 -26.22 13.97 55.49 0.78 -25.44 16 24 Si 0.89 22.21 23.18 -169.99 -3.94 18.27 16 25 H -0.28 -6.88 5.98 56.52 0.34 -6.54 16 26 H -0.31 -7.92 7.11 56.52 0.40 -7.52 16 27 H -0.27 -6.65 6.75 56.52 0.38 -6.27 16 28 C -0.14 -1.87 5.09 -26.64 -0.14 -2.00 16 29 C 0.10 1.22 4.97 -3.74 -0.02 1.20 16 30 H 0.22 1.34 7.80 -54.09 -0.42 0.92 16 31 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 32 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.47 7.87 -51.93 -0.41 0.06 16 35 H 0.08 0.63 5.41 -51.93 -0.28 0.35 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.09 1.81 7.01 -51.93 -0.36 1.44 16 38 H 0.14 3.43 4.34 -51.93 -0.23 3.20 16 39 H 0.05 1.26 5.71 -51.93 -0.30 0.97 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.91 7.36 -51.93 -0.38 0.53 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.07 0.82 6.79 -51.93 -0.35 0.46 16 50 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.08 0.69 4.66 -51.92 -0.24 0.45 16 LS Contribution 382.58 15.07 5.77 5.77 Total: -1.00 -33.58 382.58 -7.92 -41.50 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -8.22 Total: 3.00 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -0.61 Total: -2.03 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.16 Total: -49.38 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.75 Total: -17.13 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -3.94 Total: 18.27 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.58 -7.92 -41.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230569595.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.218 kcal (2) G-P(sol) polarization free energy of solvation -33.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds