Wall clock time and date at job start Tue Mar 31 2020 17:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42898 * 109.46690 * 254.05621 * 3 2 1 5 5 C 1.42906 * 113.99938 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.46987 * 29.99477 * 5 4 3 7 7 C 1.53011 * 109.46708 * 270.00006 * 5 4 3 8 8 C 1.50694 * 109.47345 * 150.00045 * 5 4 3 9 9 O 1.21283 * 120.00094 * 4.99420 * 8 5 4 10 10 N 1.34781 * 119.99954 * 184.99959 * 8 5 4 11 11 C 1.46922 * 120.62968 * 179.97438 * 10 8 5 12 12 C 1.53192 * 108.77505 * 233.62859 * 11 10 8 13 13 C 1.53042 * 109.31121 * 305.36682 * 12 11 10 14 14 C 1.53005 * 109.45487 * 181.38442 * 13 12 11 15 15 H 1.08996 * 110.00140 * 304.40829 * 14 13 12 16 16 C 1.54343 * 109.98803 * 183.37378 * 14 13 12 17 17 C 1.55152 * 103.01729 * 218.66894 * 16 14 13 18 18 C 1.54899 * 101.58839 * 35.30739 * 17 16 14 19 19 N 1.47027 * 109.88217 * 65.51392 * 14 13 12 20 20 C 1.36937 * 125.64256 * 298.38413 * 19 14 13 21 21 H 1.08004 * 119.99647 * 138.03544 * 20 19 14 22 22 C 1.38814 * 120.00287 * 317.76118 * 20 19 14 23 23 N 1.31621 * 119.99658 * 169.40123 * 22 20 19 24 24 Si 1.86799 * 120.00001 * 349.39882 * 22 20 19 25 25 H 1.48493 * 109.46944 * 93.02375 * 24 22 20 26 26 H 1.48492 * 109.47069 * 213.02673 * 24 22 20 27 27 H 1.48503 * 109.46908 * 333.02575 * 24 22 20 28 28 C 1.53037 * 109.52819 * 61.37282 * 13 12 11 29 29 C 1.46922 * 120.63009 * 0.02562 * 10 8 5 30 30 H 4.38438 * 5.44313 * 179.97438 * 4 1 2 31 31 H 1.08994 * 109.46740 * 134.06022 * 3 2 1 32 32 H 1.08997 * 109.47318 * 14.05310 * 3 2 1 33 33 H 1.08999 * 109.46829 * 299.99996 * 7 5 4 34 34 H 1.09001 * 109.46771 * 59.99595 * 7 5 4 35 35 H 1.08996 * 109.46842 * 179.97438 * 7 5 4 36 36 H 1.09002 * 109.58714 * 113.84178 * 11 10 8 37 37 H 1.08997 * 109.70659 * 353.48943 * 11 10 8 38 38 H 1.08998 * 109.49931 * 185.41682 * 12 11 10 39 39 H 1.08994 * 109.49741 * 65.32198 * 12 11 10 40 40 H 1.08998 * 109.45999 * 301.35574 * 13 12 11 41 41 H 1.08997 * 110.84727 * 100.19975 * 16 14 13 42 42 H 1.09002 * 110.66723 * 337.04729 * 16 14 13 43 43 H 1.09000 * 111.00575 * 277.22514 * 17 16 14 44 44 H 1.09008 * 111.00495 * 153.38408 * 17 16 14 45 45 H 1.09002 * 110.37104 * 204.15328 * 18 17 16 46 46 H 1.09001 * 110.46153 * 81.87709 * 18 17 16 47 47 H 0.97001 * 119.99543 * 179.97438 * 23 22 20 48 48 H 1.09001 * 109.49579 * 58.57910 * 28 13 12 49 49 H 1.08995 * 109.49705 * 178.67398 * 28 13 12 50 50 H 1.09006 * 109.59099 * 246.15870 * 29 10 8 51 51 H 1.09008 * 109.58841 * 6.58638 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1221 0.3710 1.2955 5 6 4.5467 0.4032 1.4039 6 1 4.9789 0.6618 0.4373 7 6 5.0563 -0.9725 1.8387 8 6 4.9495 1.4342 2.4264 9 8 4.1006 2.0136 3.0703 10 7 6.2532 1.7126 2.6253 11 6 6.6614 2.7157 3.6182 12 6 7.5710 3.7425 2.9364 13 6 8.7365 3.0164 2.2606 14 6 9.6659 4.0417 1.6078 15 1 9.1025 4.6689 0.9170 16 6 10.8000 3.3188 0.8505 17 6 12.0355 4.2133 1.1347 18 6 11.7547 4.6801 2.5847 19 7 10.2948 4.8763 2.6420 20 6 9.6333 5.6958 3.5173 21 1 9.9347 5.7344 4.5537 22 6 8.5791 6.4811 3.0713 23 7 7.8116 7.1066 3.9387 24 14 8.2498 6.6503 1.2404 25 1 7.2571 5.6293 0.8197 26 1 7.7157 8.0065 0.9568 27 1 9.5151 6.4496 0.4893 28 6 8.1953 2.0651 1.1909 29 6 7.2930 1.0195 1.8526 30 1 -1.0500 0.0001 -0.0002 31 1 3.0090 0.7155 -0.7385 32 1 3.0099 -0.9960 -0.2495 33 1 4.6240 -1.2312 2.8053 34 1 4.7648 -1.7183 1.0990 35 1 6.1428 -0.9481 1.9209 36 1 7.2036 2.2282 4.4285 37 1 5.7800 3.2168 4.0181 38 1 7.9583 4.4371 3.6818 39 1 7.0015 4.2924 2.1873 40 1 9.2909 2.4468 3.0064 41 1 10.5895 3.2800 -0.2182 42 1 10.9503 2.3156 1.2493 43 1 12.0695 5.0613 0.4508 44 1 12.9575 3.6341 1.0823 45 1 12.2718 5.6179 2.7882 46 1 12.0630 3.9154 3.2976 47 1 7.0752 7.6556 3.6270 48 1 7.6198 2.6310 0.4584 49 1 9.0269 1.5657 0.6939 50 1 7.8869 0.3934 2.5184 51 1 6.8270 0.4013 1.0852 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230569595.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:49 Heat of formation + Delta-G solvation = -9.828046 kcal Electronic energy + Delta-G solvation = -30639.879545 eV Core-core repulsion = 26734.258641 eV Total energy + Delta-G solvation = -3905.620905 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.60870 -40.17309 -38.96897 -37.74251 -34.89715 -34.66296 -34.11449 -32.74322 -31.84356 -31.15108 -29.34328 -28.12302 -26.58055 -25.99484 -24.32915 -24.14761 -21.90803 -21.60181 -21.41218 -20.35716 -19.59958 -18.70771 -18.26559 -17.85745 -17.29118 -17.05360 -16.59664 -16.36162 -16.01098 -15.68565 -15.37148 -15.27791 -14.97798 -14.77531 -14.56741 -14.39794 -14.29616 -13.84245 -13.58082 -13.56810 -13.45028 -13.19362 -13.06072 -12.99885 -12.71248 -12.60039 -12.35739 -12.07637 -12.02946 -11.96100 -11.81418 -11.74170 -11.65598 -11.60078 -11.39705 -11.11037 -10.90302 -10.84341 -10.52437 -10.31823 -9.66206 -8.58425 -8.19559 -5.60667 1.24150 1.29868 1.31936 1.41611 1.50158 1.77942 1.95565 2.37493 2.95263 3.11353 3.34014 3.43221 3.60252 3.79833 3.85923 3.96020 3.96832 4.02411 4.13328 4.20816 4.21735 4.25132 4.35382 4.42879 4.43509 4.52726 4.60374 4.67024 4.73036 4.77690 4.81898 4.87481 4.88883 4.97645 5.01904 5.03939 5.11356 5.17457 5.20762 5.23090 5.34961 5.40064 5.41998 5.54200 5.67879 5.80081 5.96737 6.01548 6.20601 6.41385 6.55981 6.93267 7.10186 7.57860 8.27998 8.98901 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015438 B = 0.003395 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.230627 B = 8246.580128 C = 8928.039283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.239 4.239 3 C 0.163 3.837 4 O -0.390 6.390 5 C 0.077 3.923 6 H 0.121 0.879 7 C -0.171 4.171 8 C 0.499 3.501 9 O -0.588 6.588 10 N -0.601 5.601 11 C 0.123 3.877 12 C -0.141 4.141 13 C -0.077 4.077 14 C 0.137 3.863 15 H 0.005 0.995 16 C -0.115 4.115 17 C -0.127 4.127 18 C 0.120 3.880 19 N -0.623 5.623 20 C -0.224 4.224 21 H 0.043 0.957 22 C 0.004 3.996 23 N -0.947 5.947 24 Si 0.938 3.062 25 H -0.279 1.279 26 H -0.322 1.322 27 H -0.257 1.257 28 C -0.130 4.130 29 C 0.098 3.902 30 H 0.253 0.747 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.052 0.948 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.048 0.952 38 H 0.095 0.905 39 H 0.019 0.981 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.052 0.948 44 H 0.102 0.898 45 H 0.031 0.969 46 H 0.037 0.963 47 H 0.259 0.741 48 H 0.047 0.953 49 H 0.117 0.883 50 H 0.099 0.901 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.231 -22.212 -13.423 25.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.240 4.240 3 C 0.088 3.912 4 O -0.310 6.310 5 C 0.016 3.984 6 H 0.139 0.861 7 C -0.228 4.228 8 C 0.288 3.712 9 O -0.468 6.468 10 N -0.335 5.335 11 C 0.001 3.999 12 C -0.179 4.179 13 C -0.097 4.097 14 C 0.032 3.968 15 H 0.023 0.977 16 C -0.153 4.153 17 C -0.165 4.165 18 C -0.004 4.004 19 N -0.349 5.349 20 C -0.354 4.354 21 H 0.061 0.939 22 C -0.193 4.193 23 N -0.592 5.592 24 Si 0.769 3.231 25 H -0.206 1.206 26 H -0.252 1.252 27 H -0.181 1.181 28 C -0.169 4.169 29 C -0.022 4.022 30 H 0.269 0.731 31 H 0.105 0.895 32 H 0.128 0.872 33 H 0.071 0.929 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.113 0.887 39 H 0.038 0.962 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.118 0.882 43 H 0.071 0.929 44 H 0.120 0.880 45 H 0.050 0.950 46 H 0.055 0.945 47 H 0.068 0.932 48 H 0.066 0.934 49 H 0.135 0.865 50 H 0.117 0.883 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.456 -21.712 -12.850 25.234 hybrid contribution -0.979 1.537 -0.218 1.835 sum -1.436 -20.175 -13.068 24.081 Atomic orbital electron populations 1.25882 0.96942 0.99324 0.96127 1.23187 0.95151 1.02090 1.03525 1.19496 0.84597 1.02379 0.84725 1.88079 1.20330 1.90419 1.32135 1.22054 0.82274 0.95448 0.98583 0.86111 1.22441 1.03511 0.93494 1.03328 1.21309 0.82135 0.83482 0.84315 1.90686 1.51461 1.53882 1.50802 1.48263 1.05674 1.40041 1.39529 1.21444 0.97791 0.89687 0.91008 1.22349 0.96313 0.97973 1.01218 1.21406 0.94874 0.95900 0.97559 1.21502 0.94369 0.90818 0.90102 0.97741 1.22630 0.93182 0.99362 1.00102 1.22725 0.98968 0.99324 0.95481 1.21905 0.84269 0.98014 0.96205 1.44816 1.02162 1.48637 1.39263 1.18129 1.12474 1.15180 0.89580 0.93948 1.25902 0.98305 0.95591 0.99514 1.69880 1.19420 1.34907 1.34979 0.86114 0.78078 0.74528 0.84363 1.20567 1.25237 1.18149 1.22086 1.00313 0.97022 0.97431 1.22360 0.89134 0.94563 0.96183 0.73103 0.89483 0.87230 0.92923 0.88026 0.87788 0.90455 0.93358 0.88684 0.96213 0.90667 0.89771 0.88236 0.92904 0.87967 0.95038 0.94477 0.93205 0.93421 0.86487 0.88289 0.86028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 19.25 74.32 1.43 -1.71 16 2 C -0.24 -5.40 13.73 31.13 0.43 -4.97 16 3 C 0.16 3.07 6.22 70.18 0.44 3.51 16 4 O -0.39 -10.78 9.48 -129.99 -1.23 -12.01 16 5 C 0.08 1.69 2.30 29.85 0.07 1.76 16 6 H 0.12 1.79 7.08 -2.39 -0.02 1.77 16 7 C -0.17 -2.36 9.10 71.99 0.66 -1.70 16 8 C 0.50 16.72 7.12 87.65 0.62 17.35 16 9 O -0.59 -27.03 15.92 15.95 0.25 -26.77 16 10 N -0.60 -18.16 2.97 -819.01 -2.43 -20.59 16 11 C 0.12 4.74 6.43 86.36 0.56 5.29 16 12 C -0.14 -6.05 3.84 30.67 0.12 -5.93 16 13 C -0.08 -2.55 1.78 -10.77 -0.02 -2.57 16 14 C 0.14 5.06 1.91 45.35 0.09 5.15 16 15 H 0.01 0.22 3.50 -2.39 -0.01 0.21 16 16 C -0.12 -2.91 5.33 31.79 0.17 -2.74 16 17 C -0.13 -3.41 7.09 31.98 0.23 -3.18 16 18 C 0.12 4.32 7.23 86.85 0.63 4.95 16 19 N -0.62 -27.68 2.60 -668.22 -1.74 -29.42 16 20 C -0.22 -12.30 8.28 84.03 0.70 -11.61 16 21 H 0.04 2.62 8.06 -2.91 -0.02 2.60 16 22 C 0.00 0.23 3.66 84.86 0.31 0.54 16 23 N -0.95 -59.39 13.97 21.65 0.30 -59.08 16 24 Si 0.94 48.02 23.18 68.60 1.59 49.61 16 25 H -0.28 -14.02 5.98 99.48 0.59 -13.42 16 26 H -0.32 -17.22 7.11 99.48 0.71 -16.51 16 27 H -0.26 -12.38 6.75 99.48 0.67 -11.71 16 28 C -0.13 -2.93 5.09 30.65 0.16 -2.77 16 29 C 0.10 1.82 4.97 86.35 0.43 2.25 16 30 H 0.25 2.53 7.80 -4.42 -0.03 2.50 16 31 H 0.09 1.36 8.08 -2.39 -0.02 1.34 16 32 H 0.11 1.23 7.87 -2.39 -0.02 1.21 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.10 0.80 7.87 -2.39 -0.02 0.78 16 35 H 0.10 0.95 5.41 -2.39 -0.01 0.94 16 36 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.05 2.20 7.01 -2.39 -0.02 2.19 16 38 H 0.10 4.98 4.34 -2.39 -0.01 4.97 16 39 H 0.02 0.95 5.71 -2.39 -0.01 0.93 16 40 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.10 1.93 7.36 -2.39 -0.02 1.91 16 43 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 45 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 48 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.12 1.70 6.79 -2.39 -0.02 1.69 16 50 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 51 H 0.12 1.29 4.66 -2.38 -0.01 1.28 16 Total: -1.00 -85.15 382.58 4.51 -80.65 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.77 Total: 14.01 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 7.00 Total: 3.61 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -3.87 Total: -109.09 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -0.98 Total: -38.78 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 1.59 Total: 49.61 kcal Total: -85.15 4.51 -80.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230569595.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.818 kcal (2) G-P(sol) polarization free energy of solvation -85.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds