Wall clock time and date at job start Tue Mar 31 2020 18:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.46946 * 2 1 4 4 C 1.46900 * 110.99897 * 164.34889 * 3 2 1 5 5 C 1.50699 * 109.46815 * 287.67779 * 4 3 2 6 6 C 1.38289 * 119.92367 * 90.00164 * 5 4 3 7 7 C 1.38106 * 120.07260 * 180.24567 * 6 5 4 8 8 C 1.38908 * 119.92466 * 359.46198 * 7 6 5 9 9 N 1.39679 * 120.07620 * 180.28872 * 8 7 6 10 10 C 1.46494 * 120.00498 * 180.24663 * 9 8 7 11 11 C 1.46504 * 119.99404 * 0.24965 * 9 8 7 12 12 C 1.50703 * 109.47129 * 90.00369 * 11 9 8 13 13 H 1.08000 * 119.99876 * 359.97438 * 12 11 9 14 14 C 1.37874 * 119.99933 * 179.97438 * 12 11 9 15 15 N 1.31523 * 119.99873 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00258 * 359.97438 * 14 12 11 17 17 H 1.48491 * 109.47570 * 89.99888 * 16 14 12 18 18 H 1.48500 * 109.47179 * 210.00124 * 16 14 12 19 19 H 1.48503 * 109.46894 * 329.99717 * 16 14 12 20 20 C 1.38911 * 119.85412 * 0.53466 * 8 7 6 21 21 C 1.38110 * 119.92138 * 359.73642 * 20 8 7 22 22 C 1.46900 * 111.00115 * 288.30231 * 3 2 1 23 23 H 1.09001 * 109.46892 * 58.24089 * 22 3 2 24 24 C 1.53001 * 109.47263 * 178.24083 * 22 3 2 25 25 C 1.50701 * 109.46959 * 298.24233 * 22 3 2 26 26 O 1.20819 * 120.00080 * 342.53724 * 25 22 3 27 27 O 1.34229 * 120.00040 * 162.54491 * 25 22 3 28 28 C 1.45199 * 117.00155 * 179.97438 * 27 25 22 29 29 H 1.09007 * 109.47281 * 307.32542 * 1 2 3 30 30 H 1.08997 * 109.47374 * 67.32859 * 1 2 3 31 31 H 1.08999 * 109.46911 * 187.32684 * 1 2 3 32 32 H 1.08998 * 109.47178 * 240.00571 * 2 1 3 33 33 H 1.09001 * 109.47487 * 120.00165 * 2 1 3 34 34 H 1.09004 * 109.46846 * 167.68305 * 4 3 2 35 35 H 1.08992 * 109.47132 * 47.68073 * 4 3 2 36 36 H 1.07997 * 119.96334 * 359.97438 * 6 5 4 37 37 H 1.08002 * 120.03659 * 179.72029 * 7 6 5 38 38 H 1.09008 * 109.46815 * 90.00021 * 10 9 8 39 39 H 1.08997 * 109.47346 * 209.99997 * 10 9 8 40 40 H 1.09008 * 109.46865 * 330.00619 * 10 9 8 41 41 H 1.09003 * 109.46883 * 209.99649 * 11 9 8 42 42 H 1.08994 * 109.47671 * 329.99797 * 11 9 8 43 43 H 0.97003 * 119.99849 * 180.02562 * 15 14 12 44 44 H 1.07998 * 120.03968 * 179.70580 * 20 8 7 45 45 H 1.07995 * 119.95954 * 179.97438 * 21 20 8 46 46 H 1.09007 * 109.46995 * 59.99750 * 24 22 3 47 47 H 1.08998 * 109.47474 * 179.97438 * 24 22 3 48 48 H 1.08997 * 109.46923 * 300.00300 * 24 22 3 49 49 H 1.08996 * 109.47034 * 179.97438 * 28 27 25 50 50 H 1.08998 * 109.47402 * 299.99914 * 28 27 25 51 51 H 1.09000 * 109.47196 * 59.99934 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4401 1.4412 0.3700 5 6 3.5876 1.1527 1.8417 6 6 3.7639 -0.1485 2.2754 7 6 3.8943 -0.4170 3.6238 8 6 3.8594 0.6231 4.5440 9 7 3.9970 0.3558 5.9080 10 6 3.9545 1.4533 6.8775 11 6 4.1838 -1.0221 6.3692 12 6 5.6560 -1.3411 6.4154 13 1 6.3800 -0.5925 6.1294 14 6 6.0786 -2.5887 6.8227 15 7 7.3633 -2.8672 6.8626 16 14 4.8264 -3.8834 7.3180 17 1 4.4377 -4.6780 6.1253 18 1 5.4214 -4.7823 8.3393 19 1 3.6246 -3.2189 7.8833 20 6 3.6822 1.9290 4.1050 21 6 3.5468 2.1899 2.7555 22 6 1.7890 2.0249 -1.3020 23 1 0.7241 2.0039 -1.5337 24 6 2.2710 3.4761 -1.2496 25 6 2.5501 1.2811 -2.3691 26 8 3.4479 0.5336 -2.0609 27 8 2.2305 1.4490 -3.6619 28 6 3.0062 0.7011 -4.6352 29 1 -0.3634 0.6231 0.8172 30 1 -0.3634 0.3961 -0.9482 31 1 -0.3633 -1.0193 0.1311 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8330 2.4346 0.1533 35 1 3.9945 0.6982 -0.2033 36 1 3.7952 -0.9562 1.5591 37 1 4.0274 -1.4339 3.9622 38 1 2.9255 1.6145 7.1989 39 1 4.5693 1.1994 7.7409 40 1 4.3370 2.3627 6.4138 41 1 3.7567 -1.1327 7.3659 42 1 3.6853 -1.7060 5.6823 43 1 7.6606 -3.7451 7.1488 44 1 3.6499 2.7394 4.8181 45 1 3.4086 3.2049 2.4136 46 1 3.3359 3.4971 -1.0179 47 1 2.1003 3.9508 -2.2158 48 1 1.7205 4.0140 -0.4778 49 1 2.6457 0.9276 -5.6386 50 1 4.0567 0.9802 -4.5546 51 1 2.8981 -0.3664 -4.4431 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231821999.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:48 Heat of formation + Delta-G solvation = -33.437303 kcal Electronic energy + Delta-G solvation = -29496.570161 eV Core-core repulsion = 25589.925482 eV Total energy + Delta-G solvation = -3906.644679 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.16568 -39.18608 -38.04649 -36.34844 -35.53385 -32.68860 -32.49048 -31.19799 -30.49428 -28.77458 -28.24521 -27.99119 -26.06245 -24.57030 -23.57824 -22.69004 -21.80535 -21.33441 -20.19898 -19.55958 -17.92959 -16.99886 -16.92270 -16.66840 -16.48710 -15.81874 -15.45699 -15.19894 -14.61478 -14.33090 -14.24289 -14.12071 -13.60955 -13.43359 -13.31087 -13.19127 -12.95630 -12.81878 -12.58974 -12.46811 -12.32339 -12.17358 -12.04233 -11.85692 -11.62784 -11.59715 -11.42989 -11.20978 -11.06741 -11.00602 -10.80745 -10.67165 -10.60747 -10.58244 -10.22760 -10.00655 -9.56808 -8.87848 -8.64653 -8.39081 -8.24423 -6.37135 -6.13327 -4.13185 1.92566 2.10745 2.21621 2.47189 3.22524 3.30256 3.31042 3.71523 4.08514 4.33323 4.49759 4.52775 4.71923 4.78190 4.80951 4.88694 4.94675 5.16759 5.17162 5.20990 5.30944 5.38590 5.43109 5.47318 5.53990 5.61586 5.63809 5.75712 5.75945 5.83777 5.94552 5.99723 6.00568 6.05601 6.13079 6.23656 6.29760 6.36409 6.42549 6.59469 6.75478 6.77823 6.83964 6.91951 7.08329 7.10694 7.32629 7.52008 7.54560 7.58216 8.07489 8.37482 8.53274 8.94516 9.46648 10.99753 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016321 B = 0.002654 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.150967 B =10545.945290 C =11163.477077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.034 3.966 3 N -0.496 5.496 4 C 0.084 3.916 5 C -0.159 4.159 6 C -0.066 4.066 7 C -0.187 4.187 8 C 0.240 3.760 9 N -0.612 5.612 10 C 0.099 3.901 11 C 0.221 3.779 12 C -0.533 4.533 13 H 0.076 0.924 14 C 0.072 3.928 15 N -0.895 5.895 16 Si 0.872 3.128 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.265 1.265 20 C -0.218 4.218 21 C -0.053 4.053 22 C 0.089 3.911 23 H 0.117 0.883 24 C -0.144 4.144 25 C 0.430 3.570 26 O -0.500 6.500 27 O -0.364 6.364 28 C 0.033 3.967 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.127 0.873 38 H 0.036 0.964 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.027 0.973 42 H 0.027 0.973 43 H 0.265 0.735 44 H 0.114 0.886 45 H 0.109 0.891 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.085 0.915 49 H 0.099 0.901 50 H 0.062 0.938 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.934 11.324 -18.808 26.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.094 4.094 3 N -0.220 5.220 4 C -0.041 4.041 5 C -0.162 4.162 6 C -0.085 4.085 7 C -0.210 4.210 8 C 0.134 3.866 9 N -0.318 5.318 10 C -0.045 4.045 11 C 0.100 3.900 12 C -0.572 4.572 13 H 0.094 0.906 14 C -0.131 4.131 15 N -0.533 5.533 16 Si 0.699 3.301 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.190 1.190 20 C -0.241 4.241 21 C -0.073 4.073 22 C -0.022 4.022 23 H 0.135 0.865 24 C -0.202 4.202 25 C 0.271 3.729 26 O -0.387 6.387 27 O -0.279 6.279 28 C -0.061 4.061 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.126 0.874 37 H 0.144 0.856 38 H 0.054 0.946 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.075 0.925 44 H 0.132 0.868 45 H 0.127 0.873 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.104 0.896 49 H 0.117 0.883 50 H 0.080 0.920 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.756 11.139 -18.094 25.311 hybrid contribution 0.256 -1.520 -0.371 1.585 sum -13.500 9.619 -18.465 24.814 Atomic orbital electron populations 1.21799 0.95021 1.01870 1.01828 1.22351 0.95736 0.88753 1.02517 1.62716 1.19517 1.18128 1.21603 1.21331 0.87091 1.02461 0.93257 1.19157 1.09777 0.93419 0.93804 1.20673 0.97565 0.95511 0.94771 1.20777 1.08778 0.99130 0.92281 1.17900 0.91327 0.93051 0.84306 1.46694 1.75426 1.07691 1.02014 1.21483 0.99779 0.90088 0.93117 1.19646 0.97385 0.78446 0.94569 1.21486 0.90858 0.99588 1.45268 0.90576 1.24906 0.95098 0.98081 0.94990 1.69909 1.13821 1.22155 1.47466 0.86910 0.81994 0.82159 0.79034 1.19920 1.20976 1.19005 1.20552 1.12858 0.94781 0.95915 1.20492 0.97073 0.97680 0.92038 1.21882 1.00586 0.95170 0.84600 0.86498 1.21888 1.02616 0.92243 1.03427 1.25848 0.82806 0.80684 0.83552 1.90649 1.29934 1.36113 1.81998 1.86564 1.59142 1.64740 1.17480 1.23235 0.96043 0.96236 0.90577 0.91384 0.93459 0.92292 0.94198 0.89081 0.90573 0.90901 0.87362 0.85561 0.94587 0.91342 0.92395 0.95488 0.95531 0.92530 0.86839 0.87305 0.91457 0.91162 0.89629 0.88286 0.91952 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.80 37.16 0.36 -1.09 16 2 C 0.03 0.41 5.25 -3.83 -0.02 0.39 16 3 N -0.50 -5.81 4.42 -229.48 -1.01 -6.83 16 4 C 0.08 1.14 4.21 -4.98 -0.02 1.12 16 5 C -0.16 -2.51 5.10 -104.59 -0.53 -3.04 16 6 C -0.07 -1.16 8.10 -39.61 -0.32 -1.48 16 7 C -0.19 -3.78 9.21 -39.38 -0.36 -4.14 16 8 C 0.24 4.84 6.55 -83.79 -0.55 4.29 16 9 N -0.61 -12.92 2.99 -180.99 -0.54 -13.46 16 10 C 0.10 1.72 10.19 59.84 0.61 2.33 16 11 C 0.22 5.24 3.99 -5.19 -0.02 5.22 16 12 C -0.53 -14.94 9.94 -34.44 -0.34 -15.29 16 13 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 14 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 15 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 16 Si 0.87 20.90 27.47 -169.99 -4.67 16.23 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 20 C -0.22 -3.78 9.21 -39.38 -0.36 -4.14 16 21 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 22 C 0.09 0.84 2.78 -68.86 -0.19 0.65 16 23 H 0.12 0.93 6.78 -51.93 -0.35 0.58 16 24 C -0.14 -1.11 8.94 37.16 0.33 -0.77 16 25 C 0.43 4.76 6.20 36.01 0.22 4.98 16 26 O -0.50 -6.94 11.99 -18.75 -0.22 -7.16 16 27 O -0.36 -3.52 10.57 -39.25 -0.41 -3.94 16 28 C 0.03 0.25 10.56 101.05 1.07 1.31 16 29 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.05 0.40 7.03 -51.93 -0.37 0.04 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.51 5.99 -51.93 -0.31 0.20 16 33 H 0.09 1.25 5.39 -51.93 -0.28 0.97 16 34 H 0.08 0.94 5.46 -51.93 -0.28 0.65 16 35 H 0.07 1.12 5.59 -51.93 -0.29 0.83 16 36 H 0.11 1.77 7.55 -52.49 -0.40 1.37 16 37 H 0.13 2.75 6.14 -52.49 -0.32 2.42 16 38 H 0.04 0.55 8.14 -51.92 -0.42 0.12 16 39 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 40 H 0.06 0.90 6.20 -51.92 -0.32 0.58 16 41 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 42 H 0.03 0.63 5.62 -51.93 -0.29 0.34 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.11 1.77 6.14 -52.49 -0.32 1.44 16 45 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 46 H 0.07 0.57 6.05 -51.93 -0.31 0.26 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 51 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 LS Contribution 396.00 15.07 5.97 5.97 Total: -1.00 -32.18 396.00 -8.77 -40.95 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -8.03 Total: 3.64 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -0.61 Total: -8.93 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.78 Total: -46.75 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -0.64 Total: -11.10 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.67 Total: 16.23 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.18 -8.77 -40.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231821999.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.509 kcal (2) G-P(sol) polarization free energy of solvation -32.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds